HEADER RNA 29-JUL-20 6ZX5 TITLE RACEMIC COMPOUND OF RNA DUPLEXES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'); COMPND 3 CHAIN: K; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHAIN K IS D-ENATIOMER. IT PAIRS WITH CHAIN L.; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3'); COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: CHAIN L IS D-ENANTIOMER. IT PAIRS WITH CHAIN K.; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- COMPND 13 3'); COMPND 14 CHAIN: M; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: CHAIN M IS L-ENANTIOMER. IT PAIRS WITH CHAIN N.; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- COMPND 19 3'); COMPND 20 CHAIN: N; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: CHAIN N IS L-ENANTIOMER. IT PAIRS WITH CHAIN M. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 274; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 8 ORGANISM_TAXID: 274; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 274; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 16 ORGANISM_TAXID: 274 KEYWDS RACEMIC COMPOUND, RNA EXPDTA X-RAY DIFFRACTION AUTHOR W.RYPNIEWSKI REVDAT 4 31-JAN-24 6ZX5 1 REMARK REVDAT 3 26-JUL-23 6ZX5 1 SEQRES REVDAT 2 15-DEC-21 6ZX5 1 JRNL REVDAT 1 26-MAY-21 6ZX5 0 JRNL AUTH A.KILISZEK,L.BLASZCZYK,M.BEJGER,W.RYPNIEWSKI JRNL TITL BROKEN SYMMETRY BETWEEN RNA ENANTIOMERS IN A CRYSTAL JRNL TITL 2 LATTICE. JRNL REF NUCLEIC ACIDS RES. V. 49 12535 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34107036 JRNL DOI 10.1093/NAR/GKAB480 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 10562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.245 REMARK 3 FREE R VALUE TEST SET COUNT : 554 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.4440 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.5190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 676 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30700 REMARK 3 B22 (A**2) : 1.39200 REMARK 3 B33 (A**2) : -0.84000 REMARK 3 B12 (A**2) : 0.95300 REMARK 3 B13 (A**2) : -0.28500 REMARK 3 B23 (A**2) : -0.12000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 752 ; 0.007 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 292 ; 0.003 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1168 ; 1.599 ; 1.452 REMARK 3 BOND ANGLES OTHERS (DEGREES): 726 ; 2.357 ; 2.383 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 128 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 412 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 124 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 115 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 44 ; 0.226 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 264 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.259 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.158 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 752 ; 1.361 ; 2.084 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 750 ; 1.361 ; 2.085 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1168 ; 1.894 ; 3.128 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1169 ; 1.894 ; 3.128 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6ZX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.283 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.523 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16400 REMARK 200 FOR THE DATA SET : 4.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.52600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZQ9 REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE, 0.1 M CACODYLATE REMARK 280 BUFFER, 18% POLYETHYLENE GLYCOL 8000., PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH K 201 O HOH K 219 1.96 REMARK 500 C5 0C N 93 O HOH N 218 2.05 REMARK 500 O HOH L 217 O HOH L 233 2.06 REMARK 500 O HOH M 209 O HOH M 237 2.06 REMARK 500 O HOH L 227 O HOH L 244 2.15 REMARK 500 O HOH N 218 O HOH N 246 2.18 REMARK 500 C5 C L 93 O HOH L 227 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C K 79 C5' - C4' - O4' ANGL. DEV. = 6.2 DEGREES REMARK 500 G K 81 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G K 82 N7 REMARK 620 2 HOH K 203 O 81.1 REMARK 620 3 HOH K 204 O 93.5 84.5 REMARK 620 4 HOH K 215 O 98.0 94.9 168.2 REMARK 620 5 HOH K 222 O 100.9 169.8 85.3 94.8 REMARK 620 6 HOH K 238 O 165.7 84.7 86.5 81.8 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH K 202 O REMARK 620 2 HOH K 207 O 88.1 REMARK 620 3 HOH K 219 O 108.0 92.5 REMARK 620 4 HOH K 244 O 88.0 175.9 90.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 217 O REMARK 620 2 HOH L 221 O 101.4 REMARK 620 3 HOH L 226 O 94.9 90.3 REMARK 620 4 HOH L 233 O 60.2 85.3 153.0 REMARK 620 5 HOH L 245 O 83.2 175.4 88.9 97.4 REMARK 620 6 HOH N 241 O 166.3 84.4 97.6 108.5 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 216 O REMARK 620 2 HOH L 225 O 85.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN N 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 236 O REMARK 620 2 HOH L 238 O 69.0 REMARK 620 3 HOH N 211 O 76.5 80.2 REMARK 620 4 HOH N 224 O 160.6 109.8 84.2 REMARK 620 5 HOH N 228 O 97.3 166.3 97.4 83.2 REMARK 620 6 HOH N 250 O 85.1 89.2 161.0 114.3 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G M 82 N7 REMARK 620 2 HOH M 218 O 95.4 REMARK 620 3 HOH M 221 O 86.3 95.6 REMARK 620 4 HOH M 228 O 90.2 172.9 88.9 REMARK 620 5 HOH M 229 O 102.5 81.0 170.7 93.7 REMARK 620 6 HOH M 244 O 164.9 82.0 79.1 93.6 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G M 85 N7 REMARK 620 2 HOH M 203 O 79.0 REMARK 620 3 HOH M 204 O 86.1 72.5 REMARK 620 4 HOH M 216 O 88.2 160.4 92.1 REMARK 620 5 HOH M 224 O 86.4 73.3 145.8 120.9 REMARK 620 6 HOH M 245 O 171.0 95.3 85.5 95.4 98.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZPF RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZQ9 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZR1 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZRL RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZRS RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZW3 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZWU RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 6ZX8 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9L RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9N RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9O RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9P RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9Q RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9R RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9S RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM REMARK 900 RELATED ID: 7A9T RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF THIS FORM DBREF 6ZX5 K 79 86 PDB 6ZX5 6ZX5 79 86 DBREF 6ZX5 L 90 97 PDB 6ZX5 6ZX5 90 97 DBREF 6ZX5 M 79 86 PDB 6ZX5 6ZX5 79 86 DBREF 6ZX5 N 90 97 PDB 6ZX5 6ZX5 90 97 SEQRES 1 K 8 C U G G G C G G SEQRES 1 L 8 C C G C C U G G SEQRES 1 M 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 N 8 0C 0C 0G 0C 0C 0U 0G 0G HET 0C M 79 17 HET 0U M 80 20 HET 0G M 81 23 HET 0G M 82 23 HET 0G M 83 23 HET 0C M 84 20 HET 0G M 85 23 HET 0G M 86 23 HET 0C N 90 17 HET 0C N 91 20 HET 0G N 92 23 HET 0C N 93 20 HET 0C N 94 20 HET 0U N 95 20 HET 0G N 96 23 HET 0G N 97 23 HET ZN K 101 1 HET ZN K 102 1 HET ZN L 101 1 HET ZN L 102 1 HET ZN M 101 1 HET ZN M 102 1 HET ZN N 101 1 HETNAM 0C L-CYTIDINE-5'-MONOPHOSPHATE HETNAM 0U L-URIDINE-5'-MONOPHOSPHATE HETNAM 0G L-GUANOSINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 0C 6(C9 H14 N3 O8 P) FORMUL 3 0U 2(C9 H13 N2 O9 P) FORMUL 3 0G 8(C10 H14 N5 O8 P) FORMUL 5 ZN 7(ZN 2+) FORMUL 12 HOH *186(H2 O) LINK O3' 0C M 79 P 0U M 80 1555 1555 1.61 LINK O3' 0U M 80 P 0G M 81 1555 1555 1.61 LINK O3' 0G M 81 P 0G M 82 1555 1555 1.58 LINK O3' 0G M 82 P 0G M 83 1555 1555 1.59 LINK O3' 0G M 83 P 0C M 84 1555 1555 1.58 LINK O3' 0C M 84 P 0G M 85 1555 1555 1.60 LINK O3' 0G M 85 P 0G M 86 1555 1555 1.56 LINK O3' 0C N 90 P 0C N 91 1555 1555 1.63 LINK O3' 0C N 91 P 0G N 92 1555 1555 1.58 LINK O3' 0G N 92 P 0C N 93 1555 1555 1.61 LINK O3' 0C N 93 P 0C N 94 1555 1555 1.59 LINK O3' 0C N 94 P 0U N 95 1555 1555 1.58 LINK O3' 0U N 95 P 0G N 96 1555 1555 1.61 LINK O3' 0G N 96 P 0G N 97 1555 1555 1.59 LINK N7 G K 82 ZN ZN K 101 1555 1555 2.09 LINK ZN ZN K 101 O HOH K 203 1555 1555 2.18 LINK ZN ZN K 101 O HOH K 204 1555 1555 2.34 LINK ZN ZN K 101 O HOH K 215 1555 1555 2.17 LINK ZN ZN K 101 O HOH K 222 1555 1555 1.99 LINK ZN ZN K 101 O HOH K 238 1555 1555 2.13 LINK ZN ZN K 102 O HOH K 202 1555 1555 2.16 LINK ZN ZN K 102 O HOH K 207 1555 1555 2.29 LINK ZN ZN K 102 O HOH K 219 1555 1555 1.71 LINK ZN ZN K 102 O HOH K 244 1555 1555 2.22 LINK ZN ZN L 101 O HOH L 217 1555 1555 2.14 LINK ZN ZN L 101 O HOH L 221 1555 1555 2.12 LINK ZN ZN L 101 O HOH L 226 1555 1555 2.00 LINK ZN ZN L 101 O HOH L 233 1555 1555 1.95 LINK ZN ZN L 101 O HOH L 245 1555 1555 2.20 LINK ZN ZN L 101 O HOH N 241 1555 1456 2.17 LINK ZN ZN L 102 O HOH L 216 1555 1555 2.11 LINK ZN ZN L 102 O HOH L 225 1555 1555 2.27 LINK O HOH L 236 ZN ZN N 101 1555 1555 2.10 LINK O HOH L 238 ZN ZN N 101 1555 1555 2.36 LINK N7 0G M 82 ZN ZN M 101 1555 1555 2.08 LINK N7 0G M 85 ZN ZN M 102 1555 1555 2.68 LINK ZN ZN M 101 O HOH M 218 1555 1555 2.13 LINK ZN ZN M 101 O HOH M 221 1555 1555 2.34 LINK ZN ZN M 101 O HOH M 228 1555 1555 2.00 LINK ZN ZN M 101 O HOH M 229 1555 1555 2.03 LINK ZN ZN M 101 O HOH M 244 1555 1555 2.10 LINK ZN ZN M 102 O HOH M 203 1555 1555 2.53 LINK ZN ZN M 102 O HOH M 204 1555 1555 2.20 LINK ZN ZN M 102 O HOH M 216 1555 1555 2.07 LINK ZN ZN M 102 O HOH M 224 1555 1555 2.11 LINK ZN ZN M 102 O HOH M 245 1555 1555 1.81 LINK ZN ZN N 101 O HOH N 211 1555 1555 2.13 LINK ZN ZN N 101 O HOH N 224 1555 1555 2.45 LINK ZN ZN N 101 O HOH N 228 1555 1555 2.17 LINK ZN ZN N 101 O HOH N 250 1555 1555 2.11 CRYST1 21.000 26.220 38.640 105.66 96.65 91.86 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.047619 0.001544 0.006214 0.00000 SCALE2 0.000000 0.038159 0.010945 0.00000 SCALE3 0.000000 0.000000 0.027106 0.00000