HEADER REPLICATION 30-JUL-20 6ZXP TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE VACCINIA VIRUS DNA TITLE 2 POLYMERASE PROCESSIVITY FACTOR COMPONENT A20 FUSED TO A SHORT PEPTIDE TITLE 3 FROM THE VIRAL DNA POLYMERASE E9. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20,DNA COMPND 3 POLYMERASE PROCESSIVITY FACTOR COMPONENT E9; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THIS IS A RECOMBINANT FUSION PROTEIN: RESIDUES 2-124 COMPND 8 CORRESPOND TO A20_VACCC:304-426, RESIDUES 125-135 TO A FLEXIBLE COMPND 9 LINKER AND RESIDUES 136-150 TO E9_VACCC:576-590. E9_VACCC:L587A COMPND 10 MUTATION,THIS IS A RECOMBINANT FUSION PROTEIN: RESIDUES 2-124 COMPND 11 CORRESPOND TO A20_VACCC:304-426, RESIDUES 125-135 TO A FLEXIBLE COMPND 12 LINKER AND RESIDUES 136-150 TO E9_VACCC:576-590. E9_VACCC:L587A COMPND 13 MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS COPENHAGEN; SOURCE 3 ORGANISM_TAXID: 10249; SOURCE 4 GENE: A20R; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: -STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS POXVIRIDAE, DNA POLYMERASE HOLOENZYME, PROCESSIVITY FACTOR BINDING, KEYWDS 2 REPLICATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.BERSCH,N.TARBOURIECH,W.BURMEISTER,F.ISENI REVDAT 4 19-JUN-24 6ZXP 1 REMARK REVDAT 3 14-JUN-23 6ZXP 1 REMARK REVDAT 2 26-MAY-21 6ZXP 1 JRNL REVDAT 1 19-MAY-21 6ZXP 0 JRNL AUTH B.BERSCH,N.TARBOURIECH,W.P.BURMEISTER,F.ISENI JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF A20, THE JRNL TITL 2 MISSING BRICK FOR THE CHARACTERIZATION OF THE INTERFACE JRNL TITL 3 BETWEEN VACCINIA VIRUS DNA POLYMERASE AND ITS PROCESSIVITY JRNL TITL 4 FACTOR. JRNL REF J.MOL.BIOL. V. 433 67009 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33901538 JRNL DOI 10.1016/J.JMB.2021.167009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.TARBOURIECH,C.DUCOURNAU,S.HUTIN,P.J.MAS,P.MAN,E.FOREST, REMARK 1 AUTH 2 D.J.HART,C.N.PEYREFITTE,W.BURMEISTER,F.ISENI REMARK 1 TITL THE VACCINIA VIRUS DNA POLYMERASE STRUCTURE PROVIDES REMARK 1 TITL 2 INSIGHTS INTO THE MODE OF PROCESSIVITY FACTOR BINDING. REMARK 1 REF NATURE COMMUNICATIONS V. 8 1455 2017 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 29129932 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN EXPLICIT WATER REMARK 4 REMARK 4 6ZXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110366. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] A20-I3, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 300 MM NACL, REMARK 210 1.2 MM TCEP, 90% H2O/10% D2O; REMARK 210 0.8 MM [U-15N13C] A20-I3, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 300 MM NACL, REMARK 210 1.2 MM TCEP, 90% H2O/10% D2O; 1 REMARK 210 MM [U-15N13C] A20-I3, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 300 MM NACL, REMARK 210 1.2 MM TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-TROSY; 13C-HSQC; 2D-TOCSY; REMARK 210 3D HNCO; 3D HNCACB; 3D HN(COCA) REMARK 210 CB; 3D HCCH-TOCSY; 3D-15N-EDITED REMARK 210 NOESY; 3D-13C EDITED NOESY; 3D- REMARK 210 13C-13C METHYL NOESY; 2D NOESY; REMARK 210 15N-R1; 15N-R2; 15N HETNOE REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR ANALYSIS, UNIO, REMARK 210 ARIA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 70.93 59.41 REMARK 500 1 VAL A 9 157.43 66.37 REMARK 500 1 ASN A 125 140.50 178.22 REMARK 500 1 SER A 135 -85.59 -52.70 REMARK 500 1 ARG A 137 -57.69 67.04 REMARK 500 2 LYS A 4 43.34 -97.30 REMARK 500 2 PHE A 6 143.89 68.67 REMARK 500 2 VAL A 9 158.12 177.13 REMARK 500 2 THR A 90 25.81 -77.16 REMARK 500 2 GLU A 124 104.37 -50.99 REMARK 500 2 ASN A 136 -49.27 68.89 REMARK 500 2 ARG A 137 -39.79 -143.77 REMARK 500 3 TYR A 5 -166.09 -101.09 REMARK 500 3 VAL A 9 143.87 -37.81 REMARK 500 3 GLU A 124 104.83 -53.27 REMARK 500 3 ASN A 129 59.75 -159.10 REMARK 500 3 SER A 135 -72.48 -56.04 REMARK 500 3 ASN A 136 -124.34 -177.58 REMARK 500 4 GLU A 124 104.16 -47.60 REMARK 500 4 SER A 127 44.18 -107.86 REMARK 500 4 ARG A 137 -67.93 74.53 REMARK 500 4 GLN A 149 57.16 -91.73 REMARK 500 5 LYS A 4 -73.84 -132.03 REMARK 500 5 TYR A 5 -170.88 59.26 REMARK 500 5 PHE A 6 -170.38 61.81 REMARK 500 5 SER A 7 107.17 74.61 REMARK 500 5 GLU A 124 96.08 -52.13 REMARK 500 5 ASN A 136 -167.90 -168.33 REMARK 500 5 LEU A 148 96.86 -57.69 REMARK 500 5 LYS A 150 126.70 61.44 REMARK 500 6 SER A 7 87.09 49.06 REMARK 500 6 VAL A 9 150.69 69.06 REMARK 500 6 GLU A 124 71.19 45.09 REMARK 500 6 ASN A 129 -73.89 -131.93 REMARK 500 6 ASN A 136 -170.89 -178.20 REMARK 500 7 LYS A 4 69.61 61.80 REMARK 500 7 PHE A 6 99.08 57.35 REMARK 500 7 VAL A 9 176.25 60.83 REMARK 500 7 SER A 11 -8.05 75.02 REMARK 500 7 THR A 90 20.77 -78.94 REMARK 500 7 GLU A 124 102.95 -53.83 REMARK 500 7 SER A 131 136.92 72.96 REMARK 500 7 SER A 135 -78.91 -63.62 REMARK 500 7 ASN A 136 -152.01 -134.89 REMARK 500 7 LEU A 148 107.93 -59.03 REMARK 500 7 LYS A 150 127.53 72.17 REMARK 500 8 SER A 11 40.37 -98.05 REMARK 500 8 GLU A 124 103.62 -51.14 REMARK 500 8 ASN A 125 63.44 67.67 REMARK 500 8 ASN A 136 -161.04 165.65 REMARK 500 REMARK 500 THIS ENTRY HAS 131 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34544 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE VACCINIA VIRUS REMARK 900 DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20 FUSED TO A SHORT REMARK 900 PEPTIDE FROM THE VIRAL DNA POLYMERASE E9. DBREF 6ZXP A 2 124 UNP P20995 A20_VACCC 304 426 DBREF 6ZXP A 136 151 PDB 6ZXP 6ZXP 136 151 SEQADV 6ZXP GLY A 1 UNP P20995 EXPRESSION TAG SEQADV 6ZXP ASN A 125 UNP P20995 LINKER SEQADV 6ZXP ALA A 126 UNP P20995 LINKER SEQADV 6ZXP SER A 127 UNP P20995 LINKER SEQADV 6ZXP GLY A 128 UNP P20995 LINKER SEQADV 6ZXP ASN A 129 UNP P20995 LINKER SEQADV 6ZXP GLY A 130 UNP P20995 LINKER SEQADV 6ZXP SER A 131 UNP P20995 LINKER SEQADV 6ZXP GLY A 132 UNP P20995 LINKER SEQADV 6ZXP GLY A 133 UNP P20995 LINKER SEQADV 6ZXP GLY A 134 UNP P20995 LINKER SEQADV 6ZXP SER A 135 UNP P20995 LINKER SEQRES 1 A 151 GLY ASN GLY LYS TYR PHE SER LYS VAL GLY SER ALA GLY SEQRES 2 A 151 LEU LYS GLN LEU THR ASN LYS LEU ASP ILE ASN GLU CYS SEQRES 3 A 151 ALA THR VAL ASP GLU LEU VAL ASP GLU ILE ASN LYS SER SEQRES 4 A 151 GLY THR VAL LYS ARG LYS ILE LYS ASN GLN SER ALA PHE SEQRES 5 A 151 ASP LEU SER ARG GLU CYS LEU GLY TYR PRO GLU ALA ASP SEQRES 6 A 151 PHE ILE THR LEU VAL ASN ASN MET ARG PHE LYS ILE GLU SEQRES 7 A 151 ASN CYS LYS VAL VAL ASN PHE ASN ILE GLU ASN THR ASN SEQRES 8 A 151 CYS LEU ASN ASN PRO SER ILE GLU THR ILE TYR ARG ASN SEQRES 9 A 151 PHE ASN GLN PHE VAL SER ILE PHE ASN VAL VAL THR ASP SEQRES 10 A 151 VAL LYS LYS ARG LEU PHE GLU ASN ALA SER GLY ASN GLY SEQRES 11 A 151 SER GLY GLY GLY SER ASN ARG LEU GLU GLU GLU ILE ASN SEQRES 12 A 151 ASN GLN LEU ALA LEU GLN LYS SER HELIX 1 AA1 GLY A 10 ASP A 22 1 13 HELIX 2 AA2 THR A 28 SER A 39 1 12 HELIX 3 AA3 SER A 39 GLN A 49 1 11 HELIX 4 AA4 SER A 50 GLY A 60 1 11 HELIX 5 AA5 PRO A 62 ASN A 72 1 11 HELIX 6 AA6 ASN A 91 ASN A 94 5 4 HELIX 7 AA7 ASN A 95 ASN A 104 1 10 HELIX 8 AA8 ASN A 104 PHE A 123 1 20 HELIX 9 AA9 ARG A 137 LEU A 148 1 12 SHEET 1 AA1 2 MET A 73 GLU A 78 0 SHEET 2 AA1 2 LYS A 81 ILE A 87 -1 O ASN A 86 N ARG A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1