HEADER REPLICATION 31-JUL-20 6ZYC TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE VACCINIA VIRUS DNA TITLE 2 POLYMERASE PROCESSIVITY FACTOR COMPONENT A20. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUES 2-124 OF THE CONSTRUCT CORRESPOND TO A20:304- COMPND 6 426, RESIDUES 125-134 TO A FLEXIBLE LINKER AND RESIDUES 136-148 TO A COMPND 7 BIOTIN AFFINITY PEPTIDE (BAP),RESIDUES 2-124 OF THE CONSTRUCT COMPND 8 CORRESPOND TO A20:304-426, RESIDUES 125-134 TO A FLEXIBLE LINKER AND COMPND 9 RESIDUES 136-148 TO A BIOTIN AFFINITY PEPTIDE (BAP) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN COPENHAGEN); SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10249; SOURCE 5 STRAIN: COPENHAGEN; SOURCE 6 GENE: A20R; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: -STAR KEYWDS POXVIRIDAE, DNA POLYMERASE HOLOENZYME, PROCESSIVITY FACTOR BINDING, KEYWDS 2 REPLICATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.BERSCH,F.ISENI,W.BURMEISTER,N.TARBOURIECH REVDAT 4 19-JUN-24 6ZYC 1 REMARK REVDAT 3 14-JUN-23 6ZYC 1 REMARK REVDAT 2 26-MAY-21 6ZYC 1 JRNL REVDAT 1 19-MAY-21 6ZYC 0 JRNL AUTH B.BERSCH,N.TARBOURIECH,W.P.BURMEISTER,F.ISENI JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF A20, THE JRNL TITL 2 MISSING BRICK FOR THE CHARACTERIZATION OF THE INTERFACE JRNL TITL 3 BETWEEN VACCINIA VIRUS DNA POLYMERASE AND ITS PROCESSIVITY JRNL TITL 4 FACTOR. JRNL REF J.MOL.BIOL. V. 433 67009 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33901538 JRNL DOI 10.1016/J.JMB.2021.167009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.TARBOURIECH,C.DUCOURNAU,S.HUTIN,P.J.MAS,P.MAN,E.FOREST, REMARK 1 AUTH 2 D.J.HART,C.N.PEYREFITTE,W.BURMEISTER,F.ISENI REMARK 1 TITL THE VACCINIA VIRUS DNA POLYMERASE STRUCTURE PROVIDES REMARK 1 TITL 2 INSIGHTS INTO THE MODE OF PROCESSIVITY FACTOR BINDING. REMARK 1 REF NATURE COMMUNICATIONS V. 8 1455 2017 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 29129932 REMARK 1 DOI 10.1038/S41467-017-01542-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 6ZYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110500. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] A20-BAP, 50 MM REMARK 210 SODIUM CITRATE, 300 MM SODIUM REMARK 210 CHLORIDE, 2 MG/L TCEP, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-15N] A20-BAP, REMARK 210 50 MM SODIUM CITRATE, 300 MM REMARK 210 SODIUM CHLORIDE, 2 MG/L TCEP, 90% REMARK 210 H2O/10% D2O; 1 MM [U-15N] A20- REMARK 210 BAP, 50 MM POTASSIUM PHOSPHATE, REMARK 210 300 MM SODIUM CHLORIDE, 1.2 MM REMARK 210 TCEP, 100% D2O; 1 MM [U-15N] A20- REMARK 210 BAP, 50 MM POTASSIUM PHOSPHATE, REMARK 210 300 MM SODIUM CHLORIDE, 1.2 MM REMARK 210 TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 15N-TROSY; 2D 13C-HSQC; 3D REMARK 210 HNCO; 3D HNCACB; 3D HCCH-TOCSY; REMARK 210 15N-NOESY; 13C-NOESY; 2D-NOESY; REMARK 210 13C-13C-METHYL-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR ANALYSIS, UNIO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 -66.30 -107.40 REMARK 500 1 VAL A 9 -86.72 -103.32 REMARK 500 1 SER A 11 -12.99 71.72 REMARK 500 1 GLU A 124 -84.09 -79.29 REMARK 500 1 SER A 131 -172.51 59.97 REMARK 500 1 ASN A 136 26.18 -76.58 REMARK 500 1 PHE A 139 32.28 -96.17 REMARK 500 2 LYS A 4 -67.36 -94.66 REMARK 500 2 VAL A 9 -94.92 -94.04 REMARK 500 2 SER A 11 -15.86 75.55 REMARK 500 2 PHE A 123 -66.44 -104.89 REMARK 500 2 GLU A 124 160.37 61.94 REMARK 500 2 ASN A 125 28.66 48.62 REMARK 500 2 LEU A 135 -98.42 -73.22 REMARK 500 2 ASN A 136 23.57 44.77 REMARK 500 2 ALA A 141 110.84 59.69 REMARK 500 2 TRP A 146 135.49 65.31 REMARK 500 3 TYR A 5 -56.56 -148.17 REMARK 500 3 VAL A 9 -90.65 -92.75 REMARK 500 3 SER A 11 -13.73 71.71 REMARK 500 3 GLU A 124 -79.99 -98.82 REMARK 500 3 ASN A 125 64.30 -115.96 REMARK 500 3 ASN A 136 24.04 -77.14 REMARK 500 4 LYS A 4 -70.50 -100.00 REMARK 500 4 VAL A 9 -95.00 -94.98 REMARK 500 4 SER A 11 -10.05 81.55 REMARK 500 4 SER A 131 45.68 -88.50 REMARK 500 5 VAL A 9 -91.61 -99.78 REMARK 500 5 SER A 11 -5.82 71.53 REMARK 500 5 PHE A 123 -89.01 -98.21 REMARK 500 5 GLU A 124 -85.72 51.73 REMARK 500 5 SER A 131 -170.97 57.63 REMARK 500 5 ASN A 136 32.11 -77.79 REMARK 500 5 PHE A 139 40.24 -88.36 REMARK 500 6 LYS A 4 -70.03 -102.66 REMARK 500 6 VAL A 9 -82.44 -93.74 REMARK 500 6 SER A 11 -13.02 69.86 REMARK 500 6 GLU A 124 -85.26 -79.61 REMARK 500 6 LEU A 135 -114.92 -89.41 REMARK 500 6 ASN A 136 30.81 37.51 REMARK 500 6 PHE A 139 38.54 -92.72 REMARK 500 6 GLU A 140 97.24 58.01 REMARK 500 7 ASN A 2 -167.83 -102.61 REMARK 500 7 VAL A 9 -88.26 -85.51 REMARK 500 7 SER A 11 -10.99 69.48 REMARK 500 7 ASN A 94 0.76 -65.17 REMARK 500 7 PHE A 123 -75.30 -106.50 REMARK 500 7 GLU A 124 -76.89 60.88 REMARK 500 7 LEU A 135 -125.99 -125.42 REMARK 500 7 ASN A 136 28.35 45.16 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZXP RELATED DB: PDB REMARK 900 RELATED ID: 4OD8 RELATED DB: PDB REMARK 900 RELATED ID: 34545 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE VACCINIA VIRUS REMARK 900 DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20. DBREF 6ZYC A 2 124 UNP P20995 A20_VACCC 304 426 SEQADV 6ZYC GLY A 1 UNP P20995 EXPRESSION TAG SEQADV 6ZYC ASN A 125 UNP P20995 LINKER SEQADV 6ZYC ALA A 126 UNP P20995 LINKER SEQADV 6ZYC SER A 127 UNP P20995 LINKER SEQADV 6ZYC GLY A 128 UNP P20995 LINKER SEQADV 6ZYC ASN A 129 UNP P20995 LINKER SEQADV 6ZYC GLY A 130 UNP P20995 LINKER SEQADV 6ZYC SER A 131 UNP P20995 LINKER SEQADV 6ZYC GLY A 132 UNP P20995 LINKER SEQADV 6ZYC GLY A 133 UNP P20995 LINKER SEQADV 6ZYC GLY A 134 UNP P20995 LINKER SEQADV 6ZYC LEU A 135 UNP P20995 EXPRESSION TAG SEQADV 6ZYC ASN A 136 UNP P20995 EXPRESSION TAG SEQADV 6ZYC ASP A 137 UNP P20995 EXPRESSION TAG SEQADV 6ZYC ILE A 138 UNP P20995 EXPRESSION TAG SEQADV 6ZYC PHE A 139 UNP P20995 EXPRESSION TAG SEQADV 6ZYC GLU A 140 UNP P20995 EXPRESSION TAG SEQADV 6ZYC ALA A 141 UNP P20995 EXPRESSION TAG SEQADV 6ZYC GLN A 142 UNP P20995 EXPRESSION TAG SEQADV 6ZYC LYS A 143 UNP P20995 EXPRESSION TAG SEQADV 6ZYC ILE A 144 UNP P20995 EXPRESSION TAG SEQADV 6ZYC GLU A 145 UNP P20995 EXPRESSION TAG SEQADV 6ZYC TRP A 146 UNP P20995 EXPRESSION TAG SEQADV 6ZYC HIS A 147 UNP P20995 EXPRESSION TAG SEQADV 6ZYC GLU A 148 UNP P20995 EXPRESSION TAG SEQRES 1 A 148 GLY ASN GLY LYS TYR PHE SER LYS VAL GLY SER ALA GLY SEQRES 2 A 148 LEU LYS GLN LEU THR ASN LYS LEU ASP ILE ASN GLU CYS SEQRES 3 A 148 ALA THR VAL ASP GLU LEU VAL ASP GLU ILE ASN LYS SER SEQRES 4 A 148 GLY THR VAL LYS ARG LYS ILE LYS ASN GLN SER ALA PHE SEQRES 5 A 148 ASP LEU SER ARG GLU CYS LEU GLY TYR PRO GLU ALA ASP SEQRES 6 A 148 PHE ILE THR LEU VAL ASN ASN MET ARG PHE LYS ILE GLU SEQRES 7 A 148 ASN CYS LYS VAL VAL ASN PHE ASN ILE GLU ASN THR ASN SEQRES 8 A 148 CYS LEU ASN ASN PRO SER ILE GLU THR ILE TYR ARG ASN SEQRES 9 A 148 PHE ASN GLN PHE VAL SER ILE PHE ASN VAL VAL THR ASP SEQRES 10 A 148 VAL LYS LYS ARG LEU PHE GLU ASN ALA SER GLY ASN GLY SEQRES 11 A 148 SER GLY GLY GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS SEQRES 12 A 148 ILE GLU TRP HIS GLU HELIX 1 AA1 SER A 11 ASP A 22 1 12 HELIX 2 AA2 THR A 28 SER A 39 1 12 HELIX 3 AA3 SER A 39 GLN A 49 1 11 HELIX 4 AA4 SER A 50 LEU A 59 1 10 HELIX 5 AA5 PRO A 62 ASN A 72 1 11 HELIX 6 AA6 ASN A 91 ASN A 94 5 4 HELIX 7 AA7 ASN A 95 ASN A 104 1 10 HELIX 8 AA8 ASN A 104 PHE A 123 1 20 HELIX 9 AA9 GLY A 134 ILE A 138 5 5 SHEET 1 AA1 2 MET A 73 GLU A 78 0 SHEET 2 AA1 2 LYS A 81 ILE A 87 -1 O ASN A 86 N ARG A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1