HEADER SIGNALING PROTEIN 31-JUL-20 6ZYF TITLE NOTUM_GHRELIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HNOTUM; COMPND 5 EC: 3.1.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NOTUM, OK/SW-CL.30; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS NOTUM GHRELIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,E.Y.JONES REVDAT 4 31-JAN-24 6ZYF 1 REMARK REVDAT 3 07-APR-21 6ZYF 1 JRNL REVDAT 2 17-MAR-21 6ZYF 1 JRNL REVDAT 1 10-MAR-21 6ZYF 0 JRNL AUTH Y.ZHAO,L.N.SCHUHMACHER,M.ROBERTS,S.KAKUGAWA,G.BINEVA-TODD, JRNL AUTH 2 S.HOWELL,N.O'REILLY,C.PERRET,A.P.SNIJDERS,J.P.VINCENT, JRNL AUTH 3 E.Y.JONES JRNL TITL NOTUM DEACYLATES OCTANOYLATED GHRELIN. JRNL REF MOL METAB V. 49 01201 2021 JRNL REFN ESSN 2212-8778 JRNL PMID 33647468 JRNL DOI 10.1016/J.MOLMET.2021.101201 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 44663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 92.0400 - 5.5200 1.00 2891 159 0.1827 0.1905 REMARK 3 2 5.5200 - 4.3800 1.00 2748 146 0.1656 0.1903 REMARK 3 3 4.3800 - 3.8300 1.00 2710 150 0.1885 0.2460 REMARK 3 4 3.8300 - 3.4800 1.00 2684 147 0.2151 0.2268 REMARK 3 5 3.4800 - 3.2300 1.00 2692 146 0.2335 0.2527 REMARK 3 6 3.2300 - 3.0400 1.00 2682 117 0.2546 0.2753 REMARK 3 7 3.0400 - 2.8800 0.99 2671 132 0.2672 0.3016 REMARK 3 8 2.8800 - 2.7600 0.99 2643 156 0.2679 0.2531 REMARK 3 9 2.7600 - 2.6500 0.99 2606 145 0.2771 0.3060 REMARK 3 10 2.6500 - 2.5600 0.99 2622 122 0.2843 0.3077 REMARK 3 11 2.5600 - 2.4800 0.99 2626 140 0.3011 0.3456 REMARK 3 12 2.4800 - 2.4100 0.98 2594 133 0.3088 0.3003 REMARK 3 13 2.4100 - 2.3500 0.98 2599 146 0.3373 0.3594 REMARK 3 14 2.3500 - 2.2900 0.98 2577 117 0.3587 0.3587 REMARK 3 15 2.2900 - 2.2400 0.97 2564 157 0.3632 0.4001 REMARK 3 16 2.2400 - 2.1900 0.95 2497 144 0.3828 0.3705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.5398 29.4557 -19.9132 REMARK 3 T TENSOR REMARK 3 T11: 0.4847 T22: 0.2339 REMARK 3 T33: -0.1849 T12: -0.6144 REMARK 3 T13: -0.1244 T23: -0.8531 REMARK 3 L TENSOR REMARK 3 L11: 0.0567 L22: 0.0826 REMARK 3 L33: 0.0373 L12: -0.0155 REMARK 3 L13: 0.0183 L23: 0.0398 REMARK 3 S TENSOR REMARK 3 S11: -0.1751 S12: -0.2209 S13: 0.5212 REMARK 3 S21: 0.1289 S22: -0.0643 S23: -0.3105 REMARK 3 S31: -0.0846 S32: 0.0277 S33: -0.1377 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.4575 21.0980 -22.9363 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.3707 REMARK 3 T33: 0.0909 T12: -0.6057 REMARK 3 T13: -0.2624 T23: -0.3100 REMARK 3 L TENSOR REMARK 3 L11: 0.3584 L22: 0.3544 REMARK 3 L33: 0.2151 L12: -0.1119 REMARK 3 L13: 0.2686 L23: 0.3057 REMARK 3 S TENSOR REMARK 3 S11: 0.5241 S12: -0.1645 S13: 0.5835 REMARK 3 S21: -0.1135 S22: -0.0759 S23: -0.4647 REMARK 3 S31: -0.2936 S32: -0.4007 S33: 0.3539 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.4824 12.5313 -34.2413 REMARK 3 T TENSOR REMARK 3 T11: 0.3638 T22: 0.3459 REMARK 3 T33: 0.2319 T12: -0.1924 REMARK 3 T13: 0.0127 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.3571 L22: 1.2422 REMARK 3 L33: 0.6150 L12: 0.5204 REMARK 3 L13: 0.2182 L23: -0.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.0379 S13: 0.0436 REMARK 3 S21: -0.1238 S22: -0.0049 S23: 0.0205 REMARK 3 S31: 0.1374 S32: -0.0960 S33: 0.0267 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2070 31.2850 -12.8616 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: 0.4315 REMARK 3 T33: 0.1584 T12: -0.2291 REMARK 3 T13: 0.0447 T23: -0.1104 REMARK 3 L TENSOR REMARK 3 L11: 0.4812 L22: 0.5160 REMARK 3 L33: 0.0320 L12: 0.4557 REMARK 3 L13: 0.2222 L23: 0.2505 REMARK 3 S TENSOR REMARK 3 S11: -0.4491 S12: 0.4788 S13: -0.0806 REMARK 3 S21: -0.2465 S22: 0.4860 S23: 0.1038 REMARK 3 S31: 0.2061 S32: -0.4403 S33: -0.0020 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3678 28.6198 -3.6876 REMARK 3 T TENSOR REMARK 3 T11: 0.3463 T22: 0.3911 REMARK 3 T33: 0.2909 T12: -0.1780 REMARK 3 T13: 0.0521 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 0.1974 L22: 0.1135 REMARK 3 L33: 0.0857 L12: 0.0295 REMARK 3 L13: 0.1440 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.1265 S12: 0.1349 S13: -0.0472 REMARK 3 S21: -0.1214 S22: 0.1930 S23: 0.0485 REMARK 3 S31: 0.2979 S32: -0.2095 S33: 0.0057 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9203 40.4688 -11.3976 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.3719 REMARK 3 T33: 0.3568 T12: -0.1722 REMARK 3 T13: 0.0316 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 0.4116 L22: 0.2320 REMARK 3 L33: 0.1165 L12: -0.0611 REMARK 3 L13: 0.1534 L23: -0.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.4539 S12: 0.4570 S13: 0.4345 REMARK 3 S21: -0.2121 S22: 0.3798 S23: 0.0891 REMARK 3 S31: -0.0163 S32: -0.0444 S33: -0.0537 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9213 32.3196 -3.1246 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.1962 REMARK 3 T33: 0.3657 T12: -0.0089 REMARK 3 T13: 0.0264 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 0.4896 L22: 0.1511 REMARK 3 L33: -0.1161 L12: 0.3839 REMARK 3 L13: 0.0354 L23: 0.0294 REMARK 3 S TENSOR REMARK 3 S11: -0.1781 S12: 0.1479 S13: 0.0778 REMARK 3 S21: 0.0627 S22: 0.2205 S23: -0.3567 REMARK 3 S31: 0.0659 S32: 0.0955 S33: -0.0147 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7955 25.5621 -0.5157 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.2704 REMARK 3 T33: 0.5812 T12: 0.0164 REMARK 3 T13: 0.0560 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.4978 L22: 0.3284 REMARK 3 L33: 0.3193 L12: 0.3432 REMARK 3 L13: 0.1066 L23: -0.1168 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.0118 S13: -0.3953 REMARK 3 S21: 0.0681 S22: 0.1498 S23: -0.5834 REMARK 3 S31: 0.0114 S32: 0.1548 S33: 0.0040 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6022 21.8094 13.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.5353 T22: 0.4092 REMARK 3 T33: 0.5452 T12: -0.0557 REMARK 3 T13: -0.1022 T23: 0.2197 REMARK 3 L TENSOR REMARK 3 L11: 0.2226 L22: 0.0304 REMARK 3 L33: 0.1517 L12: 0.1158 REMARK 3 L13: 0.1245 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -1.2924 S13: -0.5673 REMARK 3 S21: 0.6392 S22: -0.1159 S23: 0.0703 REMARK 3 S31: 0.2987 S32: -0.0046 S33: -0.0240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 86 THROUGH 194 OR REMARK 3 RESID 199 THROUGH 418 OR RESID 432 REMARK 3 THROUGH 451 OR RESID 501)) REMARK 3 SELECTION : (CHAIN B AND (RESID 86 THROUGH 143 OR REMARK 3 (RESID 144 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 145 THROUGH 451 OR RESID REMARK 3 501)) REMARK 3 ATOM PAIRS NUMBER : 3269 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 92.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4UZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0 0.1 M KCL 15% PEG REMARK 280 MME 5000, EVAPORATION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.70900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.03600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.70900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.03600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLN A 83 REMARK 465 GLN A 84 REMARK 465 LEU A 85 REMARK 465 LYS A 197 REMARK 465 ASN A 198 REMARK 465 ASP A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 SER A 425 REMARK 465 LYS A 426 REMARK 465 THR A 427 REMARK 465 PRO A 428 REMARK 465 LEU A 429 REMARK 465 LYS A 430 REMARK 465 GLY A 431 REMARK 465 GLY A 452 REMARK 465 THR A 453 REMARK 465 LYS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 GLU B 78 REMARK 465 THR B 79 REMARK 465 GLY B 80 REMARK 465 SER B 81 REMARK 465 ALA B 82 REMARK 465 GLN B 83 REMARK 465 GLN B 84 REMARK 465 LEU B 85 REMARK 465 SER B 195 REMARK 465 GLU B 196 REMARK 465 LYS B 197 REMARK 465 ASN B 198 REMARK 465 HIS B 419 REMARK 465 ASP B 420 REMARK 465 SER B 421 REMARK 465 HIS B 422 REMARK 465 LYS B 423 REMARK 465 ALA B 424 REMARK 465 SER B 425 REMARK 465 LYS B 426 REMARK 465 THR B 427 REMARK 465 PRO B 428 REMARK 465 LEU B 429 REMARK 465 LYS B 430 REMARK 465 GLY B 431 REMARK 465 GLY B 452 REMARK 465 THR B 453 REMARK 465 LYS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 144 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 194 O GLU A 196 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 128 -140.15 59.10 REMARK 500 SER A 192 168.33 65.07 REMARK 500 SER A 195 -97.25 -84.61 REMARK 500 ALA A 232 -121.74 60.29 REMARK 500 PHE A 339 76.09 -119.84 REMARK 500 GLU A 390 154.08 71.37 REMARK 500 ILE A 391 -31.86 -164.71 REMARK 500 TRP B 128 -140.53 60.00 REMARK 500 SER B 193 78.81 -105.75 REMARK 500 ALA B 232 -122.15 60.52 REMARK 500 ILE B 283 -13.10 50.70 REMARK 500 THR B 352 37.64 -97.82 REMARK 500 GLU B 390 154.80 71.30 REMARK 500 ILE B 391 -138.00 -165.05 REMARK 500 ILE B 392 -22.76 38.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 K4Q B 502 DBREF 6ZYF A 81 451 UNP Q6P988 NOTUM_HUMAN 81 451 DBREF 6ZYF B 81 451 UNP Q6P988 NOTUM_HUMAN 81 451 SEQADV 6ZYF GLU A 78 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF THR A 79 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF GLY A 80 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF ALA A 232 UNP Q6P988 SER 232 CONFLICT SEQADV 6ZYF SER A 330 UNP Q6P988 CYS 330 CONFLICT SEQADV 6ZYF GLY A 452 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF THR A 453 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF LYS A 454 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS A 455 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS A 456 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS A 457 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS A 458 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS A 459 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS A 460 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF GLU B 78 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF THR B 79 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF GLY B 80 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF ALA B 232 UNP Q6P988 SER 232 CONFLICT SEQADV 6ZYF SER B 330 UNP Q6P988 CYS 330 CONFLICT SEQADV 6ZYF GLY B 452 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF THR B 453 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF LYS B 454 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS B 455 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS B 456 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS B 457 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS B 458 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS B 459 UNP Q6P988 EXPRESSION TAG SEQADV 6ZYF HIS B 460 UNP Q6P988 EXPRESSION TAG SEQRES 1 A 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG SEQRES 2 A 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP SEQRES 3 A 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY SEQRES 4 A 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR SEQRES 5 A 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR SEQRES 6 A 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR SEQRES 7 A 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU SEQRES 8 A 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO SEQRES 9 A 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS SEQRES 10 A 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE SEQRES 11 A 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU SEQRES 12 A 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER ALA ALA SEQRES 13 A 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA SEQRES 14 A 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL SEQRES 15 A 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS SEQRES 16 A 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS SEQRES 17 A 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP SEQRES 18 A 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN SEQRES 19 A 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL SEQRES 20 A 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP SEQRES 21 A 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS SEQRES 22 A 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR SEQRES 23 A 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS SEQRES 24 A 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS SEQRES 25 A 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL SEQRES 26 A 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP SEQRES 27 A 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO SEQRES 28 A 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO SEQRES 29 A 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS SEQRES 1 B 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG SEQRES 2 B 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP SEQRES 3 B 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY SEQRES 4 B 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR SEQRES 5 B 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR SEQRES 6 B 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR SEQRES 7 B 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU SEQRES 8 B 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO SEQRES 9 B 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS SEQRES 10 B 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE SEQRES 11 B 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU SEQRES 12 B 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER ALA ALA SEQRES 13 B 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA SEQRES 14 B 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL SEQRES 15 B 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS SEQRES 16 B 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS SEQRES 17 B 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP SEQRES 18 B 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN SEQRES 19 B 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL SEQRES 20 B 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP SEQRES 21 B 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS SEQRES 22 B 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR SEQRES 23 B 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS SEQRES 24 B 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS SEQRES 25 B 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL SEQRES 26 B 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP SEQRES 27 B 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO SEQRES 28 B 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO SEQRES 29 B 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS SEQRES 30 B 383 HIS HIS HIS HIS HIS HIS HET NAG A 501 14 HET K4Q A 502 15 HET NAG B 501 14 HET K4Q B 502 10 HET EDO B 503 4 HET EDO B 504 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM K4Q [(2~{S})-2-AZANYL-3-OXIDANYLIDENE-PROPYL] OCTANOATE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 K4Q 2(C11 H21 N O3) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *56(H2 O) HELIX 1 AA1 ASN A 132 MET A 143 1 12 HELIX 2 AA2 ARG A 144 SER A 148 5 5 HELIX 3 AA3 THR A 159 SER A 163 5 5 HELIX 4 AA4 MET A 203 GLY A 217 1 15 HELIX 5 AA5 ARG A 218 ALA A 223 5 6 HELIX 6 AA6 ALA A 232 LEU A 252 1 21 HELIX 7 AA7 ALA A 286 ASN A 299 1 14 HELIX 8 AA8 PRO A 303 ARG A 308 1 6 HELIX 9 AA9 GLU A 314 PHE A 319 5 6 HELIX 10 AB1 PHE A 320 TYR A 325 1 6 HELIX 11 AB2 PRO A 326 LEU A 328 5 3 HELIX 12 AB3 ASP A 340 ASP A 347 1 8 HELIX 13 AB4 GLY A 359 LEU A 375 1 17 HELIX 14 AB5 ARG A 394 ASP A 399 5 6 HELIX 15 AB6 LEU A 407 LEU A 418 1 12 HELIX 16 AB7 ASN B 132 MET B 143 1 12 HELIX 17 AB8 ARG B 144 SER B 148 5 5 HELIX 18 AB9 THR B 159 SER B 163 5 5 HELIX 19 AC1 MET B 203 GLY B 217 1 15 HELIX 20 AC2 ARG B 218 ALA B 223 5 6 HELIX 21 AC3 ALA B 232 LEU B 252 1 21 HELIX 22 AC4 ALA B 286 ASN B 299 1 14 HELIX 23 AC5 PRO B 303 PHE B 310 1 8 HELIX 24 AC6 GLU B 314 PHE B 319 5 6 HELIX 25 AC7 PHE B 320 TYR B 325 1 6 HELIX 26 AC8 PRO B 326 LEU B 328 5 3 HELIX 27 AC9 GLU B 341 ASP B 347 1 7 HELIX 28 AD1 GLN B 357 LYS B 376 1 20 HELIX 29 AD2 ARG B 394 ASP B 399 5 6 HELIX 30 AD3 LEU B 407 LEU B 418 1 12 SHEET 1 AA110 THR A 155 ARG A 156 0 SHEET 2 AA110 LEU A 89 LEU A 93 -1 N LEU A 89 O ARG A 156 SHEET 3 AA110 GLY A 108 LYS A 112 -1 O TYR A 109 N HIS A 92 SHEET 4 AA110 ASN A 176 ILE A 180 -1 O PHE A 179 N TYR A 110 SHEET 5 AA110 ARG A 119 LEU A 124 1 N LEU A 121 O ASN A 176 SHEET 6 AA110 VAL A 225 SER A 231 1 O ALA A 229 N LEU A 122 SHEET 7 AA110 GLN A 258 ASP A 264 1 O ARG A 260 N LEU A 228 SHEET 8 AA110 VAL A 332 VAL A 335 1 O VAL A 335 N ALA A 263 SHEET 9 AA110 SER A 381 ALA A 383 1 O PHE A 382 N VAL A 334 SHEET 10 AA110 HIS A 435 VAL A 437 1 O LEU A 436 N ALA A 383 SHEET 1 AA2 2 GLN A 401 VAL A 402 0 SHEET 2 AA2 2 THR A 405 SER A 406 -1 O THR A 405 N VAL A 402 SHEET 1 AA310 THR B 155 ARG B 156 0 SHEET 2 AA310 LEU B 89 LEU B 93 -1 N LEU B 89 O ARG B 156 SHEET 3 AA310 GLY B 108 LYS B 112 -1 O TYR B 109 N HIS B 92 SHEET 4 AA310 ASN B 176 ILE B 180 -1 O PHE B 179 N TYR B 110 SHEET 5 AA310 ARG B 119 LEU B 124 1 N PHE B 123 O ILE B 180 SHEET 6 AA310 VAL B 225 SER B 231 1 O ALA B 229 N LEU B 122 SHEET 7 AA310 GLN B 258 ASP B 264 1 O ARG B 260 N LEU B 228 SHEET 8 AA310 VAL B 332 VAL B 335 1 O VAL B 335 N ALA B 263 SHEET 9 AA310 SER B 381 ALA B 383 1 O PHE B 382 N VAL B 334 SHEET 10 AA310 HIS B 435 VAL B 437 1 O LEU B 436 N ALA B 383 SHEET 1 AA4 2 PHE B 339 ASP B 340 0 SHEET 2 AA4 2 LEU B 387 SER B 388 1 O SER B 388 N PHE B 339 SHEET 1 AA5 2 GLN B 401 VAL B 402 0 SHEET 2 AA5 2 THR B 405 SER B 406 -1 O THR B 405 N VAL B 402 SSBOND 1 CYS A 101 CYS A 183 1555 1555 2.03 SSBOND 2 CYS A 130 CYS A 136 1555 1555 2.03 SSBOND 3 CYS A 279 CYS A 285 1555 1555 2.03 SSBOND 4 CYS A 306 CYS A 318 1555 1555 2.03 SSBOND 5 CYS A 386 CYS A 449 1555 1555 2.03 SSBOND 6 CYS A 413 CYS A 432 1555 1555 2.03 SSBOND 7 CYS A 440 CYS A 445 1555 1555 2.03 SSBOND 8 CYS B 101 CYS B 183 1555 1555 2.03 SSBOND 9 CYS B 130 CYS B 136 1555 1555 2.03 SSBOND 10 CYS B 279 CYS B 285 1555 1555 2.03 SSBOND 11 CYS B 306 CYS B 318 1555 1555 2.03 SSBOND 12 CYS B 386 CYS B 449 1555 1555 2.03 SSBOND 13 CYS B 413 CYS B 432 1555 1555 2.03 SSBOND 14 CYS B 440 CYS B 445 1555 1555 2.03 LINK ND2 ASN A 96 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN B 96 C1 NAG B 501 1555 1555 1.44 CRYST1 75.418 184.072 61.811 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016178 0.00000