HEADER PROTEIN BINDING 31-JUL-20 6ZYG TITLE EMFOURIN (M4IN) FROM SERRATIA PROTEAMACULANS, M4 FAMILY PEPTIDASE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEALYSIN-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA PROTEAMACULANS; SOURCE 3 ORGANISM_TAXID: 28151; SOURCE 4 GENE: PASS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23C KEYWDS METALLOPROTEASE INHIBITOR, M4 FAMILY PEPTIDASES, PROTEALYSIN OPERON, KEYWDS 2 PROTEIN BINDING EXPDTA SOLUTION NMR; SOLUTION SCATTERING NUMMDL 20 AUTHOR T.N.BOZIN,K.N.CHUKHONTSEVA,P.V.KONAREV,E.V.BOCHAROV,I.V.DEMIDYUK REVDAT 2 19-JUN-24 6ZYG 1 REMARK REVDAT 1 18-AUG-21 6ZYG 0 JRNL AUTH T.N.BOZIN,K.N.CHUKHONTSEVA,P.V.KONAREV,E.V.BOCHAROV, JRNL AUTH 2 I.V.DEMIDYUK JRNL TITL NMR STRUCTURE OF EMFOURIN, A NOVEL METALLOPROTEASE INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292106258. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 300; 303; 305; 308 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 35; 35; 35; 35; 35 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM; 1 ATM; 1 REMARK 210 ATM REMARK 210 SAMPLE CONTENTS : 0.37 MM 13C-99%,15N-99% PROTEIN, REMARK 210 5.76 MM NA2HPO4, 12.24 MM REMARK 210 NAH2PO4, 1.5 MM TMSP, 0.05 % REMARK 210 NAN3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D HNHA; 3D HNHB; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D REMARK 210 1H-13C NOESY AROMATIC; 2D 1H-15N REMARK 210 TROSY-HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC, CONSTANT TIME; 2D 1H- REMARK 210 13C HSQC AROMATIC, CONSTANT TIME; REMARK 210 2D 1H-13C{15N} SPIN-ECHO REMARK 210 DIFFERENCE CT-HSQC, EXPERIMENT REMARK 210 TO MEASURE J(C-N); 2D 1H-13C{ REMARK 210 13CO} SPIN-ECHO DIFFERENCE CT- REMARK 210 HSQC, EXPERIMENT TO MEASURE J(C- REMARK 210 CO); 2D 1H-13C{13CA} SPIN-ECHO REMARK 210 DIFFERENCE CT-HSQC, EXPERIMENT REMARK 210 TO MEASURE J(CD-CA) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, MOLMOL, TALOS-N REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS (WITH REMARK 210 MINIMAL CYANA TARGET FUNCTION) REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 169.48 -47.98 REMARK 500 1 ASN A 8 -169.96 -125.51 REMARK 500 1 PHE A 21 -42.05 -148.36 REMARK 500 1 ALA A 28 -70.31 -75.61 REMARK 500 1 GLN A 62 157.79 63.71 REMARK 500 1 SER A 82 -166.91 -120.04 REMARK 500 1 SER A 87 -177.29 -171.67 REMARK 500 1 ALA A 98 108.38 -50.91 REMARK 500 2 PRO A 3 169.38 -48.02 REMARK 500 2 PHE A 21 -53.05 -150.34 REMARK 500 2 PRO A 25 100.68 -47.95 REMARK 500 2 GLN A 62 157.86 63.55 REMARK 500 2 SER A 68 -71.72 -89.42 REMARK 500 2 ASP A 70 -54.54 -120.54 REMARK 500 2 ALA A 98 107.92 -51.07 REMARK 500 3 PRO A 3 168.13 -47.93 REMARK 500 3 ASP A 64 113.58 -165.45 REMARK 500 3 SER A 68 -179.74 -62.58 REMARK 500 3 ASP A 70 -69.77 -102.94 REMARK 500 3 SER A 82 -165.42 -126.97 REMARK 500 3 SER A 87 -179.53 -171.62 REMARK 500 4 PRO A 3 172.12 -48.02 REMARK 500 4 LEU A 4 156.27 -49.81 REMARK 500 4 VAL A 6 152.77 -49.23 REMARK 500 4 LEU A 27 33.49 -94.72 REMARK 500 4 ALA A 28 -70.09 -61.92 REMARK 500 4 PRO A 66 -173.19 -69.74 REMARK 500 4 SER A 87 -177.73 -171.22 REMARK 500 4 ALA A 98 108.47 -50.01 REMARK 500 4 LYS A 107 -61.07 -90.47 REMARK 500 5 LYS A 2 73.41 59.55 REMARK 500 5 PRO A 3 160.35 -47.91 REMARK 500 5 LEU A 4 161.91 61.29 REMARK 500 5 PRO A 5 96.48 -69.80 REMARK 500 5 LEU A 27 33.66 -94.99 REMARK 500 5 PRO A 66 -173.78 -69.78 REMARK 500 5 SER A 68 -179.71 -59.84 REMARK 500 5 SER A 87 -179.00 -173.96 REMARK 500 5 LYS A 107 -61.69 -93.87 REMARK 500 6 PRO A 3 168.98 -47.98 REMARK 500 6 PHE A 23 -71.03 -126.06 REMARK 500 6 PRO A 25 102.02 -48.00 REMARK 500 6 PRO A 66 -177.07 -69.74 REMARK 500 6 SER A 68 -179.28 -62.76 REMARK 500 6 SER A 82 -166.35 -100.18 REMARK 500 6 ALA A 98 108.31 -50.80 REMARK 500 7 PRO A 3 170.91 -48.03 REMARK 500 7 VAL A 6 151.07 -49.82 REMARK 500 7 ALA A 22 -74.18 -44.12 REMARK 500 7 LEU A 27 33.72 -95.49 REMARK 500 REMARK 500 THIS ENTRY HAS 157 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDHN7 RELATED DB: SASBDB REMARK 900 M4IN REMARK 900 RELATED ID: 34546 RELATED DB: BMRB REMARK 900 EMFOURIN (M4IN) FROM SERRATIA PROTEAMACULANS, M4 FAMILY PEPTIDASE REMARK 900 INHIBITOR DBREF1 6ZYG A 1 113 UNP A0A1X9WII3_9GAMM DBREF2 6ZYG A A0A1X9WII3 1 113 SEQADV 6ZYG SER A 68 UNP A0A1X9WII CYS 68 ENGINEERED MUTATION SEQRES 1 A 113 MET LYS PRO LEU PRO VAL LEU ASN GLN ASP THR VAL ILE SEQRES 2 A 113 GLU LEU ALA ARG GLU GLY GLY PHE ALA PHE ILE PRO LYS SEQRES 3 A 113 LEU ALA GLY GLN ARG ARG ILE ALA LEU ALA ASP ILE THR SEQRES 4 A 113 PRO GLU GLN ARG GLN ARG LEU ASN GLN LEU LEU ASN GLN SEQRES 5 A 113 THR LEU PRO TYR ALA GLN GLU GLU GLY GLN PRO ASP SER SEQRES 6 A 113 PRO GLY SER GLY ASP GLN ARG TYR PHE ARG VAL GLN ILE SEQRES 7 A 113 SER TYR TYR SER GLN THR LEU ARG SER GLU ILE VAL LEU SEQRES 8 A 113 LEU ILE PRO GLU THR SER ALA PRO GLN ALA LEU VAL ASP SEQRES 9 A 113 LEU TRP LYS THR GLY GLN VAL ASP GLU HELIX 1 AA1 ILE A 24 ALA A 28 5 5 HELIX 2 AA2 ALA A 36 ILE A 38 5 3 HELIX 3 AA3 THR A 39 LEU A 54 1 16 HELIX 4 AA4 PRO A 55 ALA A 57 5 3 HELIX 5 AA5 THR A 96 ALA A 98 5 3 HELIX 6 AA6 PRO A 99 THR A 108 1 10 SHEET 1 AA1 4 GLN A 30 ALA A 34 0 SHEET 2 AA1 4 THR A 11 GLY A 20 -1 N ILE A 13 O ILE A 33 SHEET 3 AA1 4 GLN A 71 TYR A 81 -1 O SER A 79 N VAL A 12 SHEET 4 AA1 4 ARG A 86 PRO A 94 -1 O ILE A 89 N ILE A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1