HEADER SIGNALING PROTEIN 03-AUG-20 6ZZ4 TITLE CRYSTAL STRUCTURE OF THE PTPN2 C216G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: T-CELL PROTEIN-TYROSINE PHOSPHATASE,TCPTP; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN2, PTPT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MECHALY,J.BERTHELET,Q.NIAN,M.PARLATO,N.CERF-BENSUSSAN,A.HAOUZ, AUTHOR 2 F.RODRIGUES-LIMA REVDAT 3 31-JAN-24 6ZZ4 1 REMARK REVDAT 2 09-MAR-22 6ZZ4 1 JRNL REVDAT 1 18-AUG-21 6ZZ4 0 JRNL AUTH Q.NIAN,J.BERTHELET,M.PARLATO,A.E.MECHALY,R.LIU,J.M.DUPRET, JRNL AUTH 2 N.CERF-BENSUSSAN,A.HAOUZ,F.RODRIGUES LIMA JRNL TITL STRUCTURAL CHARACTERIZATION OF A PATHOGENIC MUTANT OF HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATASE PTPN2 (CYS216GLY) THAT CAUSES JRNL TITL 3 VERY EARLY ONSET AUTOIMMUNE ENTEROPATHY. JRNL REF PROTEIN SCI. V. 31 538 2022 JRNL REFN ESSN 1469-896X JRNL PMID 34806245 JRNL DOI 10.1002/PRO.4246 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 25771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7100 - 5.0600 0.99 2827 148 0.2127 0.2359 REMARK 3 2 5.0600 - 4.0100 0.99 2771 146 0.1649 0.2077 REMARK 3 3 4.0100 - 3.5100 0.99 2720 143 0.1813 0.2639 REMARK 3 4 3.5100 - 3.1900 0.99 2741 145 0.1908 0.2399 REMARK 3 5 3.1900 - 2.9600 0.99 2715 143 0.2036 0.2702 REMARK 3 6 2.9600 - 2.7800 0.99 2722 143 0.2263 0.2918 REMARK 3 7 2.7800 - 2.6400 0.98 2689 142 0.2426 0.3270 REMARK 3 8 2.6400 - 2.5300 0.98 2701 142 0.2364 0.3455 REMARK 3 9 2.5300 - 2.4300 0.95 2597 136 0.2427 0.3128 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.327 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4691 REMARK 3 ANGLE : 1.037 6358 REMARK 3 CHIRALITY : 0.056 679 REMARK 3 PLANARITY : 0.007 820 REMARK 3 DIHEDRAL : 5.623 614 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 280) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6089 -21.3961 -4.9664 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.3880 REMARK 3 T33: 0.4032 T12: 0.0286 REMARK 3 T13: 0.0073 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.0960 L22: 0.9733 REMARK 3 L33: 3.7012 L12: 0.0416 REMARK 3 L13: 0.6547 L23: 0.4841 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.4486 S13: 0.0956 REMARK 3 S21: 0.0396 S22: 0.0257 S23: 0.1201 REMARK 3 S31: -0.0121 S32: -0.6379 S33: 0.0367 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 278) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1802 -33.8607 -34.2253 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.2769 REMARK 3 T33: 0.3268 T12: 0.0244 REMARK 3 T13: 0.0406 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.8875 L22: 2.2073 REMARK 3 L33: 3.2174 L12: 0.4545 REMARK 3 L13: 0.5168 L23: 0.4492 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.0975 S13: -0.0351 REMARK 3 S21: -0.2221 S22: 0.0315 S23: -0.2257 REMARK 3 S31: -0.0535 S32: 0.5670 S33: -0.0620 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 278) REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25798 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.11780 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.64040 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1L8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL PH 8.5, 2 M AMMONIUM REMARK 280 PHOSPHATE, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.44500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 281 REMARK 465 ASP A 282 REMARK 465 SER A 283 REMARK 465 SER A 284 REMARK 465 ILE A 285 REMARK 465 GLN A 286 REMARK 465 LYS A 287 REMARK 465 ARG A 288 REMARK 465 TRP A 289 REMARK 465 LYS A 290 REMARK 465 GLU A 291 REMARK 465 LEU A 292 REMARK 465 SER A 293 REMARK 465 LYS A 294 REMARK 465 GLU A 295 REMARK 465 ASP A 296 REMARK 465 LEU A 297 REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 ALA A 300 REMARK 465 PHE A 301 REMARK 465 ASP A 302 REMARK 465 HIS A 303 REMARK 465 SER A 304 REMARK 465 PRO A 305 REMARK 465 ASN A 306 REMARK 465 LYS A 307 REMARK 465 ILE A 308 REMARK 465 MET A 309 REMARK 465 THR A 310 REMARK 465 GLU A 311 REMARK 465 LYS A 312 REMARK 465 TYR A 313 REMARK 465 ASN A 314 REMARK 465 MET B 1 REMARK 465 ILE B 279 REMARK 465 LYS B 280 REMARK 465 GLY B 281 REMARK 465 ASP B 282 REMARK 465 SER B 283 REMARK 465 SER B 284 REMARK 465 ILE B 285 REMARK 465 GLN B 286 REMARK 465 LYS B 287 REMARK 465 ARG B 288 REMARK 465 TRP B 289 REMARK 465 LYS B 290 REMARK 465 GLU B 291 REMARK 465 LEU B 292 REMARK 465 SER B 293 REMARK 465 LYS B 294 REMARK 465 GLU B 295 REMARK 465 ASP B 296 REMARK 465 LEU B 297 REMARK 465 SER B 298 REMARK 465 PRO B 299 REMARK 465 ALA B 300 REMARK 465 PHE B 301 REMARK 465 ASP B 302 REMARK 465 HIS B 303 REMARK 465 SER B 304 REMARK 465 PRO B 305 REMARK 465 ASN B 306 REMARK 465 LYS B 307 REMARK 465 ILE B 308 REMARK 465 MET B 309 REMARK 465 THR B 310 REMARK 465 GLU B 311 REMARK 465 LYS B 312 REMARK 465 TYR B 313 REMARK 465 ASN B 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 7 O HOH B 501 2.03 REMARK 500 OD1 ASP B 50 O HOH B 502 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 41 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU B 237 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 123 145.61 -173.08 REMARK 500 GLN A 125 92.28 -69.99 REMARK 500 ASP A 130 -151.56 -124.93 REMARK 500 ILE A 220 -58.48 -136.47 REMARK 500 ILE A 259 113.45 62.78 REMARK 500 CYS B 123 146.08 -170.14 REMARK 500 ASP B 130 -152.02 -123.62 REMARK 500 ILE B 220 -61.62 -134.54 REMARK 500 ILE B 259 113.27 67.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 41 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 606 DISTANCE = 6.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 DBREF 6ZZ4 A 1 314 UNP P17706 PTN2_HUMAN 1 314 DBREF 6ZZ4 B 1 314 UNP P17706 PTN2_HUMAN 1 314 SEQADV 6ZZ4 GLY A 216 UNP P17706 CYS 216 ENGINEERED MUTATION SEQADV 6ZZ4 GLY B 216 UNP P17706 CYS 216 ENGINEERED MUTATION SEQRES 1 A 314 MET PRO THR THR ILE GLU ARG GLU PHE GLU GLU LEU ASP SEQRES 2 A 314 THR GLN ARG ARG TRP GLN PRO LEU TYR LEU GLU ILE ARG SEQRES 3 A 314 ASN GLU SER HIS ASP TYR PRO HIS ARG VAL ALA LYS PHE SEQRES 4 A 314 PRO GLU ASN ARG ASN ARG ASN ARG TYR ARG ASP VAL SER SEQRES 5 A 314 PRO TYR ASP HIS SER ARG VAL LYS LEU GLN ASN ALA GLU SEQRES 6 A 314 ASN ASP TYR ILE ASN ALA SER LEU VAL ASP ILE GLU GLU SEQRES 7 A 314 ALA GLN ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO SEQRES 8 A 314 ASN THR CYS CYS HIS PHE TRP LEU MET VAL TRP GLN GLN SEQRES 9 A 314 LYS THR LYS ALA VAL VAL MET LEU ASN ARG ILE VAL GLU SEQRES 10 A 314 LYS GLU SER VAL LYS CYS ALA GLN TYR TRP PRO THR ASP SEQRES 11 A 314 ASP GLN GLU MET LEU PHE LYS GLU THR GLY PHE SER VAL SEQRES 12 A 314 LYS LEU LEU SER GLU ASP VAL LYS SER TYR TYR THR VAL SEQRES 13 A 314 HIS LEU LEU GLN LEU GLU ASN ILE ASN SER GLY GLU THR SEQRES 14 A 314 ARG THR ILE SER HIS PHE HIS TYR THR THR TRP PRO ASP SEQRES 15 A 314 PHE GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE SEQRES 16 A 314 LEU PHE LYS VAL ARG GLU SER GLY SER LEU ASN PRO ASP SEQRES 17 A 314 HIS GLY PRO ALA VAL ILE HIS GLY SER ALA GLY ILE GLY SEQRES 18 A 314 ARG SER GLY THR PHE SER LEU VAL ASP THR CYS LEU VAL SEQRES 19 A 314 LEU MET GLU LYS GLY ASP ASP ILE ASN ILE LYS GLN VAL SEQRES 20 A 314 LEU LEU ASN MET ARG LYS TYR ARG MET GLY LEU ILE GLN SEQRES 21 A 314 THR PRO ASP GLN LEU ARG PHE SER TYR MET ALA ILE ILE SEQRES 22 A 314 GLU GLY ALA LYS CYS ILE LYS GLY ASP SER SER ILE GLN SEQRES 23 A 314 LYS ARG TRP LYS GLU LEU SER LYS GLU ASP LEU SER PRO SEQRES 24 A 314 ALA PHE ASP HIS SER PRO ASN LYS ILE MET THR GLU LYS SEQRES 25 A 314 TYR ASN SEQRES 1 B 314 MET PRO THR THR ILE GLU ARG GLU PHE GLU GLU LEU ASP SEQRES 2 B 314 THR GLN ARG ARG TRP GLN PRO LEU TYR LEU GLU ILE ARG SEQRES 3 B 314 ASN GLU SER HIS ASP TYR PRO HIS ARG VAL ALA LYS PHE SEQRES 4 B 314 PRO GLU ASN ARG ASN ARG ASN ARG TYR ARG ASP VAL SER SEQRES 5 B 314 PRO TYR ASP HIS SER ARG VAL LYS LEU GLN ASN ALA GLU SEQRES 6 B 314 ASN ASP TYR ILE ASN ALA SER LEU VAL ASP ILE GLU GLU SEQRES 7 B 314 ALA GLN ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO SEQRES 8 B 314 ASN THR CYS CYS HIS PHE TRP LEU MET VAL TRP GLN GLN SEQRES 9 B 314 LYS THR LYS ALA VAL VAL MET LEU ASN ARG ILE VAL GLU SEQRES 10 B 314 LYS GLU SER VAL LYS CYS ALA GLN TYR TRP PRO THR ASP SEQRES 11 B 314 ASP GLN GLU MET LEU PHE LYS GLU THR GLY PHE SER VAL SEQRES 12 B 314 LYS LEU LEU SER GLU ASP VAL LYS SER TYR TYR THR VAL SEQRES 13 B 314 HIS LEU LEU GLN LEU GLU ASN ILE ASN SER GLY GLU THR SEQRES 14 B 314 ARG THR ILE SER HIS PHE HIS TYR THR THR TRP PRO ASP SEQRES 15 B 314 PHE GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE SEQRES 16 B 314 LEU PHE LYS VAL ARG GLU SER GLY SER LEU ASN PRO ASP SEQRES 17 B 314 HIS GLY PRO ALA VAL ILE HIS GLY SER ALA GLY ILE GLY SEQRES 18 B 314 ARG SER GLY THR PHE SER LEU VAL ASP THR CYS LEU VAL SEQRES 19 B 314 LEU MET GLU LYS GLY ASP ASP ILE ASN ILE LYS GLN VAL SEQRES 20 B 314 LEU LEU ASN MET ARG LYS TYR ARG MET GLY LEU ILE GLN SEQRES 21 B 314 THR PRO ASP GLN LEU ARG PHE SER TYR MET ALA ILE ILE SEQRES 22 B 314 GLU GLY ALA LYS CYS ILE LYS GLY ASP SER SER ILE GLN SEQRES 23 B 314 LYS ARG TRP LYS GLU LEU SER LYS GLU ASP LEU SER PRO SEQRES 24 B 314 ALA PHE ASP HIS SER PRO ASN LYS ILE MET THR GLU LYS SEQRES 25 B 314 TYR ASN HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 B 401 5 HET PO4 B 402 5 HET PO4 B 403 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 6(O4 P 3-) FORMUL 9 HOH *173(H2 O) HELIX 1 AA1 PRO A 2 GLN A 15 1 14 HELIX 2 AA2 ARG A 17 SER A 29 1 13 HELIX 3 AA3 ARG A 35 ASN A 46 5 12 HELIX 4 AA4 GLU A 77 GLN A 80 5 4 HELIX 5 AA5 THR A 93 GLN A 104 1 12 HELIX 6 AA6 SER A 188 SER A 202 1 15 HELIX 7 AA7 ILE A 220 LYS A 238 1 19 HELIX 8 AA8 ASN A 243 LYS A 253 1 11 HELIX 9 AA9 THR A 261 LYS A 280 1 20 HELIX 10 AB1 THR B 3 GLN B 15 1 13 HELIX 11 AB2 ARG B 17 SER B 29 1 13 HELIX 12 AB3 ARG B 35 ASN B 46 5 12 HELIX 13 AB4 GLU B 77 GLN B 80 5 4 HELIX 14 AB5 THR B 93 GLN B 104 1 12 HELIX 15 AB6 SER B 188 SER B 202 1 15 HELIX 16 AB7 ILE B 220 LYS B 238 1 19 HELIX 17 AB8 ASN B 243 LYS B 253 1 11 HELIX 18 AB9 THR B 261 CYS B 278 1 18 SHEET 1 AA1 9 ARG A 58 LYS A 60 0 SHEET 2 AA1 9 TYR A 68 ILE A 76 -1 O ALA A 71 N VAL A 59 SHEET 3 AA1 9 ARG A 81 THR A 86 -1 O TYR A 83 N VAL A 74 SHEET 4 AA1 9 ALA A 212 HIS A 215 1 O ILE A 214 N ILE A 84 SHEET 5 AA1 9 ALA A 108 MET A 111 1 N VAL A 110 O VAL A 213 SHEET 6 AA1 9 THR A 169 TYR A 177 1 O PHE A 175 N MET A 111 SHEET 7 AA1 9 TYR A 154 ASN A 163 -1 N LEU A 161 O ARG A 170 SHEET 8 AA1 9 PHE A 141 VAL A 150 -1 N LEU A 146 O LEU A 158 SHEET 9 AA1 9 MET A 134 PHE A 136 -1 N PHE A 136 O PHE A 141 SHEET 1 AA2 2 VAL A 116 GLU A 117 0 SHEET 2 AA2 2 SER A 120 VAL A 121 -1 O SER A 120 N GLU A 117 SHEET 1 AA3 9 ARG B 58 LYS B 60 0 SHEET 2 AA3 9 TYR B 68 ILE B 76 -1 O ALA B 71 N VAL B 59 SHEET 3 AA3 9 ARG B 81 THR B 86 -1 O TYR B 83 N VAL B 74 SHEET 4 AA3 9 ALA B 212 HIS B 215 1 O ILE B 214 N ILE B 84 SHEET 5 AA3 9 ALA B 108 MET B 111 1 N VAL B 110 O VAL B 213 SHEET 6 AA3 9 GLU B 168 TYR B 177 1 O PHE B 175 N MET B 111 SHEET 7 AA3 9 TYR B 154 ASN B 163 -1 N HIS B 157 O HIS B 174 SHEET 8 AA3 9 PHE B 141 VAL B 150 -1 N LEU B 146 O LEU B 158 SHEET 9 AA3 9 MET B 134 PHE B 136 -1 N MET B 134 O VAL B 143 SHEET 1 AA4 2 VAL B 116 GLU B 117 0 SHEET 2 AA4 2 SER B 120 VAL B 121 -1 O SER B 120 N GLU B 117 SITE 1 AC1 12 ASP A 182 GLY A 216 SER A 217 ALA A 218 SITE 2 AC1 12 GLY A 219 ILE A 220 GLY A 221 ARG A 222 SITE 3 AC1 12 SER A 223 GLN A 260 HOH A 514 HOH A 530 SITE 1 AC2 3 THR A 155 HIS A 157 HIS A 176 SITE 1 AC3 4 GLY A 203 ASN A 206 ASP A 208 HIS A 209 SITE 1 AC4 12 ASP B 182 GLY B 216 SER B 217 ALA B 218 SITE 2 AC4 12 GLY B 219 ILE B 220 GLY B 221 ARG B 222 SITE 3 AC4 12 SER B 223 GLN B 260 HOH B 510 HOH B 522 SITE 1 AC5 6 HOH A 509 GLU B 148 THR B 155 HIS B 157 SITE 2 AC5 6 HIS B 176 HOH B 554 SITE 1 AC6 4 GLU B 41 ASN B 44 ARG B 45 ASN B 92 CRYST1 142.890 55.980 101.420 90.00 120.74 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006998 0.000000 0.004162 0.00000 SCALE2 0.000000 0.017864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011472 0.00000