HEADER NEUROPEPTIDE 04-AUG-20 6ZZE TITLE STRUCTURE OF THE TRANS-(TYR39-PRO40) FORM OF THE HUMAN SECRETED LY- TITLE 2 6/UPAR RELATED PROTEIN-1 (SLURP-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED LY-6/UPAR-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SLURP-1,ARS COMPONENT B,ARS(COMPONENT B)-81/S,ANTI- COMPND 5 NEOPLASTIC URINARY PROTEIN,ANUP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLURP1, ARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS SLURP, LY-6, THREE-FINGER PROTEIN, NICOTINIC ACETYLCHOLINE RECEPTOR, KEYWDS 2 LYNX, LYNX1, SNAKE NEUROTOXIN, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.PARAMONOV,E.N.LYUKMANOVA,Z.O.SHENKAREV REVDAT 4 14-JUN-23 6ZZE 1 REMARK REVDAT 3 17-MAR-21 6ZZE 1 OBSLTE SPRSDE REVDAT 2 10-MAR-21 6ZZE 1 OBSLTE REVDAT 1 13-JAN-21 6ZZE 0 SPRSDE 13-JAN-21 6ZZE 2MUO JRNL AUTH A.S.PARAMONOV,M.V.KOCHAROVSKAYA,A.V.TSAREV,D.S.KULBATSKII, JRNL AUTH 2 E.V.LOKTYUSHOV,M.A.SHULEPKO,M.P.KIRPICHNIKOV,E.N.LYUKMANOVA, JRNL AUTH 3 Z.O.SHENKAREV JRNL TITL STRUCTURAL DIVERSITY AND DYNAMICS OF HUMAN THREE-FINGER JRNL TITL 2 PROTEINS ACTING ON NICOTINIC ACETYLCHOLINE RECEPTORS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 33019770 JRNL DOI 10.3390/IJMS21197280 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292109299. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] SLURP-1, 95% REMARK 210 H2O/5% D2O; 0.3 MM [U-13C; U-15N] REMARK 210 SLURP-1, 95% H2O/5% D2O; 0.3 MM REMARK 210 [U-13C; U-15N] SLURP-1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N TOCSY; 3D REMARK 210 HNHA; 3D HCCH-TOCSY; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8, TOPSPIN, MDDNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 109 -165.77 -69.75 REMARK 500 1 ALA A 113 -76.12 -76.57 REMARK 500 1 THR A 126 -36.56 -151.30 REMARK 500 1 SER A 144 108.47 -50.46 REMARK 500 1 THR A 148 111.26 -160.22 REMARK 500 1 SER A 154 99.09 179.83 REMARK 500 1 ALA A 166 70.86 -100.80 REMARK 500 1 HIS A 167 -168.51 -68.48 REMARK 500 2 GLU A 108 73.34 -113.80 REMARK 500 2 PRO A 109 83.19 -69.78 REMARK 500 2 MET A 110 -73.30 -151.76 REMARK 500 2 THR A 111 70.82 -153.77 REMARK 500 2 SER A 114 91.23 -165.30 REMARK 500 2 CYS A 115 91.25 -64.50 REMARK 500 2 THR A 126 -37.14 -151.10 REMARK 500 2 VAL A 135 38.56 39.74 REMARK 500 2 PRO A 140 -169.99 -69.80 REMARK 500 2 SER A 154 92.88 -177.59 REMARK 500 2 THR A 158 112.89 -171.13 REMARK 500 3 GLU A 108 72.01 -113.95 REMARK 500 3 PRO A 109 78.05 -69.75 REMARK 500 3 MET A 110 -40.15 -173.90 REMARK 500 3 SER A 114 -39.92 -130.05 REMARK 500 3 CYS A 115 70.87 57.05 REMARK 500 3 ASP A 125 -179.85 -68.89 REMARK 500 3 THR A 126 -39.79 -150.92 REMARK 500 3 ALA A 137 107.37 -169.71 REMARK 500 3 PHE A 141 112.86 -172.72 REMARK 500 3 SER A 154 98.17 -174.56 REMARK 500 4 LYS A 107 -71.06 -74.05 REMARK 500 4 PRO A 109 93.99 -69.73 REMARK 500 4 CYS A 115 76.95 61.29 REMARK 500 4 THR A 126 -36.30 -151.57 REMARK 500 4 ALA A 137 -74.72 -74.94 REMARK 500 4 PRO A 140 -171.18 -69.72 REMARK 500 4 PRO A 145 -172.84 -69.74 REMARK 500 4 SER A 154 98.30 -179.69 REMARK 500 4 THR A 158 -165.44 -73.94 REMARK 500 4 SER A 179 -70.14 -72.07 REMARK 500 5 GLU A 108 74.70 -112.43 REMARK 500 5 PRO A 109 92.96 -69.80 REMARK 500 5 MET A 110 -52.61 -162.46 REMARK 500 5 SER A 114 89.50 -158.43 REMARK 500 5 CYS A 115 72.80 -117.63 REMARK 500 5 ARG A 116 38.54 -144.40 REMARK 500 5 ASP A 125 -179.68 -69.73 REMARK 500 5 THR A 126 -37.71 -151.44 REMARK 500 5 ALA A 137 -64.96 -98.41 REMARK 500 5 TYR A 139 67.71 -117.81 REMARK 500 5 PRO A 140 -170.29 -69.79 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34547 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE TRANS-(TYR39-PRO40) FORM OF THE HUMAN SECRETED LY- REMARK 900 6/UPAR RELATED PROTEIN-1 (SLURP-1) DBREF 6ZZE A 101 181 UNP P55000 SLUR1_HUMAN 23 103 SEQADV 6ZZE MET A 100 UNP P55000 INITIATING METHIONINE SEQRES 1 A 82 MET LEU LYS CYS TYR THR CYS LYS GLU PRO MET THR SER SEQRES 2 A 82 ALA SER CYS ARG THR ILE THR ARG CYS LYS PRO GLU ASP SEQRES 3 A 82 THR ALA CYS MET THR THR LEU VAL THR VAL GLU ALA GLU SEQRES 4 A 82 TYR PRO PHE ASN GLN SER PRO VAL VAL THR ARG SER CYS SEQRES 5 A 82 SER SER SER CYS VAL ALA THR ASP PRO ASP SER ILE GLY SEQRES 6 A 82 ALA ALA HIS LEU ILE PHE CYS CYS PHE ARG ASP LEU CYS SEQRES 7 A 82 ASN SER GLU LEU SHEET 1 AA1 2 LYS A 102 TYR A 104 0 SHEET 2 AA1 2 ILE A 118 ARG A 120 -1 N THR A 119 O CYS A 103 SHEET 1 AA2 3 VAL A 146 SER A 152 0 SHEET 2 AA2 3 ALA A 127 VAL A 133 -1 N ALA A 127 O SER A 152 SHEET 3 AA2 3 LEU A 168 CYS A 172 -1 O CYS A 172 N CYS A 128 SSBOND 1 CYS A 103 CYS A 121 1555 1555 2.84 SSBOND 2 CYS A 103 CYS A 128 1555 1555 1.92 SSBOND 3 CYS A 106 CYS A 115 1555 1555 2.09 SSBOND 4 CYS A 121 CYS A 151 1555 1555 2.11 SSBOND 5 CYS A 155 CYS A 171 1555 1555 1.95 SSBOND 6 CYS A 172 CYS A 177 1555 1555 1.99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1