HEADER NEUROPEPTIDE 04-AUG-20 6ZZF TITLE STRUCTURE OF THE CIS-(TYR39-PRO40) FORM OF THE HUMAN SECRETED LY- TITLE 2 6/UPAR RELATED PROTEIN-1 (SLURP-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED LY-6/UPAR-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SLURP-1,ARS COMPONENT B,ARS(COMPONENT B)-81/S,ANTI- COMPND 5 NEOPLASTIC URINARY PROTEIN,ANUP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLURP1, ARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS SLURP, LY-6, THREE-FINGER PROTEIN, NICOTINIC ACETYLCHOLINE RECEPTOR, KEYWDS 2 LYNX, LYNX1, SNAKE NEUROTOXIN, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.PARAMONOV,E.N.LYUKMANOVA,Z.O.SHENKAREV REVDAT 4 14-JUN-23 6ZZF 1 REMARK REVDAT 3 17-MAR-21 6ZZF 1 OBSLTE SPRSDE REVDAT 2 10-MAR-21 6ZZF 1 OBSLTE REVDAT 1 13-JAN-21 6ZZF 0 SPRSDE 13-JAN-21 6ZZF 2MUP JRNL AUTH A.S.PARAMONOV,M.V.KOCHAROVSKAYA,A.V.TSAREV,D.S.KULBATSKII, JRNL AUTH 2 E.V.LOKTYUSHOV,M.A.SHULEPKO,M.P.KIRPICHNIKOV,E.N.LYUKMANOVA, JRNL AUTH 3 Z.O.SHENKAREV JRNL TITL STRUCTURAL DIVERSITY AND DYNAMICS OF HUMAN THREE-FINGER JRNL TITL 2 PROTEINS ACTING ON NICOTINIC ACETYLCHOLINE RECEPTORS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 33019770 JRNL DOI 10.3390/IJMS21197280 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292109956. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT BAR REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] SLURP-1, 95% REMARK 210 H2O/5% D2O; 0.3 MM [U-13C; U-15N] REMARK 210 SLURP-1, 95% H2O/5% D2O; 0.3 MM REMARK 210 [U-13C; U-15N] SLURP-1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N TOCSY; 3D REMARK 210 HNHA; 3D HCCH-TOCSY; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8, TOPSPIN, MDDNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 107 -76.18 -67.49 REMARK 500 1 PRO A 109 85.36 -69.79 REMARK 500 1 MET A 110 -49.93 -138.27 REMARK 500 1 CYS A 115 58.97 -97.29 REMARK 500 1 THR A 126 22.56 -143.61 REMARK 500 1 ALA A 137 -81.11 -86.13 REMARK 500 1 TYR A 139 157.21 -47.54 REMARK 500 1 SER A 154 89.32 -177.42 REMARK 500 1 PRO A 160 -86.70 -69.79 REMARK 500 1 ALA A 166 63.53 -100.55 REMARK 500 1 HIS A 167 -78.84 -70.10 REMARK 500 1 SER A 179 35.70 -96.41 REMARK 500 2 PRO A 109 98.07 -69.72 REMARK 500 2 CYS A 115 85.15 -68.32 REMARK 500 2 THR A 126 19.36 -146.95 REMARK 500 2 VAL A 135 -63.83 -104.90 REMARK 500 2 ALA A 137 100.29 -177.97 REMARK 500 2 GLN A 143 34.70 -99.66 REMARK 500 2 SER A 154 95.96 -176.37 REMARK 500 2 ALA A 157 -167.65 -72.82 REMARK 500 2 THR A 158 99.90 -68.83 REMARK 500 2 HIS A 167 -78.90 -68.97 REMARK 500 3 PRO A 109 86.36 -69.79 REMARK 500 3 MET A 110 -45.77 -150.21 REMARK 500 3 SER A 112 -76.92 -49.42 REMARK 500 3 ALA A 113 52.56 -114.91 REMARK 500 3 SER A 114 31.62 -151.95 REMARK 500 3 CYS A 115 52.70 -95.63 REMARK 500 3 THR A 126 23.95 -145.81 REMARK 500 3 THR A 134 43.20 -100.76 REMARK 500 3 ALA A 137 101.18 -178.80 REMARK 500 3 GLU A 138 -173.84 -59.08 REMARK 500 3 PHE A 141 170.24 -51.54 REMARK 500 3 SER A 154 86.66 -175.94 REMARK 500 3 THR A 158 112.35 -164.02 REMARK 500 3 PRO A 160 -86.88 -69.78 REMARK 500 3 SER A 162 86.61 46.85 REMARK 500 3 ALA A 166 36.19 -99.64 REMARK 500 3 HIS A 167 76.17 -152.34 REMARK 500 4 GLU A 108 78.33 -151.25 REMARK 500 4 THR A 111 179.49 -55.36 REMARK 500 4 SER A 112 179.10 -56.10 REMARK 500 4 SER A 114 105.51 -47.37 REMARK 500 4 THR A 126 22.20 -145.55 REMARK 500 4 VAL A 135 -42.52 -136.95 REMARK 500 4 ALA A 137 99.91 -175.21 REMARK 500 4 PRO A 145 -171.45 -69.70 REMARK 500 4 SER A 154 94.61 -177.03 REMARK 500 4 ALA A 165 99.61 65.44 REMARK 500 4 ALA A 166 37.28 -93.18 REMARK 500 REMARK 500 THIS ENTRY HAS 241 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34548 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE CIS-(TYR39-PRO40) FORM OF THE HUMAN SECRETED LY-6/ REMARK 900 UPAR RELATED PROTEIN-1 (SLURP-1) DBREF 6ZZF A 101 181 UNP P55000 SLUR1_HUMAN 23 103 SEQADV 6ZZF MET A 100 UNP P55000 INITIATING METHIONINE SEQRES 1 A 82 MET LEU LYS CYS TYR THR CYS LYS GLU PRO MET THR SER SEQRES 2 A 82 ALA SER CYS ARG THR ILE THR ARG CYS LYS PRO GLU ASP SEQRES 3 A 82 THR ALA CYS MET THR THR LEU VAL THR VAL GLU ALA GLU SEQRES 4 A 82 TYR PRO PHE ASN GLN SER PRO VAL VAL THR ARG SER CYS SEQRES 5 A 82 SER SER SER CYS VAL ALA THR ASP PRO ASP SER ILE GLY SEQRES 6 A 82 ALA ALA HIS LEU ILE PHE CYS CYS PHE ARG ASP LEU CYS SEQRES 7 A 82 ASN SER GLU LEU SHEET 1 AA1 2 LYS A 102 TYR A 104 0 SHEET 2 AA1 2 ILE A 118 ARG A 120 -1 O THR A 119 N CYS A 103 SHEET 1 AA2 3 VAL A 146 SER A 152 0 SHEET 2 AA2 3 ALA A 127 VAL A 133 -1 N ALA A 127 O SER A 152 SHEET 3 AA2 3 LEU A 168 CYS A 172 -1 O PHE A 170 N THR A 130 SSBOND 1 CYS A 103 CYS A 128 1555 1555 1.94 SSBOND 2 CYS A 106 CYS A 115 1555 1555 1.98 SSBOND 3 CYS A 121 CYS A 151 1555 1555 2.14 SSBOND 4 CYS A 155 CYS A 171 1555 1555 1.99 SSBOND 5 CYS A 172 CYS A 177 1555 1555 2.10 CISPEP 1 TYR A 139 PRO A 140 1 0.01 CISPEP 2 TYR A 139 PRO A 140 2 -0.10 CISPEP 3 TYR A 139 PRO A 140 3 0.00 CISPEP 4 TYR A 139 PRO A 140 4 0.00 CISPEP 5 TYR A 139 PRO A 140 5 0.00 CISPEP 6 TYR A 139 PRO A 140 6 -0.07 CISPEP 7 TYR A 139 PRO A 140 7 -0.06 CISPEP 8 TYR A 139 PRO A 140 8 -0.05 CISPEP 9 TYR A 139 PRO A 140 9 -0.01 CISPEP 10 TYR A 139 PRO A 140 10 -0.12 CISPEP 11 TYR A 139 PRO A 140 11 -0.07 CISPEP 12 TYR A 139 PRO A 140 12 -0.04 CISPEP 13 TYR A 139 PRO A 140 13 -0.07 CISPEP 14 TYR A 139 PRO A 140 14 -0.02 CISPEP 15 TYR A 139 PRO A 140 15 -0.07 CISPEP 16 TYR A 139 PRO A 140 16 -0.05 CISPEP 17 TYR A 139 PRO A 140 17 -0.07 CISPEP 18 TYR A 139 PRO A 140 18 -0.02 CISPEP 19 TYR A 139 PRO A 140 19 -0.10 CISPEP 20 TYR A 139 PRO A 140 20 -0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1