HEADER TRANSFERASE 04-AUG-20 6ZZL TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN PLUS N-TERMINAL LINKER OF TITLE 2 THE ACETYLTRANSFERASE ACEF (E2P) FROM CORYNEBACTERIUM GLUTAMICUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF COMPND 3 PYRUVATE DEHYDROGENASE COMPLEX; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE COMPND 6 DEHYDROGENASE COMPLEX,PYRUVATE DEHYDROGENASE COMPLEX COMPONENT E2,PDH COMPND 7 COMPONENT E2; COMPND 8 EC: 2.3.1.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / SOURCE 3 DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025); SOURCE 4 ORGANISM_TAXID: 196627; SOURCE 5 STRAIN: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025; SOURCE 6 GENE: ACEF, SUCB, CGL2207, CG2421; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PDH, ACETYLTRANSFERASE, LIPOAMIDE, CORYNEBACTERIUM, COA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.YANG,M.BELLINZONI REVDAT 4 31-JAN-24 6ZZL 1 REMARK REVDAT 3 15-DEC-21 6ZZL 1 TITLE REVDAT 2 08-DEC-21 6ZZL 1 JRNL REVDAT 1 18-AUG-21 6ZZL 0 JRNL AUTH E.M.BRUCH,P.VILELA,L.YANG,A.BOYKO,N.LEXA-SAPART,B.RAYNAL, JRNL AUTH 2 P.M.ALZARI,M.BELLINZONI JRNL TITL ACTINOBACTERIA CHALLENGE THE PARADIGM: A UNIQUE PROTEIN JRNL TITL 2 ARCHITECTURE FOR A WELL-KNOWN, CENTRAL METABOLIC COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34819376 JRNL DOI 10.1073/PNAS.2112107118 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 72.9 REMARK 3 NUMBER OF REFLECTIONS : 40013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2268 REMARK 3 BIN FREE R VALUE : 0.2817 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 47 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.26900 REMARK 3 B22 (A**2) : -3.26900 REMARK 3 B33 (A**2) : 6.53810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.291 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.202 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.291 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.204 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5829 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7947 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2706 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 987 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5829 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 842 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4752 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -77.041 27.3336 -18.67 REMARK 3 T TENSOR REMARK 3 T11: -0.0686 T22: -0.2268 REMARK 3 T33: -0.0137 T12: 0.0155 REMARK 3 T13: -0.0171 T23: 0.017 REMARK 3 L TENSOR REMARK 3 L11: 1.9035 L22: 2.3676 REMARK 3 L33: 1.3127 L12: 0.1758 REMARK 3 L13: 0.0274 L23: 0.7988 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: 0.0697 S13: -0.0831 REMARK 3 S21: 0.0697 S22: 0.1425 S23: -0.0702 REMARK 3 S31: -0.0831 S32: -0.0702 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -63.1286 6.1318 -33.14 REMARK 3 T TENSOR REMARK 3 T11: -0.0605 T22: -0.1649 REMARK 3 T33: -0.0005 T12: -0.0646 REMARK 3 T13: 0.0479 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 1.6598 L22: 2.258 REMARK 3 L33: 0.684 L12: 0.2211 REMARK 3 L13: 0.1905 L23: 0.3329 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: -0.2378 S13: 0.042 REMARK 3 S21: -0.2378 S22: 0.2102 S23: 0.1588 REMARK 3 S31: 0.042 S32: 0.1588 S33: -0.0687 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -48.2922 30.0452 -24.3076 REMARK 3 T TENSOR REMARK 3 T11: -0.1848 T22: -0.235 REMARK 3 T33: 0.131 T12: -0.0753 REMARK 3 T13: 0.014 T23: -0.1013 REMARK 3 L TENSOR REMARK 3 L11: 2.3372 L22: 2.3003 REMARK 3 L33: 1.278 L12: 0.7708 REMARK 3 L13: 0.1513 L23: 0.3774 REMARK 3 S TENSOR REMARK 3 S11: -0.1358 S12: -0.1357 S13: -0.1218 REMARK 3 S21: -0.1357 S22: 0.2507 S23: 0.3112 REMARK 3 S31: -0.1218 S32: 0.3112 S33: -0.115 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC, XDS JAN 31, 202 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.229 REMARK 200 RESOLUTION RANGE LOW (A) : 85.196 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG1500, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.52000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.04000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.52000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 366 REMARK 465 GLY A 367 REMARK 465 ASP A 368 REMARK 465 ASN A 369 REMARK 465 VAL A 370 REMARK 465 PRO A 371 REMARK 465 TYR A 372 REMARK 465 VAL A 373 REMARK 465 THR A 374 REMARK 465 PRO A 375 REMARK 465 LEU A 376 REMARK 465 VAL A 377 REMARK 465 ARG A 378 REMARK 465 LYS A 379 REMARK 465 LEU A 380 REMARK 465 ALA A 381 REMARK 465 GLU A 382 REMARK 465 LYS A 383 REMARK 465 HIS A 384 REMARK 465 GLY A 385 REMARK 465 VAL A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 ASN A 389 REMARK 465 THR A 390 REMARK 465 VAL A 391 REMARK 465 THR A 392 REMARK 465 GLY A 393 REMARK 465 THR A 394 REMARK 465 GLY A 395 REMARK 465 ILE A 396 REMARK 465 GLY A 397 REMARK 465 GLY A 398 REMARK 465 ARG A 399 REMARK 465 ILE A 400 REMARK 465 ARG A 401 REMARK 465 LYS A 402 REMARK 465 GLN A 403 REMARK 465 ASP A 404 REMARK 465 VAL A 405 REMARK 465 LEU A 406 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 465 ALA A 409 REMARK 465 ASN A 410 REMARK 465 GLY A 411 REMARK 465 GLU A 412 REMARK 465 ALA A 413 REMARK 465 ALA A 414 REMARK 465 PRO A 415 REMARK 465 ALA A 416 REMARK 465 GLU A 417 REMARK 465 ALA A 418 REMARK 465 ALA A 419 REMARK 465 ALA A 420 REMARK 465 GLY B 366 REMARK 465 GLY B 367 REMARK 465 ASP B 368 REMARK 465 ASN B 369 REMARK 465 VAL B 370 REMARK 465 PRO B 371 REMARK 465 TYR B 372 REMARK 465 VAL B 373 REMARK 465 THR B 374 REMARK 465 PRO B 375 REMARK 465 LEU B 376 REMARK 465 VAL B 377 REMARK 465 ARG B 378 REMARK 465 LYS B 379 REMARK 465 LEU B 380 REMARK 465 ALA B 381 REMARK 465 GLU B 382 REMARK 465 LYS B 383 REMARK 465 HIS B 384 REMARK 465 GLY B 385 REMARK 465 VAL B 386 REMARK 465 ASP B 387 REMARK 465 LEU B 388 REMARK 465 ASN B 389 REMARK 465 THR B 390 REMARK 465 VAL B 391 REMARK 465 THR B 392 REMARK 465 GLY B 393 REMARK 465 THR B 394 REMARK 465 GLY B 395 REMARK 465 ILE B 396 REMARK 465 GLY B 397 REMARK 465 GLY B 398 REMARK 465 ARG B 399 REMARK 465 ILE B 400 REMARK 465 ARG B 401 REMARK 465 LYS B 402 REMARK 465 GLN B 403 REMARK 465 ASP B 404 REMARK 465 VAL B 405 REMARK 465 LEU B 406 REMARK 465 ALA B 407 REMARK 465 ALA B 408 REMARK 465 ALA B 409 REMARK 465 ASN B 410 REMARK 465 GLY B 411 REMARK 465 GLU B 412 REMARK 465 ALA B 413 REMARK 465 ALA B 414 REMARK 465 PRO B 415 REMARK 465 ALA B 416 REMARK 465 GLU B 417 REMARK 465 ALA B 418 REMARK 465 ALA B 419 REMARK 465 ALA B 420 REMARK 465 PRO B 421 REMARK 465 VAL B 422 REMARK 465 GLY C 366 REMARK 465 GLY C 367 REMARK 465 ASP C 368 REMARK 465 ASN C 369 REMARK 465 VAL C 370 REMARK 465 PRO C 371 REMARK 465 TYR C 372 REMARK 465 VAL C 373 REMARK 465 THR C 374 REMARK 465 PRO C 375 REMARK 465 LEU C 376 REMARK 465 VAL C 377 REMARK 465 ARG C 378 REMARK 465 LYS C 379 REMARK 465 LEU C 380 REMARK 465 ALA C 381 REMARK 465 GLU C 382 REMARK 465 LYS C 383 REMARK 465 HIS C 384 REMARK 465 GLY C 385 REMARK 465 VAL C 386 REMARK 465 ASP C 387 REMARK 465 LEU C 388 REMARK 465 ASN C 389 REMARK 465 THR C 390 REMARK 465 VAL C 391 REMARK 465 THR C 392 REMARK 465 GLY C 393 REMARK 465 THR C 394 REMARK 465 GLY C 395 REMARK 465 ILE C 396 REMARK 465 GLY C 397 REMARK 465 GLY C 398 REMARK 465 ARG C 399 REMARK 465 ILE C 400 REMARK 465 ARG C 401 REMARK 465 LYS C 402 REMARK 465 GLN C 403 REMARK 465 ASP C 404 REMARK 465 VAL C 405 REMARK 465 LEU C 406 REMARK 465 ALA C 407 REMARK 465 ALA C 408 REMARK 465 ALA C 409 REMARK 465 ASN C 410 REMARK 465 GLY C 411 REMARK 465 GLU C 412 REMARK 465 ALA C 413 REMARK 465 ALA C 414 REMARK 465 PRO C 415 REMARK 465 ALA C 416 REMARK 465 GLU C 417 REMARK 465 ALA C 418 REMARK 465 ALA C 419 REMARK 465 ALA C 420 REMARK 465 PRO C 421 REMARK 465 VAL C 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 GLU A 625 CG CD OE1 OE2 REMARK 470 ASP A 626 CG OD1 OD2 REMARK 470 GLU B 433 CG CD OE1 OE2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 LYS B 436 CG CD CE NZ REMARK 470 LYS B 443 CG CD CE NZ REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 LYS B 575 CG CD CE NZ REMARK 470 ASP B 626 CG OD1 OD2 REMARK 470 LYS C 436 CG CD CE NZ REMARK 470 LYS C 443 CG CD CE NZ REMARK 470 ARG C 446 CG CD NE CZ NH1 NH2 REMARK 470 MET C 453 CG SD CE REMARK 470 LYS C 454 CG CD CE NZ REMARK 470 LYS C 522 CG CD CE NZ REMARK 470 ARG C 572 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 575 CG CD CE NZ REMARK 470 LYS C 577 CG CD CE NZ REMARK 470 ASP C 626 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 512 72.41 -118.89 REMARK 500 THR A 600 70.90 -118.42 REMARK 500 THR B 600 72.05 -118.70 REMARK 500 THR C 600 71.23 -118.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 701 DBREF 6ZZL A 367 675 UNP Q8NNJ2 ODP2_CORGL 367 675 DBREF 6ZZL B 367 675 UNP Q8NNJ2 ODP2_CORGL 367 675 DBREF 6ZZL C 367 675 UNP Q8NNJ2 ODP2_CORGL 367 675 SEQADV 6ZZL GLY A 366 UNP Q8NNJ2 EXPRESSION TAG SEQADV 6ZZL GLY B 366 UNP Q8NNJ2 EXPRESSION TAG SEQADV 6ZZL GLY C 366 UNP Q8NNJ2 EXPRESSION TAG SEQRES 1 A 310 GLY GLY ASP ASN VAL PRO TYR VAL THR PRO LEU VAL ARG SEQRES 2 A 310 LYS LEU ALA GLU LYS HIS GLY VAL ASP LEU ASN THR VAL SEQRES 3 A 310 THR GLY THR GLY ILE GLY GLY ARG ILE ARG LYS GLN ASP SEQRES 4 A 310 VAL LEU ALA ALA ALA ASN GLY GLU ALA ALA PRO ALA GLU SEQRES 5 A 310 ALA ALA ALA PRO VAL SER ALA TRP SER THR LYS SER VAL SEQRES 6 A 310 ASP PRO GLU LYS ALA LYS LEU ARG GLY THR THR GLN LYS SEQRES 7 A 310 VAL ASN ARG ILE ARG GLU ILE THR ALA MET LYS THR VAL SEQRES 8 A 310 GLU ALA LEU GLN ILE SER ALA GLN LEU THR GLN LEU HIS SEQRES 9 A 310 GLU VAL ASP MET THR ARG VAL ALA GLU LEU ARG LYS LYS SEQRES 10 A 310 ASN LYS PRO ALA PHE ILE GLU LYS HIS GLY VAL ASN LEU SEQRES 11 A 310 THR TYR LEU PRO PHE PHE VAL LYS ALA VAL VAL GLU ALA SEQRES 12 A 310 LEU VAL SER HIS PRO ASN VAL ASN ALA SER PHE ASN ALA SEQRES 13 A 310 LYS THR LYS GLU MET THR TYR HIS SER SER VAL ASN LEU SEQRES 14 A 310 SER ILE ALA VAL ASP THR PRO ALA GLY LEU LEU THR PRO SEQRES 15 A 310 VAL ILE HIS ASP ALA GLN ASP LEU SER ILE PRO GLU ILE SEQRES 16 A 310 ALA LYS ALA ILE VAL ASP LEU ALA ASP ARG SER ARG ASN SEQRES 17 A 310 ASN LYS LEU LYS PRO ASN ASP LEU SER GLY GLY THR PHE SEQRES 18 A 310 THR ILE THR ASN ILE GLY SER GLU GLY ALA LEU SER ASP SEQRES 19 A 310 THR PRO ILE LEU VAL PRO PRO GLN ALA GLY ILE LEU GLY SEQRES 20 A 310 THR GLY ALA ILE VAL LYS ARG PRO VAL VAL ILE THR GLU SEQRES 21 A 310 ASP GLY ILE ASP SER ILE ALA ILE ARG GLN MET VAL PHE SEQRES 22 A 310 LEU PRO LEU THR TYR ASP HIS GLN VAL VAL ASP GLY ALA SEQRES 23 A 310 ASP ALA GLY ARG PHE LEU THR THR ILE LYS ASP ARG LEU SEQRES 24 A 310 GLU THR ALA ASN PHE GLU GLY ASP LEU GLN LEU SEQRES 1 B 310 GLY GLY ASP ASN VAL PRO TYR VAL THR PRO LEU VAL ARG SEQRES 2 B 310 LYS LEU ALA GLU LYS HIS GLY VAL ASP LEU ASN THR VAL SEQRES 3 B 310 THR GLY THR GLY ILE GLY GLY ARG ILE ARG LYS GLN ASP SEQRES 4 B 310 VAL LEU ALA ALA ALA ASN GLY GLU ALA ALA PRO ALA GLU SEQRES 5 B 310 ALA ALA ALA PRO VAL SER ALA TRP SER THR LYS SER VAL SEQRES 6 B 310 ASP PRO GLU LYS ALA LYS LEU ARG GLY THR THR GLN LYS SEQRES 7 B 310 VAL ASN ARG ILE ARG GLU ILE THR ALA MET LYS THR VAL SEQRES 8 B 310 GLU ALA LEU GLN ILE SER ALA GLN LEU THR GLN LEU HIS SEQRES 9 B 310 GLU VAL ASP MET THR ARG VAL ALA GLU LEU ARG LYS LYS SEQRES 10 B 310 ASN LYS PRO ALA PHE ILE GLU LYS HIS GLY VAL ASN LEU SEQRES 11 B 310 THR TYR LEU PRO PHE PHE VAL LYS ALA VAL VAL GLU ALA SEQRES 12 B 310 LEU VAL SER HIS PRO ASN VAL ASN ALA SER PHE ASN ALA SEQRES 13 B 310 LYS THR LYS GLU MET THR TYR HIS SER SER VAL ASN LEU SEQRES 14 B 310 SER ILE ALA VAL ASP THR PRO ALA GLY LEU LEU THR PRO SEQRES 15 B 310 VAL ILE HIS ASP ALA GLN ASP LEU SER ILE PRO GLU ILE SEQRES 16 B 310 ALA LYS ALA ILE VAL ASP LEU ALA ASP ARG SER ARG ASN SEQRES 17 B 310 ASN LYS LEU LYS PRO ASN ASP LEU SER GLY GLY THR PHE SEQRES 18 B 310 THR ILE THR ASN ILE GLY SER GLU GLY ALA LEU SER ASP SEQRES 19 B 310 THR PRO ILE LEU VAL PRO PRO GLN ALA GLY ILE LEU GLY SEQRES 20 B 310 THR GLY ALA ILE VAL LYS ARG PRO VAL VAL ILE THR GLU SEQRES 21 B 310 ASP GLY ILE ASP SER ILE ALA ILE ARG GLN MET VAL PHE SEQRES 22 B 310 LEU PRO LEU THR TYR ASP HIS GLN VAL VAL ASP GLY ALA SEQRES 23 B 310 ASP ALA GLY ARG PHE LEU THR THR ILE LYS ASP ARG LEU SEQRES 24 B 310 GLU THR ALA ASN PHE GLU GLY ASP LEU GLN LEU SEQRES 1 C 310 GLY GLY ASP ASN VAL PRO TYR VAL THR PRO LEU VAL ARG SEQRES 2 C 310 LYS LEU ALA GLU LYS HIS GLY VAL ASP LEU ASN THR VAL SEQRES 3 C 310 THR GLY THR GLY ILE GLY GLY ARG ILE ARG LYS GLN ASP SEQRES 4 C 310 VAL LEU ALA ALA ALA ASN GLY GLU ALA ALA PRO ALA GLU SEQRES 5 C 310 ALA ALA ALA PRO VAL SER ALA TRP SER THR LYS SER VAL SEQRES 6 C 310 ASP PRO GLU LYS ALA LYS LEU ARG GLY THR THR GLN LYS SEQRES 7 C 310 VAL ASN ARG ILE ARG GLU ILE THR ALA MET LYS THR VAL SEQRES 8 C 310 GLU ALA LEU GLN ILE SER ALA GLN LEU THR GLN LEU HIS SEQRES 9 C 310 GLU VAL ASP MET THR ARG VAL ALA GLU LEU ARG LYS LYS SEQRES 10 C 310 ASN LYS PRO ALA PHE ILE GLU LYS HIS GLY VAL ASN LEU SEQRES 11 C 310 THR TYR LEU PRO PHE PHE VAL LYS ALA VAL VAL GLU ALA SEQRES 12 C 310 LEU VAL SER HIS PRO ASN VAL ASN ALA SER PHE ASN ALA SEQRES 13 C 310 LYS THR LYS GLU MET THR TYR HIS SER SER VAL ASN LEU SEQRES 14 C 310 SER ILE ALA VAL ASP THR PRO ALA GLY LEU LEU THR PRO SEQRES 15 C 310 VAL ILE HIS ASP ALA GLN ASP LEU SER ILE PRO GLU ILE SEQRES 16 C 310 ALA LYS ALA ILE VAL ASP LEU ALA ASP ARG SER ARG ASN SEQRES 17 C 310 ASN LYS LEU LYS PRO ASN ASP LEU SER GLY GLY THR PHE SEQRES 18 C 310 THR ILE THR ASN ILE GLY SER GLU GLY ALA LEU SER ASP SEQRES 19 C 310 THR PRO ILE LEU VAL PRO PRO GLN ALA GLY ILE LEU GLY SEQRES 20 C 310 THR GLY ALA ILE VAL LYS ARG PRO VAL VAL ILE THR GLU SEQRES 21 C 310 ASP GLY ILE ASP SER ILE ALA ILE ARG GLN MET VAL PHE SEQRES 22 C 310 LEU PRO LEU THR TYR ASP HIS GLN VAL VAL ASP GLY ALA SEQRES 23 C 310 ASP ALA GLY ARG PHE LEU THR THR ILE LYS ASP ARG LEU SEQRES 24 C 310 GLU THR ALA ASN PHE GLU GLY ASP LEU GLN LEU HET GOL A 701 6 HET PO4 A 702 5 HET GOL B 701 6 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 PO4 O4 P 3- FORMUL 7 HOH *308(H2 O) HELIX 1 AA1 ASP A 431 LEU A 437 5 7 HELIX 2 AA2 ASN A 445 ILE A 461 1 17 HELIX 3 AA3 MET A 473 GLY A 492 1 20 HELIX 4 AA4 TYR A 497 HIS A 512 1 16 HELIX 5 AA5 ASP A 551 LEU A 555 5 5 HELIX 6 AA6 SER A 556 ASN A 573 1 18 HELIX 7 AA7 PRO A 578 SER A 582 5 5 HELIX 8 AA8 ASN A 590 GLY A 595 5 6 HELIX 9 AA9 ASP A 649 ALA A 667 1 19 HELIX 10 AB1 GLU A 670 GLN A 674 5 5 HELIX 11 AB2 ASP B 431 ARG B 438 5 8 HELIX 12 AB3 ASN B 445 ILE B 461 1 17 HELIX 13 AB4 MET B 473 GLY B 492 1 20 HELIX 14 AB5 TYR B 497 HIS B 512 1 16 HELIX 15 AB6 ASP B 551 LEU B 555 5 5 HELIX 16 AB7 SER B 556 ASN B 573 1 18 HELIX 17 AB8 PRO B 578 SER B 582 5 5 HELIX 18 AB9 ASN B 590 GLY B 595 5 6 HELIX 19 AC1 ASP B 649 ALA B 667 1 19 HELIX 20 AC2 ASP C 431 ARG C 438 5 8 HELIX 21 AC3 ASN C 445 ILE C 461 1 17 HELIX 22 AC4 MET C 473 GLY C 492 1 20 HELIX 23 AC5 TYR C 497 HIS C 512 1 16 HELIX 24 AC6 ASP C 551 LEU C 555 5 5 HELIX 25 AC7 SER C 556 ASN C 573 1 18 HELIX 26 AC8 PRO C 578 SER C 582 5 5 HELIX 27 AC9 ASN C 590 GLY C 595 5 6 HELIX 28 AD1 ASP C 649 ALA C 667 1 19 HELIX 29 AD2 GLU C 670 GLN C 674 5 5 SHEET 1 AA1 3 THR A 441 LYS A 443 0 SHEET 2 AA1 3 GLU B 525 TYR B 528 -1 O MET B 526 N GLN A 442 SHEET 3 AA1 3 ALA B 517 ASN B 520 -1 N SER B 518 O THR B 527 SHEET 1 AA2 6 GLN A 464 ASP A 472 0 SHEET 2 AA2 6 ILE A 628 ASP A 644 -1 O LEU A 639 N HIS A 469 SHEET 3 AA2 6 GLY A 609 GLY A 612 -1 N GLY A 612 O PRO A 640 SHEET 4 AA2 6 PHE A 586 THR A 589 1 N THR A 587 O LEU A 611 SHEET 5 AA2 6 LEU A 534 ILE A 536 1 N SER A 535 O PHE A 586 SHEET 6 AA2 6 VAL A 548 ILE A 549 -1 O ILE A 549 N LEU A 534 SHEET 1 AA3 3 GLN A 464 ASP A 472 0 SHEET 2 AA3 3 ILE A 628 ASP A 644 -1 O LEU A 639 N HIS A 469 SHEET 3 AA3 3 VAL A 617 GLU A 625 -1 N VAL A 617 O MET A 636 SHEET 1 AA4 3 ALA A 517 PHE A 519 0 SHEET 2 AA4 3 GLU A 525 TYR A 528 -1 O THR A 527 N SER A 518 SHEET 3 AA4 3 THR C 441 LYS C 443 -1 O GLN C 442 N MET A 526 SHEET 1 AA5 2 VAL A 538 THR A 540 0 SHEET 2 AA5 2 GLY A 543 LEU A 545 -1 O LEU A 545 N VAL A 538 SHEET 1 AA6 3 THR B 441 LYS B 443 0 SHEET 2 AA6 3 GLU C 525 TYR C 528 -1 O MET C 526 N GLN B 442 SHEET 3 AA6 3 ALA C 517 ASN C 520 -1 N SER C 518 O THR C 527 SHEET 1 AA7 6 GLN B 464 ASP B 472 0 SHEET 2 AA7 6 ILE B 628 ASP B 644 -1 O LEU B 639 N HIS B 469 SHEET 3 AA7 6 GLY B 609 GLY B 612 -1 N GLY B 612 O PRO B 640 SHEET 4 AA7 6 PHE B 586 THR B 589 1 N THR B 587 O LEU B 611 SHEET 5 AA7 6 LEU B 534 ILE B 536 1 N SER B 535 O PHE B 586 SHEET 6 AA7 6 VAL B 548 ILE B 549 -1 O ILE B 549 N LEU B 534 SHEET 1 AA8 3 GLN B 464 ASP B 472 0 SHEET 2 AA8 3 ILE B 628 ASP B 644 -1 O LEU B 639 N HIS B 469 SHEET 3 AA8 3 VAL B 617 GLU B 625 -1 N VAL B 617 O MET B 636 SHEET 1 AA9 2 VAL B 538 THR B 540 0 SHEET 2 AA9 2 GLY B 543 LEU B 545 -1 O LEU B 545 N VAL B 538 SHEET 1 AB1 6 GLN C 464 ASP C 472 0 SHEET 2 AB1 6 ILE C 628 ASP C 644 -1 O LEU C 639 N HIS C 469 SHEET 3 AB1 6 GLY C 609 GLY C 612 -1 N GLY C 612 O PRO C 640 SHEET 4 AB1 6 PHE C 586 THR C 589 1 N THR C 587 O LEU C 611 SHEET 5 AB1 6 LEU C 534 ILE C 536 1 N SER C 535 O PHE C 586 SHEET 6 AB1 6 VAL C 548 ILE C 549 -1 O ILE C 549 N LEU C 534 SHEET 1 AB2 3 GLN C 464 ASP C 472 0 SHEET 2 AB2 3 ILE C 628 ASP C 644 -1 O LEU C 639 N HIS C 469 SHEET 3 AB2 3 VAL C 617 GLU C 625 -1 N VAL C 617 O MET C 636 SHEET 1 AB3 2 VAL C 538 THR C 540 0 SHEET 2 AB3 2 GLY C 543 LEU C 545 -1 O LEU C 545 N VAL C 538 CISPEP 1 PRO A 605 PRO A 606 0 14.63 CISPEP 2 PRO B 605 PRO B 606 0 14.61 CISPEP 3 PRO C 605 PRO C 606 0 14.08 SITE 1 AC1 5 ALA A 537 ASP A 539 THR A 589 ASN A 590 SITE 2 AC1 5 SER A 593 SITE 1 AC2 10 THR A 600 HOH A 824 HOH A 836 HOH A 838 SITE 2 AC2 10 HOH A 866 THR B 600 HOH B 831 HOH B 842 SITE 3 AC2 10 THR C 600 HOH C 728 SITE 1 AC3 5 ALA B 537 ASP B 539 THR B 589 ASN B 590 SITE 2 AC3 5 SER B 593 CRYST1 170.392 170.392 67.560 90.00 90.00 120.00 P 64 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005869 0.003388 0.000000 0.00000 SCALE2 0.000000 0.006777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014802 0.00000