HEADER HYDROLASE 06-JUN-18 6A10 TITLE CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME CRYSTALLIZED BY AMMONIUM TITLE 2 SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 19-147; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KITAHARA,S.FUDO,T.YONEDA,M.NUKAGA,T.HOSHINO REVDAT 4 22-NOV-23 6A10 1 REMARK REVDAT 3 20-NOV-19 6A10 1 JRNL REVDAT 2 24-JUL-19 6A10 1 REMARK SITE ATOM REVDAT 1 20-FEB-19 6A10 0 JRNL AUTH M.KITAHARA,S.FUDO,T.YONEDA,M.NUKAGA,T.HOSHINO JRNL TITL ANISOTROPIC DISTRIBUTION OF AMMONIUM SULFATE IONS IN PROTEIN JRNL TITL 2 CRYSTALLIZATION JRNL REF CRYST.GROWTH DES. V. 19 6004 2019 JRNL REFN ESSN 1528-7505 JRNL DOI 10.1021/ACS.CGD.9B00256 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 151130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 7626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2982 - 3.5055 0.65 3446 172 0.2089 0.2147 REMARK 3 2 3.5055 - 2.7851 0.84 4376 232 0.1672 0.1689 REMARK 3 3 2.7851 - 2.4338 0.93 4862 241 0.1545 0.1555 REMARK 3 4 2.4338 - 2.2117 0.94 4940 251 0.1397 0.1603 REMARK 3 5 2.2117 - 2.0533 0.94 4904 281 0.1403 0.1599 REMARK 3 6 2.0533 - 1.9324 0.95 5017 276 0.1425 0.1643 REMARK 3 7 1.9324 - 1.8357 0.96 5034 267 0.1457 0.1543 REMARK 3 8 1.8357 - 1.7558 0.95 4939 273 0.1474 0.1698 REMARK 3 9 1.7558 - 1.6883 0.95 4983 241 0.1454 0.1421 REMARK 3 10 1.6883 - 1.6301 0.95 4949 286 0.1398 0.1527 REMARK 3 11 1.6301 - 1.5791 0.95 4959 288 0.1382 0.1542 REMARK 3 12 1.5791 - 1.5340 0.95 4892 261 0.1470 0.1630 REMARK 3 13 1.5340 - 1.4936 0.94 4978 245 0.1471 0.1712 REMARK 3 14 1.4936 - 1.4572 0.94 4886 285 0.1548 0.1775 REMARK 3 15 1.4572 - 1.4241 0.94 4884 258 0.1553 0.1902 REMARK 3 16 1.4241 - 1.3938 0.93 4843 258 0.1584 0.1784 REMARK 3 17 1.3938 - 1.3659 0.93 4884 250 0.1642 0.1996 REMARK 3 18 1.3659 - 1.3401 0.93 4893 230 0.1725 0.1919 REMARK 3 19 1.3401 - 1.3162 0.92 4789 270 0.1775 0.1982 REMARK 3 20 1.3162 - 1.2939 0.93 4818 281 0.1779 0.1910 REMARK 3 21 1.2939 - 1.2730 0.91 4760 268 0.1866 0.1916 REMARK 3 22 1.2730 - 1.2535 0.92 4761 252 0.1911 0.2084 REMARK 3 23 1.2535 - 1.2350 0.91 4830 239 0.2010 0.2248 REMARK 3 24 1.2350 - 1.2176 0.92 4808 234 0.2057 0.2278 REMARK 3 25 1.2176 - 1.2012 0.90 4648 262 0.2179 0.2345 REMARK 3 26 1.2012 - 1.1856 0.91 4770 269 0.2217 0.2280 REMARK 3 27 1.1856 - 1.1708 0.90 4756 265 0.2245 0.2335 REMARK 3 28 1.1708 - 1.1567 0.90 4601 254 0.2409 0.2354 REMARK 3 29 1.1567 - 1.1432 0.90 4779 224 0.2546 0.2620 REMARK 3 30 1.1432 - 1.1304 0.86 4515 213 0.2760 0.2695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3115 REMARK 3 ANGLE : 1.365 4203 REMARK 3 CHIRALITY : 0.093 432 REMARK 3 PLANARITY : 0.007 543 REMARK 3 DIHEDRAL : 11.748 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4WLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M AMMONIUM SULFATE, 6%(V/V) 1,4 REMARK 280 -DIOXANE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 51 HH21 ARG B 68 1.30 REMARK 500 HZ2 LYS B 97 O HOH B 301 1.38 REMARK 500 O HOH B 443 O HOH B 468 1.71 REMARK 500 O HOH B 445 O HOH B 509 1.83 REMARK 500 O HOH C 470 O HOH C 485 2.00 REMARK 500 O HOH A 459 O HOH A 470 2.01 REMARK 500 O HOH C 515 O HOH C 541 2.01 REMARK 500 O HOH A 469 O HOH B 491 2.01 REMARK 500 O HOH C 384 O HOH C 425 2.01 REMARK 500 NZ LYS B 97 O HOH B 301 2.03 REMARK 500 O HOH C 361 O HOH C 464 2.06 REMARK 500 O HOH B 528 O HOH B 531 2.06 REMARK 500 O HOH B 303 O HOH B 492 2.07 REMARK 500 O HOH B 351 O HOH B 477 2.07 REMARK 500 O HOH C 368 O HOH C 441 2.08 REMARK 500 O HOH A 334 O HOH A 363 2.09 REMARK 500 O HOH A 481 O HOH A 490 2.10 REMARK 500 O HOH A 379 O HOH A 400 2.10 REMARK 500 O HOH B 438 O HOH B 471 2.12 REMARK 500 OD1 ASN B 37 O HOH B 302 2.12 REMARK 500 O HOH C 479 O HOH C 489 2.13 REMARK 500 O HOH B 484 O HOH B 500 2.13 REMARK 500 NZ LYS B 13 O HOH B 303 2.15 REMARK 500 OD2 ASP C 101 O HOH C 301 2.16 REMARK 500 O HOH B 453 O HOH B 485 2.16 REMARK 500 O ASP C 66 O HOH C 302 2.16 REMARK 500 O HOH B 426 O HOH B 534 2.16 REMARK 500 O HOH A 465 O HOH A 497 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 513 O HOH C 495 1566 1.70 REMARK 500 O HOH A 517 O HOH C 512 1566 1.90 REMARK 500 O HOH A 472 O HOH B 471 1556 2.11 REMARK 500 O HOH A 514 O HOH C 473 1455 2.16 REMARK 500 O HOH A 526 O HOH B 494 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 115 -50.27 -125.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 563 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 566 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH B 550 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 551 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH C 539 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH C 540 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH C 541 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH C 542 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH C 543 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH C 544 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH C 545 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH C 546 DISTANCE = 7.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZXW RELATED DB: PDB REMARK 900 RELATED ID: 5ZZE RELATED DB: PDB DBREF 6A10 A 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 6A10 B 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 6A10 C 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 B 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 B 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 B 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 B 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 B 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 B 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 B 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 B 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 B 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 C 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 C 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 C 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 C 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 C 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 C 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 C 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 C 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 C 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 C 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 10(O4 S 2-) FORMUL 14 HOH *765(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ILE A 124 5 6 HELIX 9 AA9 GLY B 4 HIS B 15 1 12 HELIX 10 AB1 ASN B 19 TYR B 23 5 5 HELIX 11 AB2 SER B 24 ASN B 37 1 14 HELIX 12 AB3 PRO B 79 SER B 85 5 7 HELIX 13 AB4 ILE B 88 ASP B 101 1 14 HELIX 14 AB5 ASN B 103 ALA B 107 5 5 HELIX 15 AB6 TRP B 108 CYS B 115 1 8 HELIX 16 AB7 ASP B 119 ILE B 124 5 6 HELIX 17 AB8 GLY C 4 HIS C 15 1 12 HELIX 18 AB9 ASN C 19 TYR C 23 5 5 HELIX 19 AC1 SER C 24 ASN C 37 1 14 HELIX 20 AC2 PRO C 79 SER C 85 5 7 HELIX 21 AC3 ILE C 88 SER C 100 1 13 HELIX 22 AC4 ASN C 103 ALA C 107 5 5 HELIX 23 AC5 TRP C 108 CYS C 115 1 8 HELIX 24 AC6 ASP C 119 ARG C 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SHEET 1 AA2 3 THR B 43 ARG B 45 0 SHEET 2 AA2 3 THR B 51 TYR B 53 -1 O ASP B 52 N ASN B 44 SHEET 3 AA2 3 ILE B 58 ASN B 59 -1 O ILE B 58 N TYR B 53 SHEET 1 AA3 3 THR C 43 ARG C 45 0 SHEET 2 AA3 3 THR C 51 TYR C 53 -1 O ASP C 52 N ASN C 44 SHEET 3 AA3 3 ILE C 58 ASN C 59 -1 O ILE C 58 N TYR C 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.13 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 SSBOND 5 CYS B 6 CYS B 127 1555 1555 2.07 SSBOND 6 CYS B 30 CYS B 115 1555 1555 2.12 SSBOND 7 CYS B 64 CYS B 80 1555 1555 2.06 SSBOND 8 CYS B 76 CYS B 94 1555 1555 2.02 SSBOND 9 CYS C 6 CYS C 127 1555 1555 2.07 SSBOND 10 CYS C 30 CYS C 115 1555 1555 2.11 SSBOND 11 CYS C 64 CYS C 80 1555 1555 2.05 SSBOND 12 CYS C 76 CYS C 94 1555 1555 2.04 SITE 1 AC1 8 ARG A 14 HIS A 15 HOH A 333 HOH A 347 SITE 2 AC1 8 GLY B 4 ARG B 5 CYS B 6 GLU B 7 SITE 1 AC2 4 ASN A 74 HOH A 301 HOH A 302 ARG C 114 SITE 1 AC3 7 GLY A 71 ARG A 73 HOH A 316 HOH A 351 SITE 2 AC3 7 HOH A 376 ASN C 37 HOH C 391 SITE 1 AC4 8 PHE A 34 ARG A 114 HOH A 303 HOH A 310 SITE 2 AC4 8 HOH A 384 HOH A 391 ASN B 74 HOH B 416 SITE 1 AC5 6 ARG B 14 HIS B 15 HOH B 353 HOH B 370 SITE 2 AC5 6 HOH B 374 HOH B 380 SITE 1 AC6 8 ASN A 37 GLY B 71 ARG B 73 HOH B 304 SITE 2 AC6 8 HOH B 322 HOH B 323 HOH B 348 HOH B 399 SITE 1 AC7 4 ARG B 114 HOH B 311 ASN C 74 HOH C 341 SITE 1 AC8 1 ARG C 5 SITE 1 AC9 10 GLY A 4 ARG A 5 CYS A 6 GLU A 7 SITE 2 AC9 10 ARG C 14 HIS C 15 HOH C 328 HOH C 363 SITE 3 AC9 10 HOH C 368 HOH C 434 SITE 1 AD1 8 GLN B 41 ARG C 125 GLY C 126 CYS C 127 SITE 2 AD1 8 ARG C 128 HOH C 312 HOH C 355 HOH C 407 CRYST1 41.399 57.971 57.618 115.97 105.20 98.81 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024155 0.003746 0.009757 0.00000 SCALE2 0.000000 0.017456 0.010114 0.00000 SCALE3 0.000000 0.000000 0.020786 0.00000