HEADER TRANSFERASE 07-JUN-18 6A1K TITLE PHOSPHATE ACYLTRANSFERASE PLSX FROM B.SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE ACYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACYL-ACP PHOSPHOTRANSACYLASE,ACYL-[ACYL-CARRIER-PROTEIN]-- COMPND 5 PHOSPHATE ACYLTRANSFERASE,PHOSPHATE-ACYL-ACP ACYLTRANSFERASE; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: PLSX, YLPD, BSU15890; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PHOSPHATE ACYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.GUO,Y.JIANG REVDAT 3 27-MAR-24 6A1K 1 REMARK REVDAT 2 25-DEC-19 6A1K 1 JRNL REVDAT 1 12-JUN-19 6A1K 0 JRNL AUTH Y.JIANG,X.DAI,M.QIN,Z.GUO JRNL TITL IDENTIFICATION OF AN AMPHIPATHIC PEPTIDE SENSOR OF THE JRNL TITL 2 BACILLUS SUBTILISFLUID MEMBRANE MICRODOMAINS. JRNL REF COMMUN BIOL V. 2 316 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 31453380 JRNL DOI 10.1038/S42003-019-0562-8 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 28829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2914 - 5.5355 0.97 2075 154 0.1908 0.2039 REMARK 3 2 5.5355 - 4.3969 0.94 1920 144 0.1664 0.1943 REMARK 3 3 4.3969 - 3.8420 0.97 1950 145 0.1617 0.2063 REMARK 3 4 3.8420 - 3.4912 0.99 1983 148 0.1807 0.2238 REMARK 3 5 3.4912 - 3.2412 0.99 1973 147 0.2035 0.2318 REMARK 3 6 3.2412 - 3.0502 0.99 1972 147 0.2236 0.2229 REMARK 3 7 3.0502 - 2.8975 0.99 1965 146 0.2437 0.3051 REMARK 3 8 2.8975 - 2.7715 0.99 1974 147 0.2412 0.2781 REMARK 3 9 2.7715 - 2.6648 0.98 1900 141 0.2393 0.3057 REMARK 3 10 2.6648 - 2.5729 0.96 1912 143 0.2400 0.2674 REMARK 3 11 2.5729 - 2.4925 0.94 1846 137 0.2267 0.2546 REMARK 3 12 2.4925 - 2.4213 0.92 1825 136 0.2341 0.2784 REMARK 3 13 2.4213 - 2.3575 0.91 1781 132 0.2224 0.3102 REMARK 3 14 2.3575 - 2.3000 0.90 1755 131 0.2153 0.2632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4680 REMARK 3 ANGLE : 0.976 6370 REMARK 3 CHIRALITY : 0.054 799 REMARK 3 PLANARITY : 0.009 825 REMARK 3 DIHEDRAL : 11.338 3319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 27.9069 6.5844 20.3418 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0904 REMARK 3 T33: 0.0819 T12: 0.0208 REMARK 3 T13: -0.0079 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.1066 L22: 0.2646 REMARK 3 L33: 0.2684 L12: 0.1454 REMARK 3 L13: -0.0818 L23: -0.0186 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.0679 S13: -0.0101 REMARK 3 S21: -0.0087 S22: -0.0019 S23: -0.0792 REMARK 3 S31: 0.0374 S32: -0.0478 S33: 0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 14 OR REMARK 3 (RESID 15 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 16 THROUGH 25 OR (RESID 26 REMARK 3 THROUGH 27 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 28 REMARK 3 THROUGH 38 OR (RESID 39 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 40 THROUGH 73 OR (RESID 74 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 75 THROUGH 90 OR REMARK 3 (RESID 91 THROUGH 92 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 93 THROUGH 129 OR (RESID 130 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 131 THROUGH 132 OR REMARK 3 (RESID 133 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 134 REMARK 3 THROUGH 158 OR RESID 160 THROUGH 182 OR REMARK 3 (RESID 183 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 184 REMARK 3 THROUGH 193 OR (RESID 194 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 195 THROUGH 210 OR (RESID 211 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 212 THROUGH 232 OR (RESID 233 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD )) OR RESID REMARK 3 234 THROUGH 243 OR (RESID 244 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG )) OR RESID 245 THROUGH 246 OR REMARK 3 (RESID 247 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 248 REMARK 3 THROUGH 257 OR (RESID 258 THROUGH 261 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 262 OR (RESID 263 REMARK 3 THROUGH 264 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 265 THROUGH 266 OR (RESID 267 THROUGH 268 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 269 OR (RESID REMARK 3 270 THROUGH 276 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 277 OR (RESID 278 THROUGH 279 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 280 THROUGH 311 OR (RESID 312 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 313 THROUGH 322 REMARK 3 OR (RESID 323 THROUGH 324 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 325)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 47 OR REMARK 3 (RESID 48 THROUGH 49 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 50 THROUGH 62 OR (RESID 63 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 64 OR (RESID 65 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 66 OR (RESID 67 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 68 THROUGH 69 OR REMARK 3 (RESID 70 THROUGH 71 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 72 OR (RESID 73 THROUGH 74 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 75 THROUGH 88 OR REMARK 3 (RESID 89 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 90 REMARK 3 THROUGH 158 OR RESID 160 THROUGH 196 OR REMARK 3 (RESID 197 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 (RESID 198 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 199 REMARK 3 THROUGH 208 OR (RESID 209 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 210 THROUGH 250 OR REMARK 3 (RESID 251 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 252 REMARK 3 THROUGH 253 OR (RESID 254 THROUGH 255 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 256 THROUGH 270 OR REMARK 3 (RESID 271 THROUGH 276 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 277 THROUGH 294 OR (RESID 295 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 296 THROUGH 325)) REMARK 3 ATOM PAIRS NUMBER : 2678 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M TRIS 8.0, 0.16 M LI2SO4, 21% REMARK 280 PEG 4000, 0.012 MM CYMAL 7, 5 % T-BUTANOL, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.26000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.38000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.26000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.38000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.26000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.38000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.26000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.38000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 580 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 327 REMARK 465 GLU A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 VAL B 326 REMARK 465 LEU B 327 REMARK 465 GLU B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 THR A 48 OG1 CG2 REMARK 470 THR A 49 OG1 CG2 REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 THR A 65 OG1 CG2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 197 CD CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 ALA A 200 CB REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 GLU A 209 CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 THR A 251 OG1 CG2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 THR A 255 OG1 CG2 REMARK 470 LYS A 264 CE NZ REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 MET A 274 CG SD CE REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 HIS A 295 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 15 CE NZ REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 ASP B 59 CG OD1 OD2 REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 GLU B 89 CD OE1 OE2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 VAL B 130 CG1 CG2 REMARK 470 ASP B 133 CG OD1 OD2 REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 GLN B 194 CG CD OE1 NE2 REMARK 470 ALA B 200 CB REMARK 470 ASN B 201 CG OD1 ND2 REMARK 470 ARG B 211 NE CZ NH1 NH2 REMARK 470 LYS B 233 CE NZ REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 LYS B 244 CD CE NZ REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 258 CG CD1 CD2 REMARK 470 LEU B 263 CG CD1 CD2 REMARK 470 LYS B 264 CG CD CE NZ REMARK 470 LEU B 267 CG CD1 CD2 REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 MET B 270 CG SD CE REMARK 470 LYS B 271 CD CE NZ REMARK 470 MET B 272 CG SD CE REMARK 470 LYS B 273 CG CD CE NZ REMARK 470 MET B 274 CG SD CE REMARK 470 TYR B 276 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 278 CG OD1 ND2 REMARK 470 TYR B 279 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 GLN B 323 CG CD OE1 NE2 REMARK 470 GLU B 324 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 229 O HOH A 501 1.83 REMARK 500 O VAL A 144 O HOH A 502 1.98 REMARK 500 OH TYR A 279 O HOH A 503 1.99 REMARK 500 O HOH A 558 O HOH A 573 2.03 REMARK 500 OG1 THR B 253 O HOH B 401 2.08 REMARK 500 O HOH A 625 O HOH A 627 2.10 REMARK 500 O HOH A 554 O HOH A 568 2.13 REMARK 500 O LEU A 284 O HOH A 504 2.13 REMARK 500 OD2 ASP B 215 O HOH B 402 2.14 REMARK 500 O LYS A 197 O HOH A 505 2.15 REMARK 500 N VAL A 61 O HOH A 506 2.18 REMARK 500 OE2 GLU B 86 O HOH B 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 252 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 259 10.54 -60.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 138 ASP A 139 68.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 DBREF 6A1K A 1 326 UNP P71018 PLSX_BACSU 1 326 DBREF 6A1K B 1 326 UNP P71018 PLSX_BACSU 1 326 SEQADV 6A1K LEU A 327 UNP P71018 EXPRESSION TAG SEQADV 6A1K GLU A 328 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS A 329 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS A 330 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS A 331 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS A 332 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS A 333 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS A 334 UNP P71018 EXPRESSION TAG SEQADV 6A1K LEU B 327 UNP P71018 EXPRESSION TAG SEQADV 6A1K GLU B 328 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS B 329 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS B 330 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS B 331 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS B 332 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS B 333 UNP P71018 EXPRESSION TAG SEQADV 6A1K HIS B 334 UNP P71018 EXPRESSION TAG SEQRES 1 A 334 MET ARG ILE ALA VAL ASP ALA MET GLY GLY ASP HIS ALA SEQRES 2 A 334 PRO LYS ALA VAL ILE ASP GLY VAL ILE LYS GLY ILE GLU SEQRES 3 A 334 ALA PHE ASP ASP LEU HIS ILE THR LEU VAL GLY ASP LYS SEQRES 4 A 334 THR THR ILE GLU SER HIS LEU THR THR THR SER ASP ARG SEQRES 5 A 334 ILE THR VAL LEU HIS ALA ASP GLU VAL ILE GLU PRO THR SEQRES 6 A 334 ASP GLU PRO VAL ARG ALA VAL ARG ARG LYS LYS ASN SER SEQRES 7 A 334 SER MET VAL LEU MET ALA GLN GLU VAL ALA GLU ASN ARG SEQRES 8 A 334 ALA ASP ALA CYS ILE SER ALA GLY ASN THR GLY ALA LEU SEQRES 9 A 334 MET THR ALA GLY LEU PHE ILE VAL GLY ARG ILE LYS GLY SEQRES 10 A 334 ILE ASP ARG PRO ALA LEU ALA PRO THR LEU PRO THR VAL SEQRES 11 A 334 SER GLY ASP GLY PHE LEU LEU LEU ASP VAL GLY ALA ASN SEQRES 12 A 334 VAL ASP ALA LYS PRO GLU HIS LEU VAL GLN TYR ALA ILE SEQRES 13 A 334 MET GLY SER VAL TYR SER GLN GLN VAL ARG GLY VAL THR SEQRES 14 A 334 SER PRO ARG VAL GLY LEU LEU ASN VAL GLY THR GLU ASP SEQRES 15 A 334 LYS LYS GLY ASN GLU LEU THR LYS GLN THR PHE GLN ILE SEQRES 16 A 334 LEU LYS GLU THR ALA ASN ILE ASN PHE ILE GLY ASN VAL SEQRES 17 A 334 GLU ALA ARG ASP LEU LEU ASP ASP VAL ALA ASP VAL VAL SEQRES 18 A 334 VAL THR ASP GLY PHE THR GLY ASN VAL THR LEU LYS THR SEQRES 19 A 334 LEU GLU GLY SER ALA LEU SER ILE PHE LYS MET MET ARG SEQRES 20 A 334 ASP VAL MET THR SER THR LEU THR SER LYS LEU ALA ALA SEQRES 21 A 334 ALA VAL LEU LYS PRO LYS LEU LYS GLU MET LYS MET LYS SEQRES 22 A 334 MET GLU TYR SER ASN TYR GLY GLY ALA SER LEU PHE GLY SEQRES 23 A 334 LEU LYS ALA PRO VAL ILE LYS ALA HIS GLY SER SER ASP SEQRES 24 A 334 SER ASN ALA VAL PHE HIS ALA ILE ARG GLN ALA ARG GLU SEQRES 25 A 334 MET VAL SER GLN ASN VAL ALA ALA LEU ILE GLN GLU GLU SEQRES 26 A 334 VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 334 MET ARG ILE ALA VAL ASP ALA MET GLY GLY ASP HIS ALA SEQRES 2 B 334 PRO LYS ALA VAL ILE ASP GLY VAL ILE LYS GLY ILE GLU SEQRES 3 B 334 ALA PHE ASP ASP LEU HIS ILE THR LEU VAL GLY ASP LYS SEQRES 4 B 334 THR THR ILE GLU SER HIS LEU THR THR THR SER ASP ARG SEQRES 5 B 334 ILE THR VAL LEU HIS ALA ASP GLU VAL ILE GLU PRO THR SEQRES 6 B 334 ASP GLU PRO VAL ARG ALA VAL ARG ARG LYS LYS ASN SER SEQRES 7 B 334 SER MET VAL LEU MET ALA GLN GLU VAL ALA GLU ASN ARG SEQRES 8 B 334 ALA ASP ALA CYS ILE SER ALA GLY ASN THR GLY ALA LEU SEQRES 9 B 334 MET THR ALA GLY LEU PHE ILE VAL GLY ARG ILE LYS GLY SEQRES 10 B 334 ILE ASP ARG PRO ALA LEU ALA PRO THR LEU PRO THR VAL SEQRES 11 B 334 SER GLY ASP GLY PHE LEU LEU LEU ASP VAL GLY ALA ASN SEQRES 12 B 334 VAL ASP ALA LYS PRO GLU HIS LEU VAL GLN TYR ALA ILE SEQRES 13 B 334 MET GLY SER VAL TYR SER GLN GLN VAL ARG GLY VAL THR SEQRES 14 B 334 SER PRO ARG VAL GLY LEU LEU ASN VAL GLY THR GLU ASP SEQRES 15 B 334 LYS LYS GLY ASN GLU LEU THR LYS GLN THR PHE GLN ILE SEQRES 16 B 334 LEU LYS GLU THR ALA ASN ILE ASN PHE ILE GLY ASN VAL SEQRES 17 B 334 GLU ALA ARG ASP LEU LEU ASP ASP VAL ALA ASP VAL VAL SEQRES 18 B 334 VAL THR ASP GLY PHE THR GLY ASN VAL THR LEU LYS THR SEQRES 19 B 334 LEU GLU GLY SER ALA LEU SER ILE PHE LYS MET MET ARG SEQRES 20 B 334 ASP VAL MET THR SER THR LEU THR SER LYS LEU ALA ALA SEQRES 21 B 334 ALA VAL LEU LYS PRO LYS LEU LYS GLU MET LYS MET LYS SEQRES 22 B 334 MET GLU TYR SER ASN TYR GLY GLY ALA SER LEU PHE GLY SEQRES 23 B 334 LEU LYS ALA PRO VAL ILE LYS ALA HIS GLY SER SER ASP SEQRES 24 B 334 SER ASN ALA VAL PHE HIS ALA ILE ARG GLN ALA ARG GLU SEQRES 25 B 334 MET VAL SER GLN ASN VAL ALA ALA LEU ILE GLN GLU GLU SEQRES 26 B 334 VAL LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 401 5 HET SO4 A 402 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *259(H2 O) HELIX 1 AA1 PRO A 14 PHE A 28 1 15 HELIX 2 AA2 ASP A 38 LEU A 46 1 9 HELIX 3 AA3 GLU A 67 LYS A 75 1 9 HELIX 4 AA4 SER A 78 GLU A 89 1 12 HELIX 5 AA5 ASN A 100 VAL A 112 1 13 HELIX 6 AA6 LYS A 147 VAL A 165 1 19 HELIX 7 AA7 ASN A 186 GLU A 198 1 13 HELIX 8 AA8 ARG A 211 ASP A 216 5 6 HELIX 9 AA9 ASP A 224 THR A 251 1 28 HELIX 10 AB1 LYS A 257 LEU A 263 5 7 HELIX 11 AB2 LYS A 264 GLU A 275 1 12 HELIX 12 AB3 TYR A 276 GLY A 280 5 5 HELIX 13 AB4 ASP A 299 GLN A 316 1 18 HELIX 14 AB5 ASN A 317 VAL A 326 1 10 HELIX 15 AB6 PRO B 14 PHE B 28 1 15 HELIX 16 AB7 ASP B 38 LEU B 46 1 9 HELIX 17 AB8 GLU B 67 LYS B 75 1 9 HELIX 18 AB9 SER B 78 GLU B 89 1 12 HELIX 19 AC1 ASN B 100 ILE B 111 1 12 HELIX 20 AC2 LYS B 147 VAL B 165 1 19 HELIX 21 AC3 ASN B 186 GLU B 198 1 13 HELIX 22 AC4 ARG B 211 ASP B 216 5 6 HELIX 23 AC5 ASP B 224 VAL B 249 1 26 HELIX 24 AC6 SER B 252 VAL B 262 1 11 HELIX 25 AC7 VAL B 262 MET B 274 1 13 HELIX 26 AC8 MET B 274 TYR B 279 1 6 HELIX 27 AC9 ASP B 299 GLN B 316 1 18 HELIX 28 AD1 ASN B 317 GLU B 325 1 9 SHEET 1 AA1 7 ILE A 53 HIS A 57 0 SHEET 2 AA1 7 HIS A 32 GLY A 37 1 N LEU A 35 O LEU A 56 SHEET 3 AA1 7 ARG A 2 ASP A 6 1 N VAL A 5 O THR A 34 SHEET 4 AA1 7 ALA A 94 SER A 97 1 O ALA A 94 N ALA A 4 SHEET 5 AA1 7 VAL A 291 LYS A 293 1 O ILE A 292 N CYS A 95 SHEET 6 AA1 7 ALA A 282 PHE A 285 -1 N ALA A 282 O LYS A 293 SHEET 7 AA1 7 ALA A 122 ALA A 124 -1 N ALA A 124 O SER A 283 SHEET 1 AA2 5 THR A 126 LEU A 127 0 SHEET 2 AA2 5 PHE A 135 LEU A 138 -1 O PHE A 135 N LEU A 127 SHEET 3 AA2 5 VAL A 220 VAL A 222 1 O VAL A 221 N LEU A 136 SHEET 4 AA2 5 ARG A 172 ASN A 177 1 N GLY A 174 O VAL A 220 SHEET 5 AA2 5 ASN A 203 GLU A 209 1 O ILE A 205 N VAL A 173 SHEET 1 AA3 7 ILE B 53 HIS B 57 0 SHEET 2 AA3 7 HIS B 32 GLY B 37 1 N LEU B 35 O THR B 54 SHEET 3 AA3 7 ARG B 2 ASP B 6 1 N VAL B 5 O THR B 34 SHEET 4 AA3 7 ALA B 94 SER B 97 1 O ALA B 94 N ALA B 4 SHEET 5 AA3 7 VAL B 291 LYS B 293 1 O ILE B 292 N CYS B 95 SHEET 6 AA3 7 ALA B 282 PHE B 285 -1 N ALA B 282 O LYS B 293 SHEET 7 AA3 7 ALA B 122 ALA B 124 -1 N ALA B 124 O SER B 283 SHEET 1 AA4 5 THR B 126 LEU B 127 0 SHEET 2 AA4 5 PHE B 135 LEU B 138 -1 O PHE B 135 N LEU B 127 SHEET 3 AA4 5 VAL B 220 VAL B 222 1 O VAL B 221 N LEU B 136 SHEET 4 AA4 5 ARG B 172 ASN B 177 1 N GLY B 174 O VAL B 220 SHEET 5 AA4 5 ASN B 203 GLU B 209 1 O ASN B 203 N VAL B 173 CISPEP 1 ALA A 13 PRO A 14 0 5.86 CISPEP 2 ALA B 13 PRO B 14 0 4.79 CISPEP 3 LEU B 138 ASP B 139 0 -16.80 SITE 1 AC1 5 ARG A 166 ARG A 308 ARG A 311 HOH A 516 SITE 2 AC1 5 HOH A 542 SITE 1 AC2 4 THR A 255 SER A 256 LYS A 257 LYS B 23 CRYST1 108.520 144.760 84.840 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011787 0.00000