HEADER BIOSYNTHETIC PROTEIN 11-JUN-18 6A2E TITLE APO STRUCTURE OF THE KDO HYDROXYLASE KDOO, A NON-HEME FE(II) TITLE 2 ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KDO HYDROXYLASE, KDOO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID HYDROXYLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLACIDIPHILUM INFERNORUM (ISOLATE V4); SOURCE 3 ORGANISM_TAXID: 481448; SOURCE 4 STRAIN: V4; SOURCE 5 GENE: MINF_1012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FE(II)/O2/ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE, KDO2-LIPID A KEYWDS 2 DIOXYGENASE, DEOXYSUGAR DIOXYGENASE, LPS BIOSYNTHESIS, BIOSYNTHETIC KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.S.CHUNG,C.W.PEMBLE,S.H.JOO REVDAT 3 27-MAR-24 6A2E 1 REMARK REVDAT 2 24-OCT-18 6A2E 1 JRNL REVDAT 1 05-SEP-18 6A2E 0 JRNL AUTH S.H.JOO,C.W.PEMBLE,E.G.YANG,C.R.H.RAETZ,H.S.CHUNG JRNL TITL BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO AN FE(II)/ JRNL TITL 2 ALPHA-KETOGLUTARATE/O2-DEPENDENT DIOXYGENASE, KDO JRNL TITL 3 3-HYDROXYLASE (KDOO). JRNL REF J. MOL. BIOL. V. 430 4036 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30092253 JRNL DOI 10.1016/J.JMB.2018.07.029 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6146 - 4.0331 1.00 2739 144 0.1570 0.1932 REMARK 3 2 4.0331 - 3.2016 1.00 2596 137 0.1482 0.1976 REMARK 3 3 3.2016 - 2.7970 1.00 2566 134 0.1678 0.1851 REMARK 3 4 2.7970 - 2.5413 0.99 2541 135 0.1650 0.2355 REMARK 3 5 2.5413 - 2.3591 0.99 2526 134 0.1557 0.1908 REMARK 3 6 2.3591 - 2.2201 0.97 2449 129 0.1573 0.2422 REMARK 3 7 2.2201 - 2.1089 0.97 2462 131 0.1461 0.2238 REMARK 3 8 2.1089 - 2.0171 0.95 2413 129 0.1550 0.2157 REMARK 3 9 2.0171 - 1.9394 0.91 2291 124 0.1573 0.2287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2489 REMARK 3 ANGLE : 0.767 3367 REMARK 3 CHIRALITY : 0.051 363 REMARK 3 PLANARITY : 0.006 432 REMARK 3 DIHEDRAL : 15.243 1500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7339 3.4038 6.3404 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.1165 REMARK 3 T33: 0.1064 T12: 0.0144 REMARK 3 T13: -0.0011 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.3208 L22: 0.6585 REMARK 3 L33: 0.4110 L12: -0.0097 REMARK 3 L13: 0.0562 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0450 S13: 0.0826 REMARK 3 S21: -0.1030 S22: -0.0426 S23: 0.0245 REMARK 3 S31: -0.0375 S32: -0.0148 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0087 -11.3923 17.2609 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0999 REMARK 3 T33: 0.0944 T12: 0.0046 REMARK 3 T13: -0.0064 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.2252 L22: 0.4585 REMARK 3 L33: 0.3601 L12: 0.1618 REMARK 3 L13: 0.0380 L23: -0.1944 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.0132 S13: 0.0140 REMARK 3 S21: -0.0546 S22: -0.0223 S23: 0.0422 REMARK 3 S31: 0.0616 S32: -0.0507 S33: 0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.939 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 200MM LITHIUM REMARK 280 SULFATE, 50% V/V PEG 400, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.94800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.77050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.94800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.77050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 MET A 4 REMARK 465 ASP A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 68 REMARK 465 ALA A 308 REMARK 465 ALA A 309 REMARK 465 ALA A 310 REMARK 465 LEU A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 569 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 72 CB SER A 72 OG -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 119.29 -165.19 REMARK 500 ALA A 122 -139.30 -123.51 REMARK 500 ALA A 135 118.41 -163.09 REMARK 500 PHE A 267 93.52 85.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 752 DISTANCE = 6.30 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 405 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YKA RELATED DB: PDB REMARK 900 CO(II) BOUND MIKDOO REMARK 900 RELATED ID: 5YVZ RELATED DB: PDB REMARK 900 FE(II)/AKG BOUND MIKDOO REMARK 900 RELATED ID: 5YW0 RELATED DB: PDB REMARK 900 FE(II)/SIN BOUND MIKDOO DBREF 6A2E A 1 305 UNP B3DUR4 B3DUR4_METI4 1 305 SEQADV 6A2E LYS A 306 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E LEU A 307 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E ALA A 308 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E ALA A 309 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E ALA A 310 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E LEU A 311 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E GLU A 312 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E HIS A 313 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E HIS A 314 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E HIS A 315 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E HIS A 316 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E HIS A 317 UNP B3DUR4 EXPRESSION TAG SEQADV 6A2E HIS A 318 UNP B3DUR4 EXPRESSION TAG SEQRES 1 A 318 MET PHE PRO MET ASP THR LYS THR ASN GLU GLN PRO ILE SEQRES 2 A 318 ILE GLN PHE ASP ALA GLU SER TRP GLU ALA GLU PHE THR SEQRES 3 A 318 GLN GLU ILE GLN ASP LYS ALA ILE GLU GLY LEU GLU SER SEQRES 4 A 318 GLY SER VAL LEU PHE PHE PRO LYS LEU ASN PHE PRO LEU SEQRES 5 A 318 LEU THR GLU GLU LEU LYS PHE LEU ASP PRO THR TRP VAL SEQRES 6 A 318 SER GLY ALA LYS ASN ILE SER TYR ASP PRO ARG SER ALA SEQRES 7 A 318 THR LEU LYS GLY VAL GLU GLY LYS SER GLU ASP LEU ARG SEQRES 8 A 318 LEU LEU SER GLY LEU LEU LYS ARG TYR ALA GLU LYS THR SEQRES 9 A 318 ALA ALA PHE LEU HIS LEU LEU PHE PRO PHE TYR GLY SER SEQRES 10 A 318 SER LEU LYS ILE ALA ARG THR SER PHE ARG PRO VAL GLU SEQRES 11 A 318 ILE SER GLY ARG ALA THR SER ALA ARG LYS ASP ASP THR SEQRES 12 A 318 ARG LEU HIS VAL ASP ALA PHE PRO SER SER PRO THR GLY SEQRES 13 A 318 GLY GLU ARG ILE LEU ARG VAL PHE SER ASN ILE ASN PRO SEQRES 14 A 318 GLN GLY LYS PRO ARG SER TRP ARG ILE GLY GLU PRO PHE SEQRES 15 A 318 GLN ASN TYR LEU ASN HIS LEU LEU PRO GLN LEU SER PRO SEQRES 16 A 318 PRO ALA PRO GLY LYS ARG PHE LEU LEU TYR LEU PHE GLY SEQRES 17 A 318 ILE THR LYS GLY TYR ARG SER LEU TYR ASP HIS TYR MET SEQRES 18 A 318 LEU GLU LEU HIS ASP LYS GLY LYS LEU ASP LEU GLU TYR SEQRES 19 A 318 GLN LYS ASN SER PRO GLN VAL ALA PHE ASP PHE PRO ALA SEQRES 20 A 318 GLY SER THR TRP ILE VAL PHE THR ASP GLN VAL LEU HIS SEQRES 21 A 318 ALA VAL ASP LYS GLY GLN PHE LEU LEU GLU GLN THR PHE SEQRES 22 A 318 HIS LEU LYS VAL ASN ALA LEU LYS HIS PRO GLU LYS SER SEQRES 23 A 318 PRO LEU LYS LEU LEU GLU THR ALA LEU ASN LYS LYS LEU SEQRES 24 A 318 VAL SER SER GLU SER PHE LYS LEU ALA ALA ALA LEU GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET ACT A 401 4 HET ACT A 402 4 HET ACT A 403 4 HET SO4 A 404 5 HET PG4 A 405 10 HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 SO4 O4 S 2- FORMUL 6 PG4 C8 H18 O5 FORMUL 7 HOH *252(H2 O) HELIX 1 AA1 THR A 26 SER A 39 1 14 HELIX 2 AA2 LEU A 53 LEU A 60 5 8 HELIX 3 AA3 ASP A 61 VAL A 65 5 5 HELIX 4 AA4 LYS A 86 PHE A 112 1 27 HELIX 5 AA5 TYR A 115 LEU A 119 5 5 HELIX 6 AA6 GLU A 130 ARG A 134 5 5 HELIX 7 AA7 PRO A 181 LEU A 190 1 10 HELIX 8 AA8 PRO A 191 LEU A 193 5 3 HELIX 9 AA9 GLY A 199 PHE A 207 1 9 HELIX 10 AB1 SER A 215 ASP A 231 1 17 HELIX 11 AB2 ASP A 231 SER A 238 1 8 HELIX 12 AB3 LYS A 276 LEU A 280 5 5 HELIX 13 AB4 HIS A 282 LYS A 285 5 4 HELIX 14 AB5 SER A 286 ASN A 296 1 11 SHEET 1 AA1 8 ILE A 13 GLN A 15 0 SHEET 2 AA1 8 VAL A 42 PHE A 45 1 O PHE A 44 N ILE A 14 SHEET 3 AA1 8 THR A 250 PHE A 254 -1 O THR A 250 N PHE A 45 SHEET 4 AA1 8 ARG A 159 ASN A 166 -1 N PHE A 164 O TRP A 251 SHEET 5 AA1 8 LEU A 268 LEU A 275 -1 O LEU A 275 N ARG A 159 SHEET 6 AA1 8 LYS A 120 ARG A 127 -1 N ALA A 122 O THR A 272 SHEET 7 AA1 8 ILE A 71 ASP A 74 -1 N TYR A 73 O THR A 124 SHEET 8 AA1 8 THR A 79 LYS A 81 -1 O LYS A 81 N SER A 72 SHEET 1 AA2 3 VAL A 241 PHE A 245 0 SHEET 2 AA2 3 ARG A 174 ILE A 178 -1 N ARG A 174 O PHE A 245 SHEET 3 AA2 3 HIS A 260 LYS A 264 -1 O ASP A 263 N SER A 175 SITE 1 AC1 4 ARG A 174 TRP A 176 LEU A 268 HOH A 577 SITE 1 AC2 3 ARG A 76 HIS A 274 HOH A 631 SITE 1 AC3 2 LYS A 200 ARG A 214 SITE 1 AC4 7 LYS A 81 LYS A 276 ASN A 278 SER A 304 SITE 2 AC4 7 HOH A 615 HOH A 627 HOH A 660 SITE 1 AC5 4 LEU A 110 PHE A 202 TYR A 205 HOH A 640 CRYST1 45.896 59.541 116.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021788 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008597 0.00000