HEADER HYDROLASE 12-JUN-18 6A2R TITLE MYCOBACTERIUM TUBERCULOSIS LEXA C-DOMAIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEXA REPRESSOR; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: LEXA C-DOMAIN II; COMPND 5 EC: 3.4.21.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: LEXA, RV2720, MTCY05A6.41; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MYCOBACTERIUM TUBERCULOSIS, LEXA, SOS RESPONSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.CHANDRAN,R.SRIKALAIVANI,A.PAUL,M.VIJAYAN REVDAT 3 03-APR-24 6A2R 1 REMARK REVDAT 2 20-NOV-19 6A2R 1 JRNL REVDAT 1 23-JAN-19 6A2R 0 JRNL AUTH A.V.CHANDRAN,R.SRIKALAIVANI,A.PAUL,M.VIJAYAN JRNL TITL BIOCHEMICAL CHARACTERIZATION OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 LEXA AND STRUCTURAL STUDIES OF ITS C-TERMINAL SEGMENT. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 41 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30644844 JRNL DOI 10.1107/S2059798318016066 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1653 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.20000 REMARK 3 B22 (A**2) : 6.20000 REMARK 3 B33 (A**2) : -12.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4571 ; 0.012 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 4367 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6216 ; 1.443 ; 1.755 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10163 ; 0.641 ; 1.722 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 589 ; 6.892 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;26.405 ;19.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;15.735 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.448 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5093 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 779 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2373 ; 2.521 ; 2.548 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2374 ; 2.521 ; 2.548 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2956 ; 3.609 ; 3.811 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2957 ; 3.609 ; 3.811 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2198 ; 2.621 ; 2.774 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2198 ; 2.621 ; 2.774 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3261 ; 3.822 ; 4.079 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4621 ; 5.899 ;31.417 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4622 ; 5.899 ;31.420 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 137 A 236 1 REMARK 3 1 B 137 B 236 1 REMARK 3 1 C 137 C 236 1 REMARK 3 1 D 137 D 236 1 REMARK 3 1 E 137 E 236 1 REMARK 3 1 F 137 F 236 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 1411 ; 5.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 1411 ; 7.16 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 1411 ; 5.46 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 1411 ; 4.59 ; 0.50 REMARK 3 TIGHT THERMAL 1 E (A**2): 1411 ; 6.60 ; 0.50 REMARK 3 TIGHT THERMAL 1 F (A**2): 1411 ; 5.83 ; 0.50 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.525 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 43.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IUMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL, 200MM MEGNESIUM REMARK 280 CHLORIDE, 5% GLYCEROL, 25%PEG 3350, PH 8.5, MICROBATCH, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.67667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.35333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 PRO A 128 REMARK 465 ILE A 129 REMARK 465 LEU A 130 REMARK 465 ALA A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 ALA A 134 REMARK 465 VAL A 135 REMARK 465 GLU A 136 REMARK 465 ASP A 137 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 PRO B 128 REMARK 465 ILE B 129 REMARK 465 LEU B 130 REMARK 465 ALA B 131 REMARK 465 GLU B 132 REMARK 465 GLU B 133 REMARK 465 ALA B 134 REMARK 465 VAL B 135 REMARK 465 GLU B 136 REMARK 465 ASP B 137 REMARK 465 GLY C 126 REMARK 465 GLY C 127 REMARK 465 PRO C 128 REMARK 465 ILE C 129 REMARK 465 LEU C 130 REMARK 465 ALA C 131 REMARK 465 GLU C 132 REMARK 465 GLU C 133 REMARK 465 ALA C 134 REMARK 465 VAL C 135 REMARK 465 GLU C 136 REMARK 465 ASP C 137 REMARK 465 GLY D 126 REMARK 465 GLY D 127 REMARK 465 PRO D 128 REMARK 465 ILE D 129 REMARK 465 LEU D 130 REMARK 465 ALA D 131 REMARK 465 GLU D 132 REMARK 465 GLU D 133 REMARK 465 ALA D 134 REMARK 465 VAL D 135 REMARK 465 GLU D 136 REMARK 465 ASP D 137 REMARK 465 GLY E 126 REMARK 465 GLY E 127 REMARK 465 PRO E 128 REMARK 465 ILE E 129 REMARK 465 LEU E 130 REMARK 465 ALA E 131 REMARK 465 GLU E 132 REMARK 465 GLU E 133 REMARK 465 ALA E 134 REMARK 465 VAL E 135 REMARK 465 GLU E 136 REMARK 465 ASP E 137 REMARK 465 GLY F 126 REMARK 465 GLY F 127 REMARK 465 PRO F 128 REMARK 465 ILE F 129 REMARK 465 LEU F 130 REMARK 465 ALA F 131 REMARK 465 GLU F 132 REMARK 465 GLU F 133 REMARK 465 ALA F 134 REMARK 465 VAL F 135 REMARK 465 GLU F 136 REMARK 465 ASP F 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 201 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 201 49.80 -100.24 REMARK 500 HIS A 211 63.49 -116.09 REMARK 500 VAL B 146 -53.06 -123.13 REMARK 500 ARG B 201 50.20 -98.24 REMARK 500 HIS B 211 63.67 -116.17 REMARK 500 VAL C 146 -53.15 -122.96 REMARK 500 ARG C 201 58.65 -94.68 REMARK 500 HIS C 211 63.75 -116.25 REMARK 500 VAL D 146 -53.19 -122.80 REMARK 500 HIS D 211 63.57 -116.33 REMARK 500 VAL E 146 -53.24 -123.04 REMARK 500 ARG E 201 45.60 -94.52 REMARK 500 HIS E 211 63.81 -116.30 REMARK 500 VAL F 146 -58.58 -122.93 REMARK 500 ARG F 201 50.12 -97.62 REMARK 500 HIS F 211 63.92 -116.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 340 DISTANCE = 7.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 301 DBREF 6A2R A 126 236 UNP P9WHR7 LEXA_MYCTU 126 236 DBREF 6A2R B 126 236 UNP P9WHR7 LEXA_MYCTU 126 236 DBREF 6A2R C 126 236 UNP P9WHR7 LEXA_MYCTU 126 236 DBREF 6A2R D 126 236 UNP P9WHR7 LEXA_MYCTU 126 236 DBREF 6A2R E 126 236 UNP P9WHR7 LEXA_MYCTU 126 236 DBREF 6A2R F 126 236 UNP P9WHR7 LEXA_MYCTU 126 236 SEQRES 1 A 111 GLY GLY PRO ILE LEU ALA GLU GLU ALA VAL GLU ASP VAL SEQRES 2 A 111 PHE PRO LEU PRO ARG GLU LEU VAL GLY GLU GLY THR LEU SEQRES 3 A 111 PHE LEU LEU LYS VAL ILE GLY ASP SER MET VAL GLU ALA SEQRES 4 A 111 ALA ILE CME ASP GLY ASP TRP VAL VAL VAL ARG GLN GLN SEQRES 5 A 111 ASN VAL ALA ASP ASN GLY ASP ILE VAL ALA ALA MET ILE SEQRES 6 A 111 ASP GLY GLU ALA THR VAL LYS THR PHE LYS ARG ALA GLY SEQRES 7 A 111 GLY GLN VAL TRP LEU MET PRO HIS ASN PRO ALA PHE ASP SEQRES 8 A 111 PRO ILE PRO GLY ASN ASP ALA THR VAL LEU GLY LYS VAL SEQRES 9 A 111 VAL THR VAL ILE ARG LYS VAL SEQRES 1 B 111 GLY GLY PRO ILE LEU ALA GLU GLU ALA VAL GLU ASP VAL SEQRES 2 B 111 PHE PRO LEU PRO ARG GLU LEU VAL GLY GLU GLY THR LEU SEQRES 3 B 111 PHE LEU LEU LYS VAL ILE GLY ASP SER MET VAL GLU ALA SEQRES 4 B 111 ALA ILE CME ASP GLY ASP TRP VAL VAL VAL ARG GLN GLN SEQRES 5 B 111 ASN VAL ALA ASP ASN GLY ASP ILE VAL ALA ALA MET ILE SEQRES 6 B 111 ASP GLY GLU ALA THR VAL LYS THR PHE LYS ARG ALA GLY SEQRES 7 B 111 GLY GLN VAL TRP LEU MET PRO HIS ASN PRO ALA PHE ASP SEQRES 8 B 111 PRO ILE PRO GLY ASN ASP ALA THR VAL LEU GLY LYS VAL SEQRES 9 B 111 VAL THR VAL ILE ARG LYS VAL SEQRES 1 C 111 GLY GLY PRO ILE LEU ALA GLU GLU ALA VAL GLU ASP VAL SEQRES 2 C 111 PHE PRO LEU PRO ARG GLU LEU VAL GLY GLU GLY THR LEU SEQRES 3 C 111 PHE LEU LEU LYS VAL ILE GLY ASP SER MET VAL GLU ALA SEQRES 4 C 111 ALA ILE CME ASP GLY ASP TRP VAL VAL VAL ARG GLN GLN SEQRES 5 C 111 ASN VAL ALA ASP ASN GLY ASP ILE VAL ALA ALA MET ILE SEQRES 6 C 111 ASP GLY GLU ALA THR VAL LYS THR PHE LYS ARG ALA GLY SEQRES 7 C 111 GLY GLN VAL TRP LEU MET PRO HIS ASN PRO ALA PHE ASP SEQRES 8 C 111 PRO ILE PRO GLY ASN ASP ALA THR VAL LEU GLY LYS VAL SEQRES 9 C 111 VAL THR VAL ILE ARG LYS VAL SEQRES 1 D 111 GLY GLY PRO ILE LEU ALA GLU GLU ALA VAL GLU ASP VAL SEQRES 2 D 111 PHE PRO LEU PRO ARG GLU LEU VAL GLY GLU GLY THR LEU SEQRES 3 D 111 PHE LEU LEU LYS VAL ILE GLY ASP SER MET VAL GLU ALA SEQRES 4 D 111 ALA ILE CME ASP GLY ASP TRP VAL VAL VAL ARG GLN GLN SEQRES 5 D 111 ASN VAL ALA ASP ASN GLY ASP ILE VAL ALA ALA MET ILE SEQRES 6 D 111 ASP GLY GLU ALA THR VAL LYS THR PHE LYS ARG ALA GLY SEQRES 7 D 111 GLY GLN VAL TRP LEU MET PRO HIS ASN PRO ALA PHE ASP SEQRES 8 D 111 PRO ILE PRO GLY ASN ASP ALA THR VAL LEU GLY LYS VAL SEQRES 9 D 111 VAL THR VAL ILE ARG LYS VAL SEQRES 1 E 111 GLY GLY PRO ILE LEU ALA GLU GLU ALA VAL GLU ASP VAL SEQRES 2 E 111 PHE PRO LEU PRO ARG GLU LEU VAL GLY GLU GLY THR LEU SEQRES 3 E 111 PHE LEU LEU LYS VAL ILE GLY ASP SER MET VAL GLU ALA SEQRES 4 E 111 ALA ILE CME ASP GLY ASP TRP VAL VAL VAL ARG GLN GLN SEQRES 5 E 111 ASN VAL ALA ASP ASN GLY ASP ILE VAL ALA ALA MET ILE SEQRES 6 E 111 ASP GLY GLU ALA THR VAL LYS THR PHE LYS ARG ALA GLY SEQRES 7 E 111 GLY GLN VAL TRP LEU MET PRO HIS ASN PRO ALA PHE ASP SEQRES 8 E 111 PRO ILE PRO GLY ASN ASP ALA THR VAL LEU GLY LYS VAL SEQRES 9 E 111 VAL THR VAL ILE ARG LYS VAL SEQRES 1 F 111 GLY GLY PRO ILE LEU ALA GLU GLU ALA VAL GLU ASP VAL SEQRES 2 F 111 PHE PRO LEU PRO ARG GLU LEU VAL GLY GLU GLY THR LEU SEQRES 3 F 111 PHE LEU LEU LYS VAL ILE GLY ASP SER MET VAL GLU ALA SEQRES 4 F 111 ALA ILE CME ASP GLY ASP TRP VAL VAL VAL ARG GLN GLN SEQRES 5 F 111 ASN VAL ALA ASP ASN GLY ASP ILE VAL ALA ALA MET ILE SEQRES 6 F 111 ASP GLY GLU ALA THR VAL LYS THR PHE LYS ARG ALA GLY SEQRES 7 F 111 GLY GLN VAL TRP LEU MET PRO HIS ASN PRO ALA PHE ASP SEQRES 8 F 111 PRO ILE PRO GLY ASN ASP ALA THR VAL LEU GLY LYS VAL SEQRES 9 F 111 VAL THR VAL ILE ARG LYS VAL MODRES 6A2R CME A 167 CYS MODIFIED RESIDUE MODRES 6A2R CME B 167 CYS MODIFIED RESIDUE MODRES 6A2R CME C 167 CYS MODIFIED RESIDUE MODRES 6A2R CME D 167 CYS MODIFIED RESIDUE MODRES 6A2R CME E 167 CYS MODIFIED RESIDUE MODRES 6A2R CME F 167 CYS MODIFIED RESIDUE HET CME A 167 10 HET CME B 167 10 HET CME C 167 10 HET CME D 167 10 HET CME E 167 10 HET CME F 167 10 HET PEG B 301 7 HET PEG C 301 7 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 CME 6(C5 H11 N O3 S2) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 9 HOH *238(H2 O) HELIX 1 AA1 PRO A 142 VAL A 146 5 5 HELIX 2 AA2 MET A 161 ALA A 165 5 5 HELIX 3 AA3 ASN A 221 ALA A 223 5 3 HELIX 4 AA4 PRO B 142 VAL B 146 5 5 HELIX 5 AA5 MET B 161 ALA B 165 5 5 HELIX 6 AA6 ASN B 221 ALA B 223 5 3 HELIX 7 AA7 PRO C 142 VAL C 146 5 5 HELIX 8 AA8 MET C 161 ALA C 165 5 5 HELIX 9 AA9 ASN C 221 ALA C 223 5 3 HELIX 10 AB1 PRO D 142 VAL D 146 5 5 HELIX 11 AB2 MET D 161 ALA D 165 5 5 HELIX 12 AB3 ASN D 221 ALA D 223 5 3 HELIX 13 AB4 PRO E 142 VAL E 146 5 5 HELIX 14 AB5 MET E 161 ALA E 165 5 5 HELIX 15 AB6 ASN E 221 ALA E 223 5 3 HELIX 16 AB7 PRO F 142 VAL F 146 5 5 HELIX 17 AB8 MET F 161 ALA F 165 5 5 HELIX 18 AB9 ASN F 221 ALA F 223 5 3 SHEET 1 AA1 6 LEU A 151 LYS A 155 0 SHEET 2 AA1 6 TRP A 171 GLN A 176 -1 O VAL A 174 N PHE A 152 SHEET 3 AA1 6 THR A 224 LYS A 235 -1 O ILE A 233 N TRP A 171 SHEET 4 AA1 6 THR B 224 LYS B 235 -1 O ARG B 234 N VAL A 232 SHEET 5 AA1 6 TRP B 171 GLN B 176 -1 N TRP B 171 O ILE B 233 SHEET 6 AA1 6 LEU B 151 LYS B 155 -1 N PHE B 152 O VAL B 174 SHEET 1 AA210 ILE A 218 PRO A 219 0 SHEET 2 AA210 TRP A 207 MET A 209 -1 N LEU A 208 O ILE A 218 SHEET 3 AA210 ALA A 194 LYS A 200 -1 N THR A 198 O MET A 209 SHEET 4 AA210 ILE A 185 MET A 189 -1 N VAL A 186 O LYS A 197 SHEET 5 AA210 THR A 224 LYS A 235 -1 O LEU A 226 N ALA A 187 SHEET 6 AA210 THR B 224 LYS B 235 -1 O ARG B 234 N VAL A 232 SHEET 7 AA210 ILE B 185 MET B 189 -1 N ALA B 187 O LEU B 226 SHEET 8 AA210 ALA B 194 LYS B 200 -1 O LYS B 197 N VAL B 186 SHEET 9 AA210 TRP B 207 MET B 209 -1 O MET B 209 N THR B 198 SHEET 10 AA210 ILE B 218 PRO B 219 -1 O ILE B 218 N LEU B 208 SHEET 1 AA3 6 LEU C 151 LYS C 155 0 SHEET 2 AA3 6 TRP C 171 GLN C 176 -1 O VAL C 174 N PHE C 152 SHEET 3 AA3 6 THR C 224 LYS C 235 -1 O ILE C 233 N TRP C 171 SHEET 4 AA3 6 THR D 224 LYS D 235 -1 O VAL D 232 N ARG C 234 SHEET 5 AA3 6 TRP D 171 GLN D 176 -1 N TRP D 171 O ILE D 233 SHEET 6 AA3 6 LEU D 151 LYS D 155 -1 N PHE D 152 O VAL D 174 SHEET 1 AA410 ILE C 218 PRO C 219 0 SHEET 2 AA410 TRP C 207 MET C 209 -1 N LEU C 208 O ILE C 218 SHEET 3 AA410 ALA C 194 LYS C 200 -1 N THR C 198 O MET C 209 SHEET 4 AA410 ILE C 185 MET C 189 -1 N VAL C 186 O LYS C 197 SHEET 5 AA410 THR C 224 LYS C 235 -1 O LEU C 226 N ALA C 187 SHEET 6 AA410 THR D 224 LYS D 235 -1 O VAL D 232 N ARG C 234 SHEET 7 AA410 ILE D 185 ILE D 190 -1 N ALA D 187 O LEU D 226 SHEET 8 AA410 GLU D 193 ALA D 202 -1 O LYS D 197 N VAL D 186 SHEET 9 AA410 GLN D 205 MET D 209 -1 O MET D 209 N THR D 198 SHEET 10 AA410 ILE D 218 PRO D 219 -1 O ILE D 218 N LEU D 208 SHEET 1 AA5 6 LEU E 151 LYS E 155 0 SHEET 2 AA5 6 TRP E 171 GLN E 176 -1 O VAL E 174 N PHE E 152 SHEET 3 AA5 6 THR E 224 LYS E 235 -1 O ILE E 233 N TRP E 171 SHEET 4 AA5 6 THR F 224 LYS F 235 -1 O VAL F 232 N ARG E 234 SHEET 5 AA5 6 TRP F 171 GLN F 176 -1 N TRP F 171 O ILE F 233 SHEET 6 AA5 6 LEU F 151 LYS F 155 -1 N PHE F 152 O VAL F 174 SHEET 1 AA610 ILE E 218 PRO E 219 0 SHEET 2 AA610 TRP E 207 MET E 209 -1 N LEU E 208 O ILE E 218 SHEET 3 AA610 ALA E 194 LYS E 200 -1 N THR E 198 O MET E 209 SHEET 4 AA610 ILE E 185 MET E 189 -1 N VAL E 186 O LYS E 197 SHEET 5 AA610 THR E 224 LYS E 235 -1 O LEU E 226 N ALA E 187 SHEET 6 AA610 THR F 224 LYS F 235 -1 O VAL F 232 N ARG E 234 SHEET 7 AA610 ILE F 185 ILE F 190 -1 N ALA F 187 O LEU F 226 SHEET 8 AA610 GLU F 193 LYS F 200 -1 O LYS F 197 N VAL F 186 SHEET 9 AA610 TRP F 207 MET F 209 -1 O MET F 209 N THR F 198 SHEET 10 AA610 ILE F 218 PRO F 219 -1 O ILE F 218 N LEU F 208 LINK C ILE A 166 N CME A 167 1555 1555 1.33 LINK C CME A 167 N ASP A 168 1555 1555 1.33 LINK C ILE B 166 N CME B 167 1555 1555 1.33 LINK C CME B 167 N ASP B 168 1555 1555 1.33 LINK C ILE C 166 N CME C 167 1555 1555 1.31 LINK C CME C 167 N ASP C 168 1555 1555 1.30 LINK C ILE D 166 N CME D 167 1555 1555 1.33 LINK C CME D 167 N ASP D 168 1555 1555 1.33 LINK C ILE E 166 N CME E 167 1555 1555 1.33 LINK C CME E 167 N ASP E 168 1555 1555 1.33 LINK C ILE F 166 N CME F 167 1555 1555 1.33 LINK C CME F 167 N ASP F 168 1555 1555 1.33 SITE 1 AC1 2 PHE B 139 PRO E 213 SITE 1 AC2 2 ARG C 143 HOH C 420 CRYST1 74.830 74.830 116.030 90.00 90.00 120.00 P 31 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013364 0.007715 0.000000 0.00000 SCALE2 0.000000 0.015431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008618 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.488463 -0.872581 0.002655 37.07896 1 MTRIX2 2 -0.871818 0.488159 0.040417 20.35428 1 MTRIX3 2 -0.036564 0.017427 -0.999179 77.63329 1 MTRIX1 3 0.427875 0.903548 0.022890 -1.14836 1 MTRIX2 3 -0.902508 0.428482 -0.043384 45.06108 1 MTRIX3 3 -0.049008 -0.002095 0.998796 -10.30692 1 MTRIX1 4 0.545508 -0.838102 -0.002422 -0.03540 1 MTRIX2 4 -0.838073 -0.545510 0.007224 42.55035 1 MTRIX3 4 -0.007375 -0.001911 -0.999971 88.70550 1 MTRIX1 5 0.792365 -0.609465 -0.026651 42.86791 1 MTRIX2 5 0.605314 0.790898 -0.089865 53.48342 1 MTRIX3 5 0.075848 0.055074 0.995597 -12.17229 1 MTRIX1 6 -0.922139 -0.385654 0.030499 -27.40369 1 MTRIX2 6 -0.386332 0.922129 -0.020624 10.54084 1 MTRIX3 6 -0.020170 -0.030801 -0.999322 92.19950 1