HEADER HYDROLASE 19-JUN-18 6A4D TITLE PNP-TMP BOUND OLIGORIBONUCLEASE (ORN) FROM COLWELLIA PSYCHRERYTHRAEA TITLE 2 STRAIN 34H COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGORIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLWELLIA PSYCHRERYTHRAEA (STRAIN 34H / ATCC SOURCE 3 BAA-681); SOURCE 4 ORGANISM_COMMON: VIBRIO PSYCHROERYTHUS; SOURCE 5 ORGANISM_TAXID: 167879; SOURCE 6 STRAIN: 34H / ATCC BAA-681; SOURCE 7 GENE: ORN, CPS_4379; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OLIGORIBONUCLEASE, EXONUCLEASE, COLWELLIA PSYCHRERYTHRAEA STRAIN 34H, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEE,S.PARK,J.H.LEE REVDAT 2 27-MAR-24 6A4D 1 REMARK REVDAT 1 13-MAR-19 6A4D 0 JRNL AUTH C.W.LEE,S.H.PARK,C.S.JEONG,S.S.CHA,H.PARK,J.H.LEE JRNL TITL STRUCTURAL BASIS OF SMALL RNA HYDROLYSIS BY JRNL TITL 2 OLIGORIBONUCLEASE (CPSORN) FROM COLWELLIA PSYCHRERYTHRAEA JRNL TITL 3 STRAIN 34H. JRNL REF SCI REP V. 9 2649 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30804410 JRNL DOI 10.1038/S41598-019-39641-0 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 24032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.266 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3108 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2825 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4223 ; 1.965 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6575 ; 1.063 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 7.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;39.677 ;25.070 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;16.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;27.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3374 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 600 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 4.498 ; 5.145 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1461 ; 4.499 ; 5.144 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1824 ; 6.440 ; 7.697 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1825 ; 6.439 ; 7.697 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 5.081 ; 5.656 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1647 ; 5.080 ; 5.660 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2400 ; 7.627 ; 8.346 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3670 ;11.302 ;62.392 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3637 ;11.316 ;62.309 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25387 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM TARTRATE DIBASIC, 0.1 M REMARK 280 TRIS PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.51267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.75633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.75633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 157.51267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 98 NE2 HIS B 126 1.96 REMARK 500 O ASP B 5 O HOH B 301 2.09 REMARK 500 O VAL A 54 O HOH A 301 2.14 REMARK 500 OG1 THR A 51 O HOH A 302 2.18 REMARK 500 O HOH B 329 O HOH B 345 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 307 O HOH B 307 6344 1.20 REMARK 500 O HOH B 344 O HOH B 349 6454 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 113 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 41 136.65 -173.46 REMARK 500 GLU A 64 -73.82 -57.77 REMARK 500 LYS A 145 65.44 -159.47 REMARK 500 LYS A 154 -71.22 -88.33 REMARK 500 THR A 155 -174.59 60.63 REMARK 500 ALA A 157 -90.63 -69.09 REMARK 500 HIS A 158 -86.33 53.22 REMARK 500 LEU B 37 3.83 83.88 REMARK 500 MET B 58 -168.03 -100.18 REMARK 500 PRO B 98 -135.58 -59.26 REMARK 500 LYS B 145 69.63 -153.97 REMARK 500 THR B 155 79.95 -29.46 REMARK 500 ALA B 157 -61.79 -126.80 REMARK 500 HIS B 158 -161.86 69.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RC A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RC B 202 DBREF 6A4D A 1 181 UNP Q47VZ4 ORN_COLP3 1 181 DBREF 6A4D B 1 181 UNP Q47VZ4 ORN_COLP3 1 181 SEQADV 6A4D GLY A -2 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4D SER A -1 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4D HIS A 0 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4D ALA A 163 UNP Q47VZ4 ASP 163 ENGINEERED MUTATION SEQADV 6A4D GLY B -2 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4D SER B -1 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4D HIS B 0 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4D ALA B 163 UNP Q47VZ4 ASP 163 ENGINEERED MUTATION SEQRES 1 A 184 GLY SER HIS MET ALA GLY ASN ASP SER ASN LEU ILE TRP SEQRES 2 A 184 LEU ASP LEU GLU MET THR GLY LEU GLU PRO VAL GLU ASP SEQRES 3 A 184 VAL ILE LEU GLU ILE ALA ILE ILE ILE THR ASP SER GLU SEQRES 4 A 184 LEU ASN ILE LEU ALA GLN GLY PRO ILE PHE ALA ILE SER SEQRES 5 A 184 GLN THR ASP ASP VAL LEU ASP ASN MET ASN PRO TRP CYS SEQRES 6 A 184 ILE GLU HIS HIS GLY LYS SER GLY LEU THR GLN ARG CYS SEQRES 7 A 184 ARG ASP SER GLU VAL SER LEU ALA HIS ALA THR LYS GLU SEQRES 8 A 184 SER LEU ALA PHE VAL GLN GLU TRP VAL PRO GLN GLY LYS SEQRES 9 A 184 SER PRO MET CYS GLY ASN SER ILE GLY GLN ASP ARG ARG SEQRES 10 A 184 PHE ILE ASN LYS TYR MET PRO ASP PHE GLU ASP HIS PHE SEQRES 11 A 184 HIS TYR ARG ASN LEU ASP VAL SER THR ILE LYS GLU LEU SEQRES 12 A 184 ALA LYS ARG TRP LYS PRO GLU VAL LEU GLU SER VAL VAL SEQRES 13 A 184 LYS THR GLY ALA HIS LEU ALA LEU ASP ALA ILE LYS GLU SEQRES 14 A 184 SER ILE ALA GLU LEU LYS VAL TYR ARG GLU LEU PHE PHE SEQRES 15 A 184 LYS LEU SEQRES 1 B 184 GLY SER HIS MET ALA GLY ASN ASP SER ASN LEU ILE TRP SEQRES 2 B 184 LEU ASP LEU GLU MET THR GLY LEU GLU PRO VAL GLU ASP SEQRES 3 B 184 VAL ILE LEU GLU ILE ALA ILE ILE ILE THR ASP SER GLU SEQRES 4 B 184 LEU ASN ILE LEU ALA GLN GLY PRO ILE PHE ALA ILE SER SEQRES 5 B 184 GLN THR ASP ASP VAL LEU ASP ASN MET ASN PRO TRP CYS SEQRES 6 B 184 ILE GLU HIS HIS GLY LYS SER GLY LEU THR GLN ARG CYS SEQRES 7 B 184 ARG ASP SER GLU VAL SER LEU ALA HIS ALA THR LYS GLU SEQRES 8 B 184 SER LEU ALA PHE VAL GLN GLU TRP VAL PRO GLN GLY LYS SEQRES 9 B 184 SER PRO MET CYS GLY ASN SER ILE GLY GLN ASP ARG ARG SEQRES 10 B 184 PHE ILE ASN LYS TYR MET PRO ASP PHE GLU ASP HIS PHE SEQRES 11 B 184 HIS TYR ARG ASN LEU ASP VAL SER THR ILE LYS GLU LEU SEQRES 12 B 184 ALA LYS ARG TRP LYS PRO GLU VAL LEU GLU SER VAL VAL SEQRES 13 B 184 LYS THR GLY ALA HIS LEU ALA LEU ASP ALA ILE LYS GLU SEQRES 14 B 184 SER ILE ALA GLU LEU LYS VAL TYR ARG GLU LEU PHE PHE SEQRES 15 B 184 LYS LEU HET 9RC A 201 30 HET 9RC A 202 30 HET 9RC B 201 30 HET 9RC B 202 30 HETNAM 9RC 5'-O-[(S)-HYDROXY(4-NITROPHENOXY)PHOSPHORYL]THYMIDINE HETSYN 9RC PNP-TMP FORMUL 3 9RC 4(C16 H18 N3 O10 P) FORMUL 7 HOH *147(H2 O) HELIX 1 AA1 GLY A -2 ALA A 2 5 5 HELIX 2 AA2 THR A 51 ASN A 57 1 7 HELIX 3 AA3 ASN A 59 SER A 69 1 11 HELIX 4 AA4 GLY A 70 SER A 78 1 9 HELIX 5 AA5 SER A 81 VAL A 97 1 17 HELIX 6 AA6 SER A 108 MET A 120 1 13 HELIX 7 AA7 MET A 120 ASP A 125 1 6 HELIX 8 AA8 VAL A 134 LYS A 145 1 12 HELIX 9 AA9 PRO A 146 SER A 151 5 6 HELIX 10 AB1 LEU A 159 PHE A 178 1 20 HELIX 11 AB2 THR B 51 ASP B 56 1 6 HELIX 12 AB3 ASN B 59 SER B 69 1 11 HELIX 13 AB4 GLY B 70 SER B 78 1 9 HELIX 14 AB5 SER B 81 VAL B 97 1 17 HELIX 15 AB6 SER B 108 MET B 120 1 13 HELIX 16 AB7 MET B 120 PHE B 127 1 8 HELIX 17 AB8 VAL B 134 LYS B 145 1 12 HELIX 18 AB9 PRO B 146 VAL B 152 5 7 HELIX 19 AC1 LEU B 159 PHE B 178 1 20 SHEET 1 AA1 3 ILE A 39 GLN A 42 0 SHEET 2 AA1 3 ILE A 25 THR A 33 -1 N ILE A 32 O ALA A 41 SHEET 3 AA1 3 PHE A 46 ALA A 47 -1 O PHE A 46 N ILE A 28 SHEET 1 AA2 5 ILE A 39 GLN A 42 0 SHEET 2 AA2 5 ILE A 25 THR A 33 -1 N ILE A 32 O ALA A 41 SHEET 3 AA2 5 LEU A 8 MET A 15 -1 N TRP A 10 O ILE A 31 SHEET 4 AA2 5 MET A 104 GLY A 106 1 O CYS A 105 N ILE A 9 SHEET 5 AA2 5 ASN A 131 ASP A 133 1 O LEU A 132 N MET A 104 SHEET 1 AA3 3 ILE B 39 GLN B 42 0 SHEET 2 AA3 3 ILE B 25 THR B 33 -1 N ILE B 32 O LEU B 40 SHEET 3 AA3 3 PHE B 46 ALA B 47 -1 O PHE B 46 N ILE B 28 SHEET 1 AA4 5 ILE B 39 GLN B 42 0 SHEET 2 AA4 5 ILE B 25 THR B 33 -1 N ILE B 32 O LEU B 40 SHEET 3 AA4 5 LEU B 8 MET B 15 -1 N TRP B 10 O ILE B 31 SHEET 4 AA4 5 MET B 104 GLY B 106 1 O CYS B 105 N ILE B 9 SHEET 5 AA4 5 ASN B 131 ASP B 133 1 O LEU B 132 N MET B 104 SITE 1 AC1 14 LEU A 18 ASN A 107 SER A 108 GLN A 111 SITE 2 AC1 14 SER A 135 LYS A 138 VAL A 153 GLU A 166 SITE 3 AC1 14 SER A 167 GLU A 170 9RC A 202 HOH A 351 SITE 4 AC1 14 TYR B 129 ARG B 130 SITE 1 AC2 12 GLU A 14 MET A 15 GLY A 17 LEU A 18 SITE 2 AC2 12 ASN A 59 TRP A 61 CYS A 62 HIS A 66 SITE 3 AC2 12 LYS A 154 9RC A 201 HOH A 329 HOH A 351 SITE 1 AC3 10 GLU B 14 MET B 15 GLY B 17 LEU B 18 SITE 2 AC3 10 ASN B 59 TRP B 61 CYS B 62 HIS B 66 SITE 3 AC3 10 9RC B 202 HOH B 322 SITE 1 AC4 14 TYR A 129 ARG A 130 ASN B 107 SER B 108 SITE 2 AC4 14 GLN B 111 SER B 135 LYS B 138 ALA B 163 SITE 3 AC4 14 GLU B 166 SER B 167 GLU B 170 9RC B 201 SITE 4 AC4 14 HOH B 322 HOH B 330 CRYST1 59.532 59.532 236.269 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016798 0.009698 0.000000 0.00000 SCALE2 0.000000 0.019396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004232 0.00000