HEADER HYDROLASE 19-JUN-18 6A4F TITLE SEPARATED URIDINE BOUND OLIGORIBONUCLEASE (ORN) FROM COLWELLIA TITLE 2 PSYCHRERYTHRAEA STRAIN 34H COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGORIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLWELLIA PSYCHRERYTHRAEA (STRAIN 34H / ATCC SOURCE 3 BAA-681); SOURCE 4 ORGANISM_COMMON: VIBRIO PSYCHROERYTHUS; SOURCE 5 ORGANISM_TAXID: 167879; SOURCE 6 STRAIN: 34H / ATCC BAA-681; SOURCE 7 GENE: ORN, CPS_4379; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OLIGORIBONUCLEASE, EXONUCLEASE, COLWELLIA PSYCHRERYTHRAEA STRAIN 34H, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEE,S.PARK,J.H.LEE REVDAT 2 27-MAR-24 6A4F 1 LINK REVDAT 1 13-MAR-19 6A4F 0 JRNL AUTH C.W.LEE,S.H.PARK,C.S.JEONG,S.S.CHA,H.PARK,J.H.LEE JRNL TITL STRUCTURAL BASIS OF SMALL RNA HYDROLYSIS BY JRNL TITL 2 OLIGORIBONUCLEASE (CPSORN) FROM COLWELLIA PSYCHRERYTHRAEA JRNL TITL 3 STRAIN 34H. JRNL REF SCI REP V. 9 2649 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30804410 JRNL DOI 10.1038/S41598-019-39641-0 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 20644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1031 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.515 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3080 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2806 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4182 ; 1.884 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6542 ; 1.052 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 7.796 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;39.917 ;25.139 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;17.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;25.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3330 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 588 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 4.933 ; 5.615 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1461 ; 4.930 ; 5.613 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1824 ; 6.716 ; 8.402 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1825 ; 6.716 ; 8.403 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 5.288 ; 6.020 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1617 ; 5.285 ; 6.019 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2359 ; 7.359 ; 8.897 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3595 ; 9.416 ;67.418 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3549 ; 9.397 ;67.201 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.05333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.05333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 156.10667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 398 O HOH A 399 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 34 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 113 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 37 11.87 82.99 REMARK 500 LYS A 145 64.29 -154.34 REMARK 500 THR A 155 135.26 55.40 REMARK 500 LEU B 37 14.09 83.00 REMARK 500 ASN B 57 65.80 -100.60 REMARK 500 SER B 69 65.63 154.33 REMARK 500 THR B 155 108.70 67.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 411 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 369 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 370 DISTANCE = 7.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 U5P A 201 O2P 99.3 REMARK 620 3 U5P A 202 O3' 167.0 88.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD1 REMARK 620 2 U5P B 201 O3P 97.9 REMARK 620 3 HOH B 301 O 80.9 168.0 REMARK 620 4 HOH B 302 O 81.8 89.9 78.1 REMARK 620 5 HOH B 355 O 94.1 93.6 98.4 174.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 203 DBREF 6A4F A 1 181 UNP Q47VZ4 ORN_COLP3 1 181 DBREF 6A4F B 1 181 UNP Q47VZ4 ORN_COLP3 1 181 SEQADV 6A4F HIS A -1 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4F MET A 0 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4F HIS B -1 UNP Q47VZ4 EXPRESSION TAG SEQADV 6A4F MET B 0 UNP Q47VZ4 EXPRESSION TAG SEQRES 1 A 183 HIS MET MET ALA GLY ASN ASP SER ASN LEU ILE TRP LEU SEQRES 2 A 183 ASP LEU GLU MET THR GLY LEU GLU PRO VAL GLU ASP VAL SEQRES 3 A 183 ILE LEU GLU ILE ALA ILE ILE ILE THR ASP SER GLU LEU SEQRES 4 A 183 ASN ILE LEU ALA GLN GLY PRO ILE PHE ALA ILE SER GLN SEQRES 5 A 183 THR ASP ASP VAL LEU ASP ASN MET ASN PRO TRP CYS ILE SEQRES 6 A 183 GLU HIS HIS GLY LYS SER GLY LEU THR GLN ARG CYS ARG SEQRES 7 A 183 ASP SER GLU VAL SER LEU ALA HIS ALA THR LYS GLU SER SEQRES 8 A 183 LEU ALA PHE VAL GLN GLU TRP VAL PRO GLN GLY LYS SER SEQRES 9 A 183 PRO MET CYS GLY ASN SER ILE GLY GLN ASP ARG ARG PHE SEQRES 10 A 183 ILE ASN LYS TYR MET PRO ASP PHE GLU ASP HIS PHE HIS SEQRES 11 A 183 TYR ARG ASN LEU ASP VAL SER THR ILE LYS GLU LEU ALA SEQRES 12 A 183 LYS ARG TRP LYS PRO GLU VAL LEU GLU SER VAL VAL LYS SEQRES 13 A 183 THR GLY ALA HIS LEU ALA LEU ASP ASP ILE LYS GLU SER SEQRES 14 A 183 ILE ALA GLU LEU LYS VAL TYR ARG GLU LEU PHE PHE LYS SEQRES 15 A 183 LEU SEQRES 1 B 183 HIS MET MET ALA GLY ASN ASP SER ASN LEU ILE TRP LEU SEQRES 2 B 183 ASP LEU GLU MET THR GLY LEU GLU PRO VAL GLU ASP VAL SEQRES 3 B 183 ILE LEU GLU ILE ALA ILE ILE ILE THR ASP SER GLU LEU SEQRES 4 B 183 ASN ILE LEU ALA GLN GLY PRO ILE PHE ALA ILE SER GLN SEQRES 5 B 183 THR ASP ASP VAL LEU ASP ASN MET ASN PRO TRP CYS ILE SEQRES 6 B 183 GLU HIS HIS GLY LYS SER GLY LEU THR GLN ARG CYS ARG SEQRES 7 B 183 ASP SER GLU VAL SER LEU ALA HIS ALA THR LYS GLU SER SEQRES 8 B 183 LEU ALA PHE VAL GLN GLU TRP VAL PRO GLN GLY LYS SER SEQRES 9 B 183 PRO MET CYS GLY ASN SER ILE GLY GLN ASP ARG ARG PHE SEQRES 10 B 183 ILE ASN LYS TYR MET PRO ASP PHE GLU ASP HIS PHE HIS SEQRES 11 B 183 TYR ARG ASN LEU ASP VAL SER THR ILE LYS GLU LEU ALA SEQRES 12 B 183 LYS ARG TRP LYS PRO GLU VAL LEU GLU SER VAL VAL LYS SEQRES 13 B 183 THR GLY ALA HIS LEU ALA LEU ASP ASP ILE LYS GLU SER SEQRES 14 B 183 ILE ALA GLU LEU LYS VAL TYR ARG GLU LEU PHE PHE LYS SEQRES 15 B 183 LEU HET U5P A 201 21 HET U5P A 202 21 HET MN A 203 1 HET U5P B 201 21 HET U5P B 202 21 HET MN B 203 1 HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 U5P 4(C9 H13 N2 O9 P) FORMUL 5 MN 2(MN 2+) FORMUL 9 HOH *181(H2 O) HELIX 1 AA1 THR A 51 ASN A 57 1 7 HELIX 2 AA2 ASN A 59 SER A 69 1 11 HELIX 3 AA3 GLY A 70 SER A 78 1 9 HELIX 4 AA4 SER A 81 VAL A 97 1 17 HELIX 5 AA5 SER A 108 MET A 120 1 13 HELIX 6 AA6 MET A 120 ASP A 125 1 6 HELIX 7 AA7 VAL A 134 LYS A 145 1 12 HELIX 8 AA8 PRO A 146 VAL A 152 5 7 HELIX 9 AA9 LEU A 159 PHE A 178 1 20 HELIX 10 AB1 THR B 51 ASN B 57 1 7 HELIX 11 AB2 ASN B 59 LYS B 68 1 10 HELIX 12 AB3 LEU B 71 SER B 78 1 8 HELIX 13 AB4 SER B 81 VAL B 97 1 17 HELIX 14 AB5 SER B 108 MET B 120 1 13 HELIX 15 AB6 MET B 120 ASP B 125 1 6 HELIX 16 AB7 VAL B 134 LYS B 145 1 12 HELIX 17 AB8 PRO B 146 VAL B 152 5 7 HELIX 18 AB9 LEU B 159 PHE B 178 1 20 SHEET 1 AA1 3 ILE A 39 GLN A 42 0 SHEET 2 AA1 3 ILE A 25 THR A 33 -1 N ILE A 32 O LEU A 40 SHEET 3 AA1 3 PHE A 46 ALA A 47 -1 O PHE A 46 N ILE A 28 SHEET 1 AA2 5 ILE A 39 GLN A 42 0 SHEET 2 AA2 5 ILE A 25 THR A 33 -1 N ILE A 32 O LEU A 40 SHEET 3 AA2 5 LEU A 8 MET A 15 -1 N TRP A 10 O ILE A 31 SHEET 4 AA2 5 MET A 104 GLY A 106 1 O CYS A 105 N LEU A 11 SHEET 5 AA2 5 ASN A 131 ASP A 133 1 O LEU A 132 N MET A 104 SHEET 1 AA3 3 ILE B 39 GLN B 42 0 SHEET 2 AA3 3 ILE B 25 THR B 33 -1 N ILE B 32 O ALA B 41 SHEET 3 AA3 3 PHE B 46 ALA B 47 -1 O PHE B 46 N ILE B 28 SHEET 1 AA4 5 ILE B 39 GLN B 42 0 SHEET 2 AA4 5 ILE B 25 THR B 33 -1 N ILE B 32 O ALA B 41 SHEET 3 AA4 5 LEU B 8 MET B 15 -1 N TRP B 10 O ILE B 31 SHEET 4 AA4 5 MET B 104 GLY B 106 1 O CYS B 105 N LEU B 11 SHEET 5 AA4 5 ASN B 131 ASP B 133 1 O LEU B 132 N MET B 104 LINK OD1 ASP A 12 MN MN A 203 1555 1555 2.22 LINK O2P U5P A 201 MN MN A 203 1555 1555 2.16 LINK O3' U5P A 202 MN MN A 203 1555 1555 2.52 LINK OD1 ASP B 12 MN MN B 203 1555 1555 2.12 LINK O3P U5P B 201 MN MN B 203 1555 1555 2.29 LINK MN MN B 203 O HOH B 301 1555 1555 2.33 LINK MN MN B 203 O HOH B 302 1555 1555 2.61 LINK MN MN B 203 O HOH B 355 1555 1555 2.38 SITE 1 AC1 13 ASP A 12 GLU A 14 MET A 15 GLY A 17 SITE 2 AC1 13 LEU A 18 ASN A 59 TRP A 61 CYS A 62 SITE 3 AC1 13 HIS A 66 HIS A 158 ASP A 163 U5P A 202 SITE 4 AC1 13 MN A 203 SITE 1 AC2 11 ASN A 107 SER A 108 GLN A 111 SER A 135 SITE 2 AC2 11 U5P A 201 MN A 203 HOH A 313 HOH A 322 SITE 3 AC2 11 HOH A 341 TYR B 129 ARG B 130 SITE 1 AC3 3 ASP A 12 U5P A 201 U5P A 202 SITE 1 AC4 14 ASP B 12 LEU B 13 GLU B 14 MET B 15 SITE 2 AC4 14 GLY B 17 LEU B 18 ASN B 59 TRP B 61 SITE 3 AC4 14 CYS B 62 HIS B 66 HIS B 158 ASP B 163 SITE 4 AC4 14 U5P B 202 MN B 203 SITE 1 AC5 11 TYR A 129 ARG A 130 LEU B 18 ASN B 107 SITE 2 AC5 11 SER B 108 SER B 135 U5P B 201 MN B 203 SITE 3 AC5 11 HOH B 302 HOH B 320 HOH B 325 SITE 1 AC6 6 ASP B 12 U5P B 201 U5P B 202 HOH B 301 SITE 2 AC6 6 HOH B 302 HOH B 355 CRYST1 59.285 59.285 234.160 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016868 0.009739 0.000000 0.00000 SCALE2 0.000000 0.019477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004271 0.00000