HEADER FLAVOPROTEIN 19-JUN-18 6A4G TITLE MANDELATE OXIDASE MUTANT-Y128F WITH THE MONOOXIDE FMN ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYMANDELATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.46; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_COMMON: NOCARDIA ORIENTALIS; SOURCE 4 ORGANISM_TAXID: 31958; SOURCE 5 GENE: HMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FMN-DEPENDENT OXIDASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,K.H.LIN REVDAT 3 22-NOV-23 6A4G 1 REMARK REVDAT 2 15-JUL-20 6A4G 1 JRNL REVDAT 1 19-JUN-19 6A4G 0 JRNL AUTH K.H.LIN,S.Y.LYU,H.W.YEH,Y.S.LI,N.S.HSU,C.M.HUANG,Y.L.WANG, JRNL AUTH 2 H.W.SHIH,Z.C.WANG,C.J.WU,T.L.LI JRNL TITL STRUCTURAL AND CHEMICAL TRAPPING OF FLAVIN-OXIDE JRNL TITL 2 INTERMEDIATES REVEALS SUBSTRATE-DIRECTED REACTION JRNL TITL 3 MULTIPLICITY. JRNL REF PROTEIN SCI. V. 29 1655 2020 JRNL REFN ESSN 1469-896X JRNL PMID 32362037 JRNL DOI 10.1002/PRO.3879 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 30590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1539 - 4.5319 0.92 2832 148 0.2033 0.2206 REMARK 3 2 4.5319 - 3.5992 0.94 2775 153 0.1954 0.2134 REMARK 3 3 3.5992 - 3.1449 0.95 2768 144 0.2127 0.2210 REMARK 3 4 3.1449 - 2.8576 0.96 2739 174 0.2296 0.2638 REMARK 3 5 2.8576 - 2.6529 0.96 2766 150 0.2343 0.2639 REMARK 3 6 2.6529 - 2.4966 0.96 2766 145 0.2481 0.2715 REMARK 3 7 2.4966 - 2.3716 0.95 2700 160 0.2482 0.2521 REMARK 3 8 2.3716 - 2.2684 0.93 2692 127 0.2432 0.2882 REMARK 3 9 2.2684 - 2.1811 0.90 2586 111 0.2659 0.2717 REMARK 3 10 2.1811 - 2.1059 0.82 2346 100 0.2562 0.2672 REMARK 3 11 2.1059 - 2.0401 0.74 2095 113 0.2859 0.3320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2392 REMARK 3 ANGLE : 0.703 3252 REMARK 3 CHIRALITY : 0.046 380 REMARK 3 PLANARITY : 0.005 422 REMARK 3 DIHEDRAL : 7.897 1959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.11.1_2575) REMARK 200 STARTING MODEL: 3SGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TASCIMATE, 0.1M BIS-TRIS PROPANE REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.48300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.58550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 69.48300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 53.58550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.48300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 53.58550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 69.48300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.58550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.48300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.58550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.48300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 53.58550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 69.48300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 53.58550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.48300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.48300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.58550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 17 REMARK 465 ARG A 163 REMARK 465 LEU A 164 REMARK 465 ARG A 165 REMARK 465 ASP A 166 REMARK 465 MET A 167 REMARK 465 ARG A 168 REMARK 465 ASN A 169 REMARK 465 GLY A 170 REMARK 465 PHE A 171 REMARK 465 GLU A 175 REMARK 465 TRP A 176 REMARK 465 ASP A 183 REMARK 465 ALA A 184 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 HIS A 189 REMARK 465 ARG A 190 REMARK 465 ARG A 191 REMARK 465 THR A 192 REMARK 465 GLN A 193 REMARK 465 GLY A 194 REMARK 465 VAL A 195 REMARK 465 SER A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 ASP A 200 REMARK 465 HIS A 201 REMARK 465 THR A 202 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 465 GLU A 205 REMARK 465 VAL A 356 REMARK 465 VAL A 357 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 508 O HOH A 609 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 510 O HOH A 578 8555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 51.49 -95.31 REMARK 500 LEU A 173 118.94 81.31 REMARK 500 GLN A 256 -105.16 -100.16 REMARK 500 ALA A 316 13.86 87.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9Q6 A 402 DBREF 6A4G A 1 357 UNP O52792 HMO_AMYOR 1 357 SEQADV 6A4G MET A -19 UNP O52792 EXPRESSION TAG SEQADV 6A4G GLY A -18 UNP O52792 EXPRESSION TAG SEQADV 6A4G SER A -17 UNP O52792 EXPRESSION TAG SEQADV 6A4G SER A -16 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A -15 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A -14 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A -13 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A -12 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A -11 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A -10 UNP O52792 EXPRESSION TAG SEQADV 6A4G SER A -9 UNP O52792 EXPRESSION TAG SEQADV 6A4G SER A -8 UNP O52792 EXPRESSION TAG SEQADV 6A4G GLY A -7 UNP O52792 EXPRESSION TAG SEQADV 6A4G LEU A -6 UNP O52792 EXPRESSION TAG SEQADV 6A4G VAL A -5 UNP O52792 EXPRESSION TAG SEQADV 6A4G PRO A -4 UNP O52792 EXPRESSION TAG SEQADV 6A4G ARG A -3 UNP O52792 EXPRESSION TAG SEQADV 6A4G GLY A -2 UNP O52792 EXPRESSION TAG SEQADV 6A4G SER A -1 UNP O52792 EXPRESSION TAG SEQADV 6A4G HIS A 0 UNP O52792 EXPRESSION TAG SEQADV 6A4G PHE A 128 UNP O52792 TYR 128 ENGINEERED MUTATION SEQRES 1 A 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 377 LEU VAL PRO ARG GLY SER HIS MET THR TYR VAL SER LEU SEQRES 3 A 377 ALA ASP LEU GLU ARG ALA ALA ARG ASP VAL LEU PRO GLY SEQRES 4 A 377 GLU ILE PHE ASP PHE LEU ALA GLY GLY SER GLY THR GLU SEQRES 5 A 377 ALA SER LEU VAL ALA ASN ARG THR ALA LEU GLU ARG VAL SEQRES 6 A 377 PHE VAL ILE PRO ARG MET LEU ARG ASP LEU THR ASP VAL SEQRES 7 A 377 THR THR GLU ILE ASP ILE PHE GLY ARG ARG ALA ALA LEU SEQRES 8 A 377 PRO MET ALA VAL ALA PRO VAL ALA TYR GLN ARG LEU PHE SEQRES 9 A 377 HIS PRO GLU GLY GLU LEU ALA VAL ALA ARG ALA ALA ARG SEQRES 10 A 377 ASP ALA GLY VAL PRO TYR THR ILE CYS THR LEU SER SER SEQRES 11 A 377 VAL SER LEU GLU GLU ILE ALA ALA VAL GLY GLY ARG PRO SEQRES 12 A 377 TRP PHE GLN LEU PHE TRP LEU ARG ASP GLU LYS ARG SER SEQRES 13 A 377 LEU ASP LEU VAL ARG ARG ALA GLU ASP ALA GLY CYS GLU SEQRES 14 A 377 ALA ILE VAL PHE THR VAL ASP VAL PRO TRP MET GLY ARG SEQRES 15 A 377 ARG LEU ARG ASP MET ARG ASN GLY PHE ALA LEU PRO GLU SEQRES 16 A 377 TRP VAL THR ALA ALA ASN PHE ASP ALA GLY THR ALA ALA SEQRES 17 A 377 HIS ARG ARG THR GLN GLY VAL SER ALA VAL ALA ASP HIS SEQRES 18 A 377 THR ALA ARG GLU PHE ALA PRO ALA THR TRP GLU SER VAL SEQRES 19 A 377 GLU ALA VAL ARG ALA HIS THR ASP LEU PRO VAL VAL LEU SEQRES 20 A 377 LYS GLY ILE LEU ALA VAL GLU ASP ALA ARG ARG ALA VAL SEQRES 21 A 377 ASP ALA GLY ALA GLY GLY ILE VAL VAL SER ASN HIS GLY SEQRES 22 A 377 GLY ARG GLN LEU ASP GLY ALA VAL PRO GLY ILE GLU MET SEQRES 23 A 377 LEU GLY GLU ILE VAL ALA ALA VAL SER GLY GLY CYS GLU SEQRES 24 A 377 VAL LEU VAL ASP GLY GLY ILE ARG SER GLY GLY ASP VAL SEQRES 25 A 377 LEU LYS ALA THR ALA LEU GLY ALA SER ALA VAL LEU VAL SEQRES 26 A 377 GLY ARG PRO VAL MET TRP ALA LEU ALA ALA ALA GLY GLN SEQRES 27 A 377 ASP GLY VAL ARG GLN LEU LEU GLU LEU LEU ALA GLU GLU SEQRES 28 A 377 VAL ARG ASP ALA MET GLY LEU ALA GLY CYS GLU SER VAL SEQRES 29 A 377 GLY ALA ALA ARG ARG LEU ASN THR LYS LEU GLY VAL VAL HET 9Q6 A 402 32 HETNAM 9Q6 1-DEOXY-1-[(4AS)-4A-HYDROXY-7,8-DIMETHYL-2,4-DIOXO-3,4, HETNAM 2 9Q6 4A,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O- HETNAM 3 9Q6 PHOSPHONO-D-RIBITOL FORMUL 2 9Q6 C17 H23 N4 O10 P FORMUL 3 HOH *126(H2 O) HELIX 1 AA1 ALA A 7 VAL A 16 1 10 HELIX 2 AA2 GLY A 19 GLY A 27 1 9 HELIX 3 AA3 GLU A 32 ARG A 44 1 13 HELIX 4 AA4 TYR A 80 PHE A 84 5 5 HELIX 5 AA5 GLY A 88 GLY A 100 1 13 HELIX 6 AA6 SER A 112 VAL A 119 1 8 HELIX 7 AA7 ASP A 132 ALA A 146 1 15 HELIX 8 AA8 THR A 210 THR A 221 1 12 HELIX 9 AA9 ALA A 232 ALA A 242 1 11 HELIX 10 AB1 ASN A 251 ARG A 255 5 5 HELIX 11 AB2 PRO A 262 SER A 275 1 14 HELIX 12 AB3 SER A 288 LEU A 298 1 11 HELIX 13 AB4 GLY A 306 ALA A 315 1 10 HELIX 14 AB5 ALA A 316 ALA A 339 1 24 HELIX 15 AB6 SER A 343 ARG A 349 1 7 SHEET 1 AA1 2 VAL A 45 VAL A 47 0 SHEET 2 AA1 2 THR A 352 LEU A 354 -1 O LYS A 353 N PHE A 46 SHEET 1 AA2 2 ILE A 62 ILE A 64 0 SHEET 2 AA2 2 ARG A 67 ALA A 69 -1 O ALA A 69 N ILE A 62 SHEET 1 AA3 9 MET A 73 VAL A 75 0 SHEET 2 AA3 9 TYR A 103 ILE A 105 1 O THR A 104 N VAL A 75 SHEET 3 AA3 9 PRO A 123 LEU A 127 1 O TRP A 124 N ILE A 105 SHEET 4 AA3 9 ILE A 151 THR A 154 1 O VAL A 152 N PHE A 125 SHEET 5 AA3 9 VAL A 225 ILE A 230 1 O VAL A 226 N ILE A 151 SHEET 6 AA3 9 GLY A 246 VAL A 249 1 O VAL A 248 N LEU A 227 SHEET 7 AA3 9 GLU A 279 VAL A 282 1 O LEU A 281 N VAL A 249 SHEET 8 AA3 9 ALA A 302 VAL A 305 1 O LEU A 304 N VAL A 282 SHEET 9 AA3 9 MET A 73 VAL A 75 1 N ALA A 74 O VAL A 303 CISPEP 1 LEU A 173 PRO A 174 0 -3.46 SITE 1 AC1 16 LEU A 25 PRO A 77 CYS A 106 PHE A 128 SITE 2 AC1 16 THR A 154 LYS A 228 SER A 250 HIS A 252 SITE 3 AC1 16 ARG A 255 ASP A 283 GLY A 284 GLY A 285 SITE 4 AC1 16 ARG A 287 GLY A 306 ARG A 307 HOH A 562 CRYST1 138.966 138.966 107.171 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007196 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009331 0.00000