HEADER GENE REGULATION 24-JUN-18 6A5M TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA SUVH6 IN COMPLEX WITH SAM, TITLE 2 FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC COMPND 3 SUVH6; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: HISTONE H3-K9 METHYLTRANSFERASE 6,H3-K9-HMTASE 6,PROTEIN SET COMPND 6 DOMAIN GROUP 23,SUPPRESSOR OF VARIEGATION 3-9 HOMOLOG PROTEIN 6, COMPND 7 SU(VAR)3-9 HOMOLOG PROTEIN 6; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SUVH6, SDG23, SET23, AT2G22740, T9I22.18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS SRA, SET, HISTONE METHYLTRANSFERASE, DNA METHYLATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,J.DU REVDAT 4 22-NOV-23 6A5M 1 LINK REVDAT 3 26-SEP-18 6A5M 1 JRNL REVDAT 2 19-SEP-18 6A5M 1 JRNL REVDAT 1 29-AUG-18 6A5M 0 JRNL AUTH X.LI,C.J.HARRIS,Z.ZHONG,W.CHEN,R.LIU,B.JIA,Z.WANG,S.LI, JRNL AUTH 2 S.E.JACOBSEN,J.DU JRNL TITL MECHANISTIC INSIGHTS INTO PLANT SUVH FAMILY H3K9 JRNL TITL 2 METHYLTRANSFERASES AND THEIR BINDING TO CONTEXT-BIASED JRNL TITL 3 NON-CG DNA METHYLATION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E8793 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30150382 JRNL DOI 10.1073/PNAS.1809841115 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 23963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5544 - 4.7832 0.99 2581 142 0.1643 0.1796 REMARK 3 2 4.7832 - 3.7977 0.99 2580 143 0.1434 0.1726 REMARK 3 3 3.7977 - 3.3179 0.99 2533 138 0.1690 0.2052 REMARK 3 4 3.3179 - 3.0147 0.99 2528 134 0.1946 0.2924 REMARK 3 5 3.0147 - 2.7987 0.99 2539 133 0.2032 0.2704 REMARK 3 6 2.7987 - 2.6337 0.99 2519 136 0.2027 0.2551 REMARK 3 7 2.6337 - 2.5018 0.99 2508 144 0.2101 0.2889 REMARK 3 8 2.5018 - 2.3929 0.98 2508 134 0.2203 0.2703 REMARK 3 9 2.3929 - 2.3008 0.96 2444 119 0.2053 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3960 REMARK 3 ANGLE : 1.123 5338 REMARK 3 CHIRALITY : 0.042 569 REMARK 3 PLANARITY : 0.005 694 REMARK 3 DIHEDRAL : 16.393 1510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2022 8.6814 -11.6385 REMARK 3 T TENSOR REMARK 3 T11: 0.2235 T22: 0.3444 REMARK 3 T33: 0.2686 T12: -0.0156 REMARK 3 T13: 0.0331 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.3717 L22: 3.6173 REMARK 3 L33: 0.8705 L12: -1.6267 REMARK 3 L13: 0.0104 L23: -0.5028 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.1198 S13: -0.1972 REMARK 3 S21: 0.0483 S22: -0.0317 S23: 0.3681 REMARK 3 S31: -0.0337 S32: -0.1344 S33: 0.0861 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 368 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4673 28.2295 -20.7725 REMARK 3 T TENSOR REMARK 3 T11: 0.3164 T22: 0.2849 REMARK 3 T33: 0.2515 T12: 0.0120 REMARK 3 T13: 0.0495 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 4.4115 L22: 2.8801 REMARK 3 L33: 2.1445 L12: -1.3364 REMARK 3 L13: 0.8287 L23: -0.8449 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: 0.3021 S13: 0.0714 REMARK 3 S21: -0.1007 S22: -0.0595 S23: -0.0977 REMARK 3 S31: -0.2007 S32: -0.0027 S33: -0.0666 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 469 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4754 13.8489 -19.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.3180 T22: 0.3349 REMARK 3 T33: 0.2566 T12: -0.0071 REMARK 3 T13: 0.0537 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.5474 L22: 1.4457 REMARK 3 L33: 0.4754 L12: -0.6929 REMARK 3 L13: 0.1337 L23: -0.1131 REMARK 3 S TENSOR REMARK 3 S11: 0.1453 S12: 0.2364 S13: 0.2120 REMARK 3 S21: -0.1944 S22: -0.2160 S23: -0.4127 REMARK 3 S31: 0.0324 S32: 0.1633 S33: 0.0861 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 551 THROUGH 572 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7238 -20.4801 -22.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.6248 T22: 0.5220 REMARK 3 T33: 0.6575 T12: -0.0214 REMARK 3 T13: -0.1269 T23: -0.1166 REMARK 3 L TENSOR REMARK 3 L11: 3.2681 L22: 1.3150 REMARK 3 L33: 3.2682 L12: 1.9341 REMARK 3 L13: 1.1732 L23: 0.1204 REMARK 3 S TENSOR REMARK 3 S11: 0.4444 S12: 0.6430 S13: -0.8928 REMARK 3 S21: -0.7558 S22: 0.2059 S23: 0.5073 REMARK 3 S31: 0.4521 S32: -0.7780 S33: 0.0419 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 573 THROUGH 647 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6677 -2.1279 -16.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.2609 REMARK 3 T33: 0.2013 T12: 0.0276 REMARK 3 T13: 0.0124 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.7229 L22: 2.5451 REMARK 3 L33: 0.9657 L12: 0.7425 REMARK 3 L13: 0.2825 L23: 0.4117 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.2350 S13: -0.0611 REMARK 3 S21: -0.1926 S22: -0.0852 S23: -0.0307 REMARK 3 S31: 0.0080 S32: 0.0178 S33: -0.0136 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 648 THROUGH 705 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8565 -5.4586 -1.2992 REMARK 3 T TENSOR REMARK 3 T11: 0.4556 T22: 0.3593 REMARK 3 T33: 0.2926 T12: -0.0146 REMARK 3 T13: -0.0251 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.4813 L22: 4.1435 REMARK 3 L33: 2.6141 L12: -0.4620 REMARK 3 L13: -0.9034 L23: -0.3364 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -1.2666 S13: -0.1928 REMARK 3 S21: 0.3251 S22: -0.0551 S23: -0.5235 REMARK 3 S31: 0.1036 S32: 0.3290 S33: 0.0175 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 706 THROUGH 790 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8204 2.6177 -2.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.2884 T22: 0.2750 REMARK 3 T33: 0.2679 T12: -0.0247 REMARK 3 T13: -0.0090 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.9159 L22: 2.7840 REMARK 3 L33: 1.6031 L12: -0.8757 REMARK 3 L13: 0.1412 L23: 1.1865 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0639 S13: 0.0982 REMARK 3 S21: 0.3690 S22: 0.0389 S23: -0.3095 REMARK 3 S31: 0.1851 S32: 0.0854 S33: -0.0778 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9777 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6A5K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M DI-SODIUM TARTRATE, 20% PEG 3350, REMARK 280 PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.54900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLY A 266 REMARK 465 GLY A 396 REMARK 465 GLY A 397 REMARK 465 ASN A 398 REMARK 465 VAL A 399 REMARK 465 MSE A 400 REMARK 465 GLN A 401 REMARK 465 VAL A 402 REMARK 465 LYS A 403 REMARK 465 LYS A 404 REMARK 465 LYS A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 GLU A 408 REMARK 465 LEU A 409 REMARK 465 LYS A 410 REMARK 465 GLU A 411 REMARK 465 PRO A 412 REMARK 465 LYS A 442 REMARK 465 SER A 443 REMARK 465 THR A 444 REMARK 465 HIS A 445 REMARK 465 ASP A 446 REMARK 465 LYS A 447 REMARK 465 LEU A 685 REMARK 465 GLY A 686 REMARK 465 THR A 687 REMARK 465 GLN A 688 REMARK 465 ALA A 689 REMARK 465 GLY A 690 REMARK 465 ARG A 691 REMARK 465 SER A 692 REMARK 465 MSE A 693 REMARK 465 ALA A 694 REMARK 465 GLU A 695 REMARK 465 GLY A 696 REMARK 465 ASP A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 368 -162.73 -117.99 REMARK 500 THR A 419 -118.61 36.74 REMARK 500 LYS A 449 -28.83 -158.09 REMARK 500 ASP A 509 100.83 -160.16 REMARK 500 ASP A 526 -155.03 -137.40 REMARK 500 VAL A 609 -70.45 -131.33 REMARK 500 ILE A 642 -71.61 -96.89 REMARK 500 ASN A 711 -166.24 -120.72 REMARK 500 TYR A 731 -44.84 -156.58 REMARK 500 VAL A 784 79.34 -115.32 REMARK 500 ARG A 787 -26.94 71.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 553 SG REMARK 620 2 CYS A 569 SG 106.3 REMARK 620 3 CYS A 595 SG 112.7 108.2 REMARK 620 4 CYS A 599 SG 115.2 101.7 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 553 SG REMARK 620 2 CYS A 555 SG 104.7 REMARK 620 3 CYS A 559 SG 120.6 108.5 REMARK 620 4 CYS A 567 SG 103.0 108.6 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 559 SG REMARK 620 2 CYS A 595 SG 106.3 REMARK 620 3 CYS A 601 SG 80.7 117.2 REMARK 620 4 CYS A 605 SG 98.0 114.9 126.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 720 SG REMARK 620 2 CYS A 778 SG 111.2 REMARK 620 3 CYS A 780 SG 109.9 106.5 REMARK 620 4 CYS A 785 SG 110.6 109.4 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 805 DBREF 6A5M A 264 790 UNP Q8VZ17 SUVH6_ARATH 264 790 SEQADV 6A5M LEU A 777 UNP Q8VZ17 PRO 777 ENGINEERED MUTATION SEQRES 1 A 527 SER SER GLY ASP SER SER ARG ASN LYS VAL LYS GLU THR SEQRES 2 A 527 LEU ARG LEU PHE HIS GLY VAL CYS ARG LYS ILE LEU GLN SEQRES 3 A 527 GLU ASP GLU ALA LYS PRO GLU ASP GLN ARG ARG LYS GLY SEQRES 4 A 527 LYS GLY LEU ARG ILE ASP PHE GLU ALA SER THR ILE LEU SEQRES 5 A 527 LYS ARG ASN GLY LYS PHE LEU ASN SER GLY VAL HIS ILE SEQRES 6 A 527 LEU GLY GLU VAL PRO GLY VAL GLU VAL GLY ASP GLU PHE SEQRES 7 A 527 GLN TYR ARG MSE GLU LEU ASN ILE LEU GLY ILE HIS LYS SEQRES 8 A 527 PRO SER GLN ALA GLY ILE ASP TYR MSE LYS TYR GLY LYS SEQRES 9 A 527 ALA LYS VAL ALA THR SER ILE VAL ALA SER GLY GLY TYR SEQRES 10 A 527 ASP ASP HIS LEU ASP ASN SER ASP VAL LEU THR TYR THR SEQRES 11 A 527 GLY GLN GLY GLY ASN VAL MSE GLN VAL LYS LYS LYS GLY SEQRES 12 A 527 GLU GLU LEU LYS GLU PRO GLU ASP GLN LYS LEU ILE THR SEQRES 13 A 527 GLY ASN LEU ALA LEU ALA THR SER ILE GLU LYS GLN THR SEQRES 14 A 527 PRO VAL ARG VAL ILE ARG GLY LYS HIS LYS SER THR HIS SEQRES 15 A 527 ASP LYS SER LYS GLY GLY ASN TYR VAL TYR ASP GLY LEU SEQRES 16 A 527 TYR LEU VAL GLU LYS TYR TRP GLN GLN VAL GLY SER HIS SEQRES 17 A 527 GLY MSE ASN VAL PHE LYS PHE GLN LEU ARG ARG ILE PRO SEQRES 18 A 527 GLY GLN PRO GLU LEU SER TRP VAL GLU VAL LYS LYS SER SEQRES 19 A 527 LYS SER LYS TYR ARG GLU GLY LEU CYS LYS LEU ASP ILE SEQRES 20 A 527 SER GLU GLY LYS GLU GLN SER PRO ILE SER ALA VAL ASN SEQRES 21 A 527 GLU ILE ASP ASP GLU LYS PRO PRO LEU PHE THR TYR THR SEQRES 22 A 527 VAL LYS LEU ILE TYR PRO ASP TRP CYS ARG PRO VAL PRO SEQRES 23 A 527 PRO LYS SER CYS CYS CYS THR THR ARG CYS THR GLU ALA SEQRES 24 A 527 GLU ALA ARG VAL CYS ALA CYS VAL GLU LYS ASN GLY GLY SEQRES 25 A 527 GLU ILE PRO TYR ASN PHE ASP GLY ALA ILE VAL GLY ALA SEQRES 26 A 527 LYS PRO THR ILE TYR GLU CYS GLY PRO LEU CYS LYS CYS SEQRES 27 A 527 PRO SER SER CYS TYR LEU ARG VAL THR GLN HIS GLY ILE SEQRES 28 A 527 LYS LEU PRO LEU GLU ILE PHE LYS THR LYS SER ARG GLY SEQRES 29 A 527 TRP GLY VAL ARG CYS LEU LYS SER ILE PRO ILE GLY SER SEQRES 30 A 527 PHE ILE CYS GLU TYR VAL GLY GLU LEU LEU GLU ASP SER SEQRES 31 A 527 GLU ALA GLU ARG ARG ILE GLY ASN ASP GLU TYR LEU PHE SEQRES 32 A 527 ASP ILE GLY ASN ARG TYR ASP ASN SER LEU ALA GLN GLY SEQRES 33 A 527 MSE SER GLU LEU MSE LEU GLY THR GLN ALA GLY ARG SER SEQRES 34 A 527 MSE ALA GLU GLY ASP GLU SER SER GLY PHE THR ILE ASP SEQRES 35 A 527 ALA ALA SER LYS GLY ASN VAL GLY ARG PHE ILE ASN HIS SEQRES 36 A 527 SER CYS SER PRO ASN LEU TYR ALA GLN ASN VAL LEU TYR SEQRES 37 A 527 ASP HIS GLU ASP SER ARG ILE PRO HIS VAL MSE PHE PHE SEQRES 38 A 527 ALA GLN ASP ASN ILE PRO PRO LEU GLN GLU LEU CYS TYR SEQRES 39 A 527 ASP TYR ASN TYR ALA LEU ASP GLN VAL ARG ASP SER LYS SEQRES 40 A 527 GLY ASN ILE LYS GLN LYS LEU CYS PHE CYS GLY ALA ALA SEQRES 41 A 527 VAL CYS ARG ARG ARG LEU TYR MODRES 6A5M MSE A 345 MET MODIFIED RESIDUE MODRES 6A5M MSE A 363 MET MODIFIED RESIDUE MODRES 6A5M MSE A 473 MET MODIFIED RESIDUE MODRES 6A5M MSE A 680 MET MODIFIED RESIDUE MODRES 6A5M MSE A 684 MET MODIFIED RESIDUE MODRES 6A5M MSE A 742 MET MODIFIED RESIDUE HET MSE A 345 8 HET MSE A 363 8 HET MSE A 473 8 HET MSE A 680 8 HET MSE A 684 8 HET MSE A 742 8 HET ZN A 801 1 HET ZN A 802 1 HET ZN A 803 1 HET ZN A 804 1 HET SAM A 805 27 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 6 SAM C15 H22 N6 O5 S FORMUL 7 HOH *193(H2 O) HELIX 1 AA1 SER A 268 ALA A 293 1 26 HELIX 2 AA2 PRO A 295 ARG A 299 5 5 HELIX 3 AA3 ARG A 306 ASN A 318 1 13 HELIX 4 AA4 TYR A 343 LEU A 350 1 8 HELIX 5 AA5 HIS A 383 SER A 387 5 5 HELIX 6 AA6 ILE A 418 GLN A 431 1 14 HELIX 7 AA7 LEU A 489 LYS A 498 1 10 HELIX 8 AA8 PRO A 542 ARG A 546 5 5 HELIX 9 AA9 CYS A 567 ASN A 573 1 7 HELIX 10 AB1 VAL A 609 GLY A 613 5 5 HELIX 11 AB2 GLU A 651 ARG A 657 1 7 HELIX 12 AB3 ASN A 661 GLU A 663 5 3 HELIX 13 AB4 ASN A 674 MSE A 684 1 11 HELIX 14 AB5 ASN A 711 ILE A 716 5 6 SHEET 1 AA1 5 GLU A 340 PHE A 341 0 SHEET 2 AA1 5 TYR A 453 VAL A 468 -1 O TYR A 453 N PHE A 341 SHEET 3 AA1 5 VAL A 434 GLY A 439 -1 N ARG A 438 O VAL A 454 SHEET 4 AA1 5 ALA A 368 SER A 377 1 N ILE A 374 O ARG A 435 SHEET 5 AA1 5 ILE A 360 TYR A 365 -1 N ASP A 361 O SER A 373 SHEET 1 AA2 4 GLU A 340 PHE A 341 0 SHEET 2 AA2 4 TYR A 453 VAL A 468 -1 O TYR A 453 N PHE A 341 SHEET 3 AA2 4 ASN A 474 ARG A 482 -1 O VAL A 475 N GLN A 467 SHEET 4 AA2 4 VAL A 389 THR A 393 -1 N LEU A 390 O LEU A 480 SHEET 1 AA3 6 LEU A 505 LYS A 507 0 SHEET 2 AA3 6 SER A 520 VAL A 522 -1 O ALA A 521 N CYS A 506 SHEET 3 AA3 6 LEU A 618 LYS A 622 1 O ILE A 620 N SER A 520 SHEET 4 AA3 6 TRP A 628 CYS A 632 -1 O GLY A 629 N PHE A 621 SHEET 5 AA3 6 GLU A 754 TYR A 757 -1 O LEU A 755 N VAL A 630 SHEET 6 AA3 6 ASN A 717 HIS A 718 1 N ASN A 717 O TYR A 757 SHEET 1 AA4 2 THR A 534 TYR A 535 0 SHEET 2 AA4 2 LYS A 709 GLY A 710 1 O GLY A 710 N THR A 534 SHEET 1 AA5 4 ILE A 592 TYR A 593 0 SHEET 2 AA5 4 LEU A 724 LEU A 730 1 O LEU A 730 N ILE A 592 SHEET 3 AA5 4 HIS A 740 ALA A 745 -1 O HIS A 740 N VAL A 729 SHEET 4 AA5 4 PHE A 641 GLU A 644 -1 N ILE A 642 O PHE A 743 SHEET 1 AA6 3 GLU A 648 LEU A 650 0 SHEET 2 AA6 3 THR A 703 ASP A 705 -1 O ASP A 705 N GLU A 648 SHEET 3 AA6 3 LEU A 665 ASP A 667 -1 N PHE A 666 O ILE A 704 SHEET 1 AA7 2 LYS A 776 LEU A 777 0 SHEET 2 AA7 2 ARG A 788 TYR A 790 -1 O LEU A 789 N LYS A 776 LINK C ARG A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N GLU A 346 1555 1555 1.33 LINK C TYR A 362 N MSE A 363 1555 1555 1.33 LINK C MSE A 363 N LYS A 364 1555 1555 1.33 LINK C GLY A 472 N MSE A 473 1555 1555 1.33 LINK C MSE A 473 N ASN A 474 1555 1555 1.33 LINK C GLY A 679 N MSE A 680 1555 1555 1.32 LINK C MSE A 680 N SER A 681 1555 1555 1.33 LINK C LEU A 683 N MSE A 684 1555 1555 1.33 LINK C VAL A 741 N MSE A 742 1555 1555 1.33 LINK C MSE A 742 N PHE A 743 1555 1555 1.33 LINK SG CYS A 553 ZN ZN A 801 1555 1555 2.64 LINK SG CYS A 553 ZN ZN A 803 1555 1555 2.14 LINK SG CYS A 555 ZN ZN A 803 1555 1555 2.43 LINK SG CYS A 559 ZN ZN A 802 1555 1555 2.50 LINK SG CYS A 559 ZN ZN A 803 1555 1555 2.13 LINK SG CYS A 567 ZN ZN A 803 1555 1555 2.22 LINK SG CYS A 569 ZN ZN A 801 1555 1555 2.34 LINK SG CYS A 595 ZN ZN A 801 1555 1555 2.45 LINK SG CYS A 595 ZN ZN A 802 1555 1555 2.32 LINK SG CYS A 599 ZN ZN A 801 1555 1555 2.38 LINK SG CYS A 601 ZN ZN A 802 1555 1555 2.23 LINK SG CYS A 605 ZN ZN A 802 1555 1555 2.34 LINK SG CYS A 720 ZN ZN A 804 1555 1555 2.43 LINK SG CYS A 778 ZN ZN A 804 1555 1555 2.23 LINK SG CYS A 780 ZN ZN A 804 1555 1555 2.40 LINK SG CYS A 785 ZN ZN A 804 1555 1555 2.44 SITE 1 AC1 4 CYS A 553 CYS A 569 CYS A 595 CYS A 599 SITE 1 AC2 4 CYS A 559 CYS A 595 CYS A 601 CYS A 605 SITE 1 AC3 4 CYS A 553 CYS A 555 CYS A 559 CYS A 567 SITE 1 AC4 4 CYS A 720 CYS A 778 CYS A 780 CYS A 785 SITE 1 AC5 15 ARG A 626 GLY A 627 TRP A 628 GLU A 663 SITE 2 AC5 15 TYR A 664 ARG A 714 PHE A 715 ASN A 717 SITE 3 AC5 15 HIS A 718 TYR A 759 LYS A 776 LEU A 777 SITE 4 AC5 15 CYS A 778 PHE A 779 HOH A 962 CRYST1 57.546 77.098 66.820 90.00 110.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017377 0.000000 0.006541 0.00000 SCALE2 0.000000 0.012971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015991 0.00000