HEADER TRANSCRIPTION 25-JUN-18 6A60
TITLE CRYSTAL STRUCTURE OF HUMAN FXR/RXR-LBD HETERODIMER BOUND TO GW4064 AND
TITLE 2 9CRA AND SRC1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BILE ACID RECEPTOR;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN;
COMPND 5 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1,
COMPND 6 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR-
COMPND 7 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES;
COMPND 10 MOL_ID: 2;
COMPND 11 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1;
COMPND 12 CHAIN: B, F;
COMPND 13 FRAGMENT: LIGAND BINDING DOMAIN;
COMPND 14 ENGINEERED: YES;
COMPND 15 MOL_ID: 3;
COMPND 16 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA;
COMPND 17 CHAIN: D;
COMPND 18 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X
COMPND 19 RECEPTOR ALPHA;
COMPND 20 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3);
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 12 ORGANISM_COMMON: HUMAN;
SOURCE 13 ORGANISM_TAXID: 9606;
SOURCE 14 MOL_ID: 3;
SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 16 ORGANISM_COMMON: HUMAN;
SOURCE 17 ORGANISM_TAXID: 9606;
SOURCE 18 GENE: RXRA, NR2B1;
SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NUCLEAR RECEPTOR HETERODIMER, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR N.WANG,J.LIU
REVDAT 4 27-MAR-24 6A60 1 REMARK
REVDAT 3 05-DEC-18 6A60 1 JRNL
REVDAT 2 17-OCT-18 6A60 1 COMPND JRNL
REVDAT 1 10-OCT-18 6A60 0
JRNL AUTH N.WANG,Q.ZOU,J.XU,J.ZHANG,J.LIU
JRNL TITL LIGAND BINDING AND HETERODIMERIZATION WITH RETINOID X
JRNL TITL 2 RECEPTOR ALPHA (RXR ALPHA ) INDUCE FARNESOID X RECEPTOR
JRNL TITL 3 (FXR) CONFORMATIONAL CHANGES AFFECTING COACTIVATOR BINDING
JRNL REF J. BIOL. CHEM. V. 293 18180 2018
JRNL REFN ESSN 1083-351X
JRNL PMID 30275017
JRNL DOI 10.1074/JBC.RA118.004652
REMARK 2
REMARK 2 RESOLUTION. 3.05 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0189
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.95
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5
REMARK 3 NUMBER OF REFLECTIONS : 11002
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.228
REMARK 3 R VALUE (WORKING SET) : 0.225
REMARK 3 FREE R VALUE : 0.288
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500
REMARK 3 FREE R VALUE TEST SET COUNT : 521
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13
REMARK 3 REFLECTION IN BIN (WORKING SET) : 808
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06
REMARK 3 BIN R VALUE (WORKING SET) : 0.3400
REMARK 3 BIN FREE R VALUE SET COUNT : 37
REMARK 3 BIN FREE R VALUE : 0.4110
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3638
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 58
REMARK 3 SOLVENT ATOMS : 1
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.2
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.79000
REMARK 3 B22 (A**2) : -1.79000
REMARK 3 B33 (A**2) : 3.57000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.520
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.425
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.502
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3768 ; 0.012 ; 0.014
REMARK 3 BOND LENGTHS OTHERS (A): 3513 ; 0.001 ; 0.017
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5084 ; 1.732 ; 1.665
REMARK 3 BOND ANGLES OTHERS (DEGREES): 8220 ; 1.029 ; 1.636
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.806 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;39.253 ;22.010
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 701 ;20.601 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.290 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.102 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4122 ; 0.009 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 6A60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-18.
REMARK 100 THE DEPOSITION ID IS D_1300008204.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-NOV-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL19U1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11678
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050
REMARK 200 RESOLUTION RANGE LOW (A) : 102.850
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 13.80
REMARK 200 R MERGE (I) : 0.07100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7
REMARK 200 DATA REDUNDANCY IN SHELL : 14.40
REMARK 200 R MERGE FOR SHELL (I) : 1.01500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.27
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE, 12%
REMARK 280 PEG3350, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.72800
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.42450
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.42450
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.09200
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.42450
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.42450
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.36400
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.42450
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.42450
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.09200
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.42450
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.42450
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.36400
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.72800
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ILE A 273
REMARK 465 LEU A 274
REMARK 465 LYS A 275
REMARK 465 GLU A 276
REMARK 465 GLU A 277
REMARK 465 PRO A 341
REMARK 465 SER A 342
REMARK 465 GLY A 343
REMARK 465 HIS A 344
REMARK 465 GLN A 472
REMARK 465 GLU B 744
REMARK 465 ARG B 745
REMARK 465 HIS B 746
REMARK 465 GLU B 755
REMARK 465 GLY B 756
REMARK 465 SER B 757
REMARK 465 PRO B 758
REMARK 465 SER B 759
REMARK 465 SER D 225
REMARK 465 ALA D 226
REMARK 465 ASN D 227
REMARK 465 GLU D 243
REMARK 465 PRO D 244
REMARK 465 LYS D 245
REMARK 465 THR D 246
REMARK 465 GLU D 247
REMARK 465 THR D 248
REMARK 465 TYR D 249
REMARK 465 VAL D 250
REMARK 465 GLU D 251
REMARK 465 ALA D 252
REMARK 465 ASN D 253
REMARK 465 MET D 254
REMARK 465 GLY D 255
REMARK 465 LEU D 256
REMARK 465 ASN D 257
REMARK 465 PRO D 258
REMARK 465 SER D 259
REMARK 465 SER D 260
REMARK 465 PRO D 261
REMARK 465 ASN D 262
REMARK 465 PRO D 458
REMARK 465 HIS D 459
REMARK 465 GLN D 460
REMARK 465 MET D 461
REMARK 465 THR D 462
REMARK 465 GLU F 628
REMARK 465 GLY F 640
REMARK 465 SER F 641
REMARK 465 PRO F 642
REMARK 465 SER F 643
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 248 OG1 THR A 251 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 249 -151.26 56.35
REMARK 500 MET A 265 60.07 -155.09
REMARK 500 GLU A 268 50.53 -103.18
REMARK 500 THR A 270 79.01 54.15
REMARK 500 THR A 378 147.51 82.70
REMARK 500 LEU A 391 51.02 -90.37
REMARK 500 TYR A 397 80.86 63.85
REMARK 500 ASP A 400 60.94 -103.55
REMARK 500 VAL A 456 -159.38 -124.18
REMARK 500 ASN A 457 59.91 -114.63
REMARK 500 HIS A 459 -155.30 -139.69
REMARK 500 PRO A 463 -39.05 -34.36
REMARK 500 ASP A 470 162.73 70.72
REMARK 500 MET D 230 77.84 -108.32
REMARK 500 HIS D 288 -8.29 82.79
REMARK 500 ASP D 322 76.11 33.71
REMARK 500 ARG D 414 -35.80 -135.79
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 436 0.10 SIDE CHAIN
REMARK 500 ARG D 414 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 ARG F 635 10.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 601 DISTANCE = 6.32 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 064 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 9CR D 501
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6A5W RELATED DB: PDB
REMARK 900 RELATED ID: 6A5X RELATED DB: PDB
REMARK 900 RELATED ID: 6A5Y RELATED DB: PDB
REMARK 900 RELATED ID: 6A5Z RELATED DB: PDB
DBREF 6A60 A 244 472 UNP Q96RI1 NR1H4_HUMAN 258 486
DBREF 6A60 B 744 759 UNP B5MCN7 B5MCN7_HUMAN 534 549
DBREF 6A60 D 225 462 UNP P19793 RXRA_HUMAN 225 462
DBREF 6A60 F 628 643 UNP B5MCN7 B5MCN7_HUMAN 534 549
SEQADV 6A60 GLU A 432 UNP Q96RI1 CYS 446 ENGINEERED MUTATION
SEQADV 6A60 GLU A 466 UNP Q96RI1 CYS 480 ENGINEERED MUTATION
SEQRES 1 A 229 GLU LEU THR PRO ASP GLN GLN THR LEU LEU HIS PHE ILE
SEQRES 2 A 229 MET ASP SER TYR ASN LYS GLN ARG MET PRO GLN GLU ILE
SEQRES 3 A 229 THR ASN LYS ILE LEU LYS GLU GLU PHE SER ALA GLU GLU
SEQRES 4 A 229 ASN PHE LEU ILE LEU THR GLU MET ALA THR ASN HIS VAL
SEQRES 5 A 229 GLN VAL LEU VAL GLU PHE THR LYS LYS LEU PRO GLY PHE
SEQRES 6 A 229 GLN THR LEU ASP HIS GLU ASP GLN ILE ALA LEU LEU LYS
SEQRES 7 A 229 GLY SER ALA VAL GLU ALA MET PHE LEU ARG SER ALA GLU
SEQRES 8 A 229 ILE PHE ASN LYS LYS LEU PRO SER GLY HIS SER ASP LEU
SEQRES 9 A 229 LEU GLU GLU ARG ILE ARG ASN SER GLY ILE SER ASP GLU
SEQRES 10 A 229 TYR ILE THR PRO MET PHE SER PHE TYR LYS SER ILE GLY
SEQRES 11 A 229 GLU LEU LYS MET THR GLN GLU GLU TYR ALA LEU LEU THR
SEQRES 12 A 229 ALA ILE VAL ILE LEU SER PRO ASP ARG GLN TYR ILE LYS
SEQRES 13 A 229 ASP ARG GLU ALA VAL GLU LYS LEU GLN GLU PRO LEU LEU
SEQRES 14 A 229 ASP VAL LEU GLN LYS LEU CYS LYS ILE HIS GLN PRO GLU
SEQRES 15 A 229 ASN PRO GLN HIS PHE ALA GLU LEU LEU GLY ARG LEU THR
SEQRES 16 A 229 GLU LEU ARG THR PHE ASN HIS HIS HIS ALA GLU MET LEU
SEQRES 17 A 229 MET SER TRP ARG VAL ASN ASP HIS LYS PHE THR PRO LEU
SEQRES 18 A 229 LEU GLU GLU ILE TRP ASP VAL GLN
SEQRES 1 B 16 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY
SEQRES 2 B 16 SER PRO SER
SEQRES 1 D 238 SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE LEU GLU
SEQRES 2 D 238 ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR TYR VAL
SEQRES 3 D 238 GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO ASN ASP
SEQRES 4 D 238 PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU
SEQRES 5 D 238 PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE
SEQRES 6 D 238 SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG
SEQRES 7 D 238 ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SER HIS
SEQRES 8 D 238 ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU ALA THR
SEQRES 9 D 238 GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER ALA GLY
SEQRES 10 D 238 VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU LEU VAL
SEQRES 11 D 238 SER LYS MET ARG ASP MET GLN MET ASP LYS THR GLU LEU
SEQRES 12 D 238 GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SER
SEQRES 13 D 238 LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA LEU ARG
SEQRES 14 D 238 GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS LYS HIS
SEQRES 15 D 238 LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU
SEQRES 16 D 238 LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS CYS
SEQRES 17 D 238 LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP THR
SEQRES 18 D 238 PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU ALA PRO
SEQRES 19 D 238 HIS GLN MET THR
SEQRES 1 F 16 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY
SEQRES 2 F 16 SER PRO SER
HET 064 A 501 36
HET 9CR D 501 22
HETNAM 064 3-[(E)-2-(2-CHLORO-4-{[3-(2,6-DICHLOROPHENYL)-5-(1-
HETNAM 2 064 METHYLETHYL)ISOXAZOL-4-YL]METHOXY}PHENYL)
HETNAM 3 064 ETHENYL]BENZOIC ACID
HETNAM 9CR (9CIS)-RETINOIC ACID
FORMUL 5 064 C28 H22 CL3 N O4
FORMUL 6 9CR C20 H28 O2
FORMUL 7 HOH *(H2 O)
HELIX 1 AA1 GLN A 249 ASP A 258 1 10
HELIX 2 AA2 SER A 279 LYS A 304 1 26
HELIX 3 AA3 ASP A 312 ASN A 337 1 26
HELIX 4 AA4 LEU A 347 ASN A 354 1 8
HELIX 5 AA5 SER A 358 GLU A 360 5 3
HELIX 6 AA6 TYR A 361 GLY A 373 1 13
HELIX 7 AA7 MET A 377 LEU A 391 1 15
HELIX 8 AA8 ASP A 400 GLN A 423 1 24
HELIX 9 AA9 GLN A 428 SER A 453 1 26
HELIX 10 AB1 THR A 462 TRP A 469 1 8
HELIX 11 AB2 LEU B 749 LEU B 753 5 5
HELIX 12 AB3 PRO D 231 VAL D 242 1 12
HELIX 13 AB4 PRO D 264 ARG D 285 1 22
HELIX 14 AB5 PRO D 293 SER D 317 1 25
HELIX 15 AB6 ARG D 334 SER D 339 1 6
HELIX 16 AB7 VAL D 342 LEU D 353 1 12
HELIX 17 AB8 LEU D 353 MET D 360 1 8
HELIX 18 AB9 ASP D 363 PHE D 376 1 14
HELIX 19 AC1 ASN D 385 TYR D 408 1 24
HELIX 20 AC2 ARG D 414 LEU D 420 1 7
HELIX 21 AC3 ARG D 421 GLY D 443 1 23
HELIX 22 AC4 ASP D 448 LEU D 455 1 8
HELIX 23 AC5 HIS F 630 GLN F 638 1 9
SHEET 1 AA1 2 GLY D 323 LEU D 325 0
SHEET 2 AA1 2 HIS D 331 HIS D 333 -1 O VAL D 332 N ILE D 324
SITE 1 AC1 14 GLN A 263 ARG A 264 HIS A 294 MET A 328
SITE 2 AC1 14 PHE A 329 ARG A 331 SER A 332 ILE A 335
SITE 3 AC1 14 MET A 365 TYR A 369 HIS A 447 TRP A 454
SITE 4 AC1 14 PHE A 461 LEU A 465
SITE 1 AC2 9 ILE D 268 ALA D 271 GLN D 275 LEU D 309
SITE 2 AC2 9 PHE D 313 ARG D 316 ALA D 327 ILE D 345
SITE 3 AC2 9 CYS D 432
CRYST1 102.849 102.849 109.456 90.00 90.00 90.00 P 43 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009723 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009723 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009136 0.00000