data_6A66 # _entry.id 6A66 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6A66 WWPDB D_1300008210 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6A66 _pdbx_database_status.recvd_initial_deposition_date 2018-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Su, J.Y.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Biosci. Rep.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1573-4935 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 38 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Resetting the ligand binding site of placental protein 13/galectin-13 recovers its ability to bind lactose' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1042/BSR20181787 _citation.pdbx_database_id_PubMed 30413611 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Su, J.' 1 0000-0001-8406-1676 primary 'Cui, L.' 2 ? primary 'Si, Y.' 3 ? primary 'Song, C.' 4 ? primary 'Li, Y.' 5 ? primary 'Yang, T.' 6 ? primary 'Wang, H.' 7 ? primary 'Mayo, K.H.' 8 ? primary 'Tai, G.' 9 ? primary 'Zhou, Y.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6A66 _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.231 _cell.length_a_esd ? _cell.length_b 92.060 _cell.length_b_esd ? _cell.length_c 50.682 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Galactoside-binding soluble lectin 13' 16398.750 1 ? R53H 'UNP residues 2-139' ? 2 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Galectin-13,Gal-13 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFHFRVHFGNHVVMNRREFGIWMLEET TDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVCVCN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFHFRVHFGNHVVMNRREFGIWMLEET TDYVPFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVCVCN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 SER n 1 7 LEU n 1 8 PRO n 1 9 VAL n 1 10 PRO n 1 11 TYR n 1 12 LYS n 1 13 LEU n 1 14 PRO n 1 15 VAL n 1 16 SER n 1 17 LEU n 1 18 SER n 1 19 VAL n 1 20 GLY n 1 21 SER n 1 22 CYS n 1 23 VAL n 1 24 ILE n 1 25 ILE n 1 26 LYS n 1 27 GLY n 1 28 THR n 1 29 PRO n 1 30 ILE n 1 31 HIS n 1 32 SER n 1 33 PHE n 1 34 ILE n 1 35 ASN n 1 36 ASP n 1 37 PRO n 1 38 GLN n 1 39 LEU n 1 40 GLN n 1 41 VAL n 1 42 ASP n 1 43 PHE n 1 44 TYR n 1 45 THR n 1 46 ASP n 1 47 MET n 1 48 ASP n 1 49 GLU n 1 50 ASP n 1 51 SER n 1 52 ASP n 1 53 ILE n 1 54 ALA n 1 55 PHE n 1 56 HIS n 1 57 PHE n 1 58 ARG n 1 59 VAL n 1 60 HIS n 1 61 PHE n 1 62 GLY n 1 63 ASN n 1 64 HIS n 1 65 VAL n 1 66 VAL n 1 67 MET n 1 68 ASN n 1 69 ARG n 1 70 ARG n 1 71 GLU n 1 72 PHE n 1 73 GLY n 1 74 ILE n 1 75 TRP n 1 76 MET n 1 77 LEU n 1 78 GLU n 1 79 GLU n 1 80 THR n 1 81 THR n 1 82 ASP n 1 83 TYR n 1 84 VAL n 1 85 PRO n 1 86 PHE n 1 87 GLU n 1 88 ASP n 1 89 GLY n 1 90 LYS n 1 91 GLN n 1 92 PHE n 1 93 GLU n 1 94 LEU n 1 95 CYS n 1 96 ILE n 1 97 TYR n 1 98 VAL n 1 99 HIS n 1 100 TYR n 1 101 ASN n 1 102 GLU n 1 103 TYR n 1 104 GLU n 1 105 ILE n 1 106 LYS n 1 107 VAL n 1 108 ASN n 1 109 GLY n 1 110 ILE n 1 111 ARG n 1 112 ILE n 1 113 TYR n 1 114 GLY n 1 115 PHE n 1 116 VAL n 1 117 HIS n 1 118 ARG n 1 119 ILE n 1 120 PRO n 1 121 PRO n 1 122 SER n 1 123 PHE n 1 124 VAL n 1 125 LYS n 1 126 MET n 1 127 VAL n 1 128 GLN n 1 129 VAL n 1 130 SER n 1 131 ARG n 1 132 ASP n 1 133 ILE n 1 134 SER n 1 135 LEU n 1 136 THR n 1 137 SER n 1 138 VAL n 1 139 CYS n 1 140 VAL n 1 141 CYS n 1 142 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 142 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LGALS13 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PP13_HUMAN _struct_ref.pdbx_db_accession Q9UHV8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGNHVVMNRREFGIWMLEETTDYV PFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVCVCN ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6A66 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UHV8 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 139 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 139 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6A66 GLY A 1 ? UNP Q9UHV8 ? ? 'expression tag' -2 1 1 6A66 SER A 2 ? UNP Q9UHV8 ? ? 'expression tag' -1 2 1 6A66 HIS A 3 ? UNP Q9UHV8 ? ? 'expression tag' 0 3 1 6A66 MET A 4 ? UNP Q9UHV8 ? ? 'expression tag' 1 4 1 6A66 HIS A 56 ? UNP Q9UHV8 ARG 53 'engineered mutation' 53 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6A66 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details PEG _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6A66 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.40 _reflns.d_resolution_low 19.1150 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27115 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.42 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 89.950 _refine.B_iso_mean 31.6709 _refine.B_iso_min 17.130 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6A66 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4000 _refine.ls_d_res_low 19.1150 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27074 _refine.ls_number_reflns_R_free 2011 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4900 _refine.ls_percent_reflns_R_free 7.4300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1848 _refine.ls_R_factor_R_free 0.1949 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1840 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.4300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.4000 _refine_hist.d_res_low 19.1150 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1254 _refine_hist.pdbx_number_residues_total 138 _refine_hist.pdbx_B_iso_mean_ligand 38.81 _refine_hist.pdbx_B_iso_mean_solvent 38.81 _refine_hist.pdbx_number_atoms_protein 1123 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # _struct.entry_id 6A66 _struct.title 'Placental protein 13/galectin-13 variant R53H with Tris' _struct.pdbx_descriptor 'Galactoside-binding soluble lectin 13' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6A66 _struct_keywords.text 'Sugar binding protein' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 32 ? ASP A 36 ? SER A 29 ASP A 33 5 ? 5 HELX_P HELX_P2 AA2 PRO A 120 ? VAL A 124 ? PRO A 117 VAL A 121 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 139 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 141 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 136 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 138 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.060 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 9 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 6 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 10 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 7 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 11 ? PRO A 14 ? TYR A 8 PRO A 11 AA1 2 MET A 126 ? ARG A 131 ? MET A 123 ARG A 128 AA1 3 GLN A 38 ? TYR A 44 ? GLN A 35 TYR A 41 AA1 4 ILE A 53 ? HIS A 60 ? ILE A 50 HIS A 57 AA1 5 HIS A 64 ? GLU A 71 ? HIS A 61 GLU A 68 AA1 6 ILE A 74 ? TRP A 75 ? ILE A 71 TRP A 72 AA2 1 TYR A 11 ? PRO A 14 ? TYR A 8 PRO A 11 AA2 2 MET A 126 ? ARG A 131 ? MET A 123 ARG A 128 AA2 3 GLN A 38 ? TYR A 44 ? GLN A 35 TYR A 41 AA2 4 ILE A 53 ? HIS A 60 ? ILE A 50 HIS A 57 AA2 5 HIS A 64 ? GLU A 71 ? HIS A 61 GLU A 68 AA2 6 GLU A 79 ? THR A 81 ? GLU A 76 THR A 78 AA3 1 ILE A 110 ? VAL A 116 ? ILE A 107 VAL A 113 AA3 2 GLU A 102 ? VAL A 107 ? GLU A 99 VAL A 104 AA3 3 PHE A 92 ? VAL A 98 ? PHE A 89 VAL A 95 AA3 4 CYS A 22 ? PRO A 29 ? CYS A 19 PRO A 26 AA3 5 ILE A 133 ? CYS A 141 ? ILE A 130 CYS A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 13 ? N LEU A 10 O VAL A 127 ? O VAL A 124 AA1 2 3 O SER A 130 ? O SER A 127 N GLN A 40 ? N GLN A 37 AA1 3 4 N LEU A 39 ? N LEU A 36 O VAL A 59 ? O VAL A 56 AA1 4 5 N HIS A 60 ? N HIS A 57 O HIS A 64 ? O HIS A 61 AA1 5 6 N GLU A 71 ? N GLU A 68 O ILE A 74 ? O ILE A 71 AA2 1 2 N LEU A 13 ? N LEU A 10 O VAL A 127 ? O VAL A 124 AA2 2 3 O SER A 130 ? O SER A 127 N GLN A 40 ? N GLN A 37 AA2 3 4 N LEU A 39 ? N LEU A 36 O VAL A 59 ? O VAL A 56 AA2 4 5 N HIS A 60 ? N HIS A 57 O HIS A 64 ? O HIS A 61 AA2 5 6 N MET A 67 ? N MET A 64 O GLU A 79 ? O GLU A 76 AA3 1 2 O ILE A 112 ? O ILE A 109 N ILE A 105 ? N ILE A 102 AA3 2 3 O LYS A 106 ? O LYS A 103 N CYS A 95 ? N CYS A 92 AA3 3 4 O LEU A 94 ? O LEU A 91 N ILE A 25 ? N ILE A 22 AA3 4 5 N THR A 28 ? N THR A 25 O SER A 134 ? O SER A 131 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id TRS _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'binding site for residue TRS A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 36 ? ASP A 33 . ? 6_445 ? 2 AC1 6 HIS A 56 ? HIS A 53 . ? 1_555 ? 3 AC1 6 ARG A 58 ? ARG A 55 . ? 1_555 ? 4 AC1 6 ASN A 68 ? ASN A 65 . ? 1_555 ? 5 AC1 6 TRP A 75 ? TRP A 72 . ? 1_555 ? 6 AC1 6 GLU A 78 ? GLU A 75 . ? 1_555 ? # _atom_sites.entry_id 6A66 _atom_sites.fract_transf_matrix[1][1] 0.017173 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010862 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019731 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 SER 6 3 3 SER SER A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 PRO 8 5 5 PRO PRO A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 PRO 10 7 7 PRO PRO A . n A 1 11 TYR 11 8 8 TYR TYR A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 PRO 14 11 11 PRO PRO A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 SER 18 15 15 SER SER A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 SER 21 18 18 SER SER A . n A 1 22 CYS 22 19 19 CYS CYS A . n A 1 23 VAL 23 20 20 VAL VAL A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 ILE 25 22 22 ILE ILE A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 GLY 27 24 24 GLY GLY A . n A 1 28 THR 28 25 25 THR THR A . n A 1 29 PRO 29 26 26 PRO PRO A . n A 1 30 ILE 30 27 27 ILE ILE A . n A 1 31 HIS 31 28 28 HIS HIS A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 PHE 33 30 30 PHE PHE A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 ASN 35 32 32 ASN ASN A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 PRO 37 34 34 PRO PRO A . n A 1 38 GLN 38 35 35 GLN GLN A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 GLN 40 37 37 GLN GLN A . n A 1 41 VAL 41 38 38 VAL VAL A . n A 1 42 ASP 42 39 39 ASP ASP A . n A 1 43 PHE 43 40 40 PHE PHE A . n A 1 44 TYR 44 41 41 TYR TYR A . n A 1 45 THR 45 42 42 THR THR A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 MET 47 44 44 MET MET A . n A 1 48 ASP 48 45 45 ASP ASP A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 ALA 54 51 51 ALA ALA A . n A 1 55 PHE 55 52 52 PHE PHE A . n A 1 56 HIS 56 53 53 HIS HIS A . n A 1 57 PHE 57 54 54 PHE PHE A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 VAL 59 56 56 VAL VAL A . n A 1 60 HIS 60 57 57 HIS HIS A . n A 1 61 PHE 61 58 58 PHE PHE A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 HIS 64 61 61 HIS HIS A . n A 1 65 VAL 65 62 62 VAL VAL A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 MET 67 64 64 MET MET A . n A 1 68 ASN 68 65 65 ASN ASN A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 ARG 70 67 67 ARG ARG A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 PHE 72 69 69 PHE PHE A . n A 1 73 GLY 73 70 70 GLY GLY A . n A 1 74 ILE 74 71 71 ILE ILE A . n A 1 75 TRP 75 72 72 TRP TRP A . n A 1 76 MET 76 73 73 MET MET A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 GLU 78 75 75 GLU GLU A . n A 1 79 GLU 79 76 76 GLU GLU A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 THR 81 78 78 THR THR A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 VAL 84 81 81 VAL VAL A . n A 1 85 PRO 85 82 82 PRO PRO A . n A 1 86 PHE 86 83 83 PHE PHE A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 GLY 89 86 86 GLY GLY A . n A 1 90 LYS 90 87 87 LYS LYS A . n A 1 91 GLN 91 88 88 GLN GLN A . n A 1 92 PHE 92 89 89 PHE PHE A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 CYS 95 92 92 CYS CYS A . n A 1 96 ILE 96 93 93 ILE ILE A . n A 1 97 TYR 97 94 94 TYR TYR A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 HIS 99 96 96 HIS HIS A . n A 1 100 TYR 100 97 97 TYR TYR A . n A 1 101 ASN 101 98 98 ASN ASN A . n A 1 102 GLU 102 99 99 GLU GLU A . n A 1 103 TYR 103 100 100 TYR TYR A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 ILE 105 102 102 ILE ILE A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 GLY 109 106 106 GLY GLY A . n A 1 110 ILE 110 107 107 ILE ILE A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 ILE 112 109 109 ILE ILE A . n A 1 113 TYR 113 110 110 TYR TYR A . n A 1 114 GLY 114 111 111 GLY GLY A . n A 1 115 PHE 115 112 112 PHE PHE A . n A 1 116 VAL 116 113 113 VAL VAL A . n A 1 117 HIS 117 114 114 HIS HIS A . n A 1 118 ARG 118 115 115 ARG ARG A . n A 1 119 ILE 119 116 116 ILE ILE A . n A 1 120 PRO 120 117 117 PRO PRO A . n A 1 121 PRO 121 118 118 PRO PRO A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 PHE 123 120 120 PHE PHE A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 MET 126 123 123 MET MET A . n A 1 127 VAL 127 124 124 VAL VAL A . n A 1 128 GLN 128 125 125 GLN GLN A . n A 1 129 VAL 129 126 126 VAL VAL A . n A 1 130 SER 130 127 127 SER SER A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 SER 134 131 131 SER SER A . n A 1 135 LEU 135 132 132 LEU LEU A . n A 1 136 THR 136 133 133 THR THR A . n A 1 137 SER 137 134 134 SER SER A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 CYS 139 136 136 CYS CYS A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 CYS 141 138 138 CYS CYS A . n A 1 142 ASN 142 139 139 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS 1 201 1 TRS LIG A . C 3 HOH 1 301 68 HOH HOH A . C 3 HOH 2 302 41 HOH HOH A . C 3 HOH 3 303 77 HOH HOH A . C 3 HOH 4 304 44 HOH HOH A . C 3 HOH 5 305 33 HOH HOH A . C 3 HOH 6 306 38 HOH HOH A . C 3 HOH 7 307 97 HOH HOH A . C 3 HOH 8 308 57 HOH HOH A . C 3 HOH 9 309 42 HOH HOH A . C 3 HOH 10 310 64 HOH HOH A . C 3 HOH 11 311 31 HOH HOH A . C 3 HOH 12 312 22 HOH HOH A . C 3 HOH 13 313 43 HOH HOH A . C 3 HOH 14 314 87 HOH HOH A . C 3 HOH 15 315 3 HOH HOH A . C 3 HOH 16 316 109 HOH HOH A . C 3 HOH 17 317 25 HOH HOH A . C 3 HOH 18 318 49 HOH HOH A . C 3 HOH 19 319 15 HOH HOH A . C 3 HOH 20 320 40 HOH HOH A . C 3 HOH 21 321 19 HOH HOH A . C 3 HOH 22 322 5 HOH HOH A . C 3 HOH 23 323 84 HOH HOH A . C 3 HOH 24 324 91 HOH HOH A . C 3 HOH 25 325 11 HOH HOH A . C 3 HOH 26 326 1 HOH HOH A . C 3 HOH 27 327 99 HOH HOH A . C 3 HOH 28 328 2 HOH HOH A . C 3 HOH 29 329 27 HOH HOH A . C 3 HOH 30 330 24 HOH HOH A . C 3 HOH 31 331 6 HOH HOH A . C 3 HOH 32 332 60 HOH HOH A . C 3 HOH 33 333 66 HOH HOH A . C 3 HOH 34 334 81 HOH HOH A . C 3 HOH 35 335 7 HOH HOH A . C 3 HOH 36 336 34 HOH HOH A . C 3 HOH 37 337 10 HOH HOH A . C 3 HOH 38 338 89 HOH HOH A . C 3 HOH 39 339 48 HOH HOH A . C 3 HOH 40 340 12 HOH HOH A . C 3 HOH 41 341 14 HOH HOH A . C 3 HOH 42 342 21 HOH HOH A . C 3 HOH 43 343 58 HOH HOH A . C 3 HOH 44 344 13 HOH HOH A . C 3 HOH 45 345 61 HOH HOH A . C 3 HOH 46 346 29 HOH HOH A . C 3 HOH 47 347 23 HOH HOH A . C 3 HOH 48 348 82 HOH HOH A . C 3 HOH 49 349 20 HOH HOH A . C 3 HOH 50 350 32 HOH HOH A . C 3 HOH 51 351 73 HOH HOH A . C 3 HOH 52 352 30 HOH HOH A . C 3 HOH 53 353 83 HOH HOH A . C 3 HOH 54 354 39 HOH HOH A . C 3 HOH 55 355 71 HOH HOH A . C 3 HOH 56 356 52 HOH HOH A . C 3 HOH 57 357 51 HOH HOH A . C 3 HOH 58 358 70 HOH HOH A . C 3 HOH 59 359 90 HOH HOH A . C 3 HOH 60 360 55 HOH HOH A . C 3 HOH 61 361 8 HOH HOH A . C 3 HOH 62 362 16 HOH HOH A . C 3 HOH 63 363 78 HOH HOH A . C 3 HOH 64 364 26 HOH HOH A . C 3 HOH 65 365 18 HOH HOH A . C 3 HOH 66 366 67 HOH HOH A . C 3 HOH 67 367 37 HOH HOH A . C 3 HOH 68 368 9 HOH HOH A . C 3 HOH 69 369 85 HOH HOH A . C 3 HOH 70 370 54 HOH HOH A . C 3 HOH 71 371 28 HOH HOH A . C 3 HOH 72 372 4 HOH HOH A . C 3 HOH 73 373 35 HOH HOH A . C 3 HOH 74 374 50 HOH HOH A . C 3 HOH 75 375 65 HOH HOH A . C 3 HOH 76 376 36 HOH HOH A . C 3 HOH 77 377 17 HOH HOH A . C 3 HOH 78 378 88 HOH HOH A . C 3 HOH 79 379 63 HOH HOH A . C 3 HOH 80 380 92 HOH HOH A . C 3 HOH 81 381 103 HOH HOH A . C 3 HOH 82 382 80 HOH HOH A . C 3 HOH 83 383 76 HOH HOH A . C 3 HOH 84 384 96 HOH HOH A . C 3 HOH 85 385 112 HOH HOH A . C 3 HOH 86 386 72 HOH HOH A . C 3 HOH 87 387 46 HOH HOH A . C 3 HOH 88 388 108 HOH HOH A . C 3 HOH 89 389 106 HOH HOH A . C 3 HOH 90 390 69 HOH HOH A . C 3 HOH 91 391 93 HOH HOH A . C 3 HOH 92 392 79 HOH HOH A . C 3 HOH 93 393 104 HOH HOH A . C 3 HOH 94 394 45 HOH HOH A . C 3 HOH 95 395 86 HOH HOH A . C 3 HOH 96 396 100 HOH HOH A . C 3 HOH 97 397 110 HOH HOH A . C 3 HOH 98 398 105 HOH HOH A . C 3 HOH 99 399 53 HOH HOH A . C 3 HOH 100 400 94 HOH HOH A . C 3 HOH 101 401 101 HOH HOH A . C 3 HOH 102 402 59 HOH HOH A . C 3 HOH 103 403 56 HOH HOH A . C 3 HOH 104 404 74 HOH HOH A . C 3 HOH 105 405 102 HOH HOH A . C 3 HOH 106 406 98 HOH HOH A . C 3 HOH 107 407 47 HOH HOH A . C 3 HOH 108 408 107 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 1 2 A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 381 ? C HOH . 2 1 A HOH 394 ? C HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-12-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(1.10.1_2155: ???)' _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 52 ? ? -164.03 118.99 2 1 ASN A 60 ? ? -136.31 -76.21 3 1 MET A 73 ? ? -95.57 -156.90 4 1 PRO A 82 ? ? -78.68 45.27 5 1 ARG A 128 ? ? 89.97 -141.20 6 1 ASP A 129 ? ? -94.29 57.71 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id VAL _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 62 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CG2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id VAL _pdbx_unobs_or_zero_occ_atoms.label_seq_id 65 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31500637 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #