HEADER HYDROLASE 28-JUN-18 6A6I TITLE CRYSTAL STRUCTURE OF THE WINGED-HELIX DOMAIN OF COCKAYNE SYNDROME TITLE 2 GROUP B PROTEIN IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCISION REPAIR CROSS-COMPLEMENTING RODENT REPAIR COMPND 3 DEFICIENCY, COMPLEMENTATION GROUP 6 VARIANT; COMPND 4 CHAIN: A, C, E, G; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POLYUBIQUITIN-B; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 1-76; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: POLYUBIQUITIN-B; COMPND 14 CHAIN: F, H; COMPND 15 FRAGMENT: UNP RESIDUES 1-77; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: UBB; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 GENE: UBB; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, HELICASE, UBIQUITIN, MOLECULAR SIGNALING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.TAKAHASHI,Y.SATO,S.FUKAI REVDAT 4 22-NOV-23 6A6I 1 REMARK REVDAT 3 01-MAY-19 6A6I 1 JRNL REVDAT 2 27-FEB-19 6A6I 1 JRNL REVDAT 1 13-FEB-19 6A6I 0 JRNL AUTH T.S.TAKAHASHI,Y.SATO,A.YAMAGATA,S.GOTO-ITO,M.SAIJO,S.FUKAI JRNL TITL STRUCTURAL BASIS OF UBIQUITIN RECOGNITION BY THE JRNL TITL 2 WINGED-HELIX DOMAIN OF COCKAYNE SYNDROME GROUP B PROTEIN. JRNL REF NUCLEIC ACIDS RES. V. 47 3784 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30753618 JRNL DOI 10.1093/NAR/GKZ081 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 21345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9647 - 5.1967 1.00 2597 148 0.1762 0.2212 REMARK 3 2 5.1967 - 4.1261 1.00 2578 127 0.1447 0.2072 REMARK 3 3 4.1261 - 3.6049 1.00 2558 140 0.1520 0.1968 REMARK 3 4 3.6049 - 3.2755 1.00 2573 116 0.1785 0.2240 REMARK 3 5 3.2755 - 3.0408 1.00 2547 148 0.1975 0.2554 REMARK 3 6 3.0408 - 2.8616 1.00 2508 168 0.2181 0.2978 REMARK 3 7 2.8616 - 2.7183 1.00 2557 150 0.2315 0.3074 REMARK 3 8 2.7183 - 2.6000 0.92 2328 102 0.2419 0.2911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5378 REMARK 3 ANGLE : 0.677 7235 REMARK 3 CHIRALITY : 0.027 824 REMARK 3 PLANARITY : 0.002 939 REMARK 3 DIHEDRAL : 11.450 2069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1400 THROUGH 1493) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3185 1.7067 31.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.2577 REMARK 3 T33: 0.3085 T12: 0.0024 REMARK 3 T13: -0.0104 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 2.2086 L22: 2.9432 REMARK 3 L33: 3.2946 L12: 1.0056 REMARK 3 L13: -0.2282 L23: 0.8253 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.1615 S13: -0.1376 REMARK 3 S21: 0.1057 S22: -0.1174 S23: -0.2608 REMARK 3 S31: 0.2286 S32: 0.2386 S33: 0.0923 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 74) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4694 -1.1462 20.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.2517 REMARK 3 T33: 0.2332 T12: -0.0099 REMARK 3 T13: 0.0048 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.3696 L22: 2.4334 REMARK 3 L33: 4.3708 L12: 0.2799 REMARK 3 L13: 0.7711 L23: -1.3296 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: -0.0638 S13: -0.0510 REMARK 3 S21: -0.1467 S22: -0.0018 S23: 0.0557 REMARK 3 S31: 0.2492 S32: -0.3613 S33: -0.0868 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1400 THROUGH 1493) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6638 22.4184 34.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.3223 T22: 0.2558 REMARK 3 T33: 0.2600 T12: -0.0406 REMARK 3 T13: -0.0131 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.9038 L22: 3.3034 REMARK 3 L33: 2.3995 L12: -1.0074 REMARK 3 L13: -0.2554 L23: -0.6894 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.3368 S13: 0.0128 REMARK 3 S21: 0.3942 S22: 0.0202 S23: 0.0550 REMARK 3 S31: -0.2167 S32: 0.0641 S33: -0.0281 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 76) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3355 30.5281 14.8865 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.2038 REMARK 3 T33: 0.2358 T12: 0.0276 REMARK 3 T13: 0.0222 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.8178 L22: 2.5179 REMARK 3 L33: 2.6514 L12: 1.7081 REMARK 3 L13: 0.7739 L23: -0.4618 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.3029 S13: 0.0921 REMARK 3 S21: -0.0020 S22: 0.0352 S23: 0.0935 REMARK 3 S31: 0.0663 S32: -0.1355 S33: 0.0364 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 1400 THROUGH 1493) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8814 0.2642 5.4328 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.2632 REMARK 3 T33: 0.3134 T12: 0.0226 REMARK 3 T13: 0.0167 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.5207 L22: 2.8414 REMARK 3 L33: 4.3540 L12: 0.4291 REMARK 3 L13: 1.3493 L23: 1.9886 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.0611 S13: -0.0369 REMARK 3 S21: 0.1283 S22: -0.0812 S23: 0.1507 REMARK 3 S31: 0.1187 S32: 0.0554 S33: 0.0476 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 1 THROUGH 74) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9383 19.9079 6.3685 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.2614 REMARK 3 T33: 0.2897 T12: -0.0304 REMARK 3 T13: 0.0048 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 4.0099 L22: 3.9792 REMARK 3 L33: 2.4599 L12: -0.0063 REMARK 3 L13: -1.2861 L23: 0.7691 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: 0.1587 S13: 0.3713 REMARK 3 S21: -0.0797 S22: 0.0602 S23: -0.0810 REMARK 3 S31: -0.3087 S32: -0.0089 S33: -0.1412 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 1414 THROUGH 1493) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2670 24.0732 46.6542 REMARK 3 T TENSOR REMARK 3 T11: 0.4030 T22: 0.4354 REMARK 3 T33: 0.2939 T12: 0.0032 REMARK 3 T13: 0.0437 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.3913 L22: 3.1936 REMARK 3 L33: 2.3154 L12: 0.0338 REMARK 3 L13: 0.5803 L23: -0.1742 REMARK 3 S TENSOR REMARK 3 S11: 0.0961 S12: -0.0819 S13: 0.2057 REMARK 3 S21: -0.3680 S22: -0.0956 S23: 0.0570 REMARK 3 S31: -0.4747 S32: -0.0473 S33: -0.1056 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 1 THROUGH 74) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3054 3.5894 54.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.4203 REMARK 3 T33: 0.4029 T12: -0.0066 REMARK 3 T13: 0.0300 T23: -0.0646 REMARK 3 L TENSOR REMARK 3 L11: 3.8435 L22: 3.9870 REMARK 3 L33: 4.4388 L12: -0.6716 REMARK 3 L13: -1.1047 L23: 0.2801 REMARK 3 S TENSOR REMARK 3 S11: -0.1728 S12: 0.3535 S13: -0.4479 REMARK 3 S21: 0.1306 S22: 0.0452 S23: 0.1472 REMARK 3 S31: 0.2318 S32: -0.0312 S33: 0.1240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300008211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.21000 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58300 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG1000, 10% GLYCEROL, 0.1 M REMARK 280 TRICINE (PH 8.0), AND 350 MM MGCL2., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.85250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1396 REMARK 465 PRO A 1397 REMARK 465 GLY A 1398 REMARK 465 HIS A 1399 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 GLY C 1396 REMARK 465 PRO C 1397 REMARK 465 GLY C 1398 REMARK 465 HIS C 1399 REMARK 465 GLY E 1396 REMARK 465 PRO E 1397 REMARK 465 GLY E 1398 REMARK 465 HIS E 1399 REMARK 465 GLY F 75 REMARK 465 GLY F 76 REMARK 465 ASP F 77 REMARK 465 GLY G 1396 REMARK 465 PRO G 1397 REMARK 465 GLY G 1398 REMARK 465 HIS G 1399 REMARK 465 MET G 1400 REMARK 465 LEU G 1401 REMARK 465 PRO G 1402 REMARK 465 GLU G 1403 REMARK 465 ARG G 1404 REMARK 465 LEU G 1405 REMARK 465 GLU G 1406 REMARK 465 SER G 1407 REMARK 465 GLU G 1408 REMARK 465 SER G 1409 REMARK 465 GLY G 1410 REMARK 465 HIS G 1411 REMARK 465 LEU G 1412 REMARK 465 ARG G 1413 REMARK 465 GLY H 75 REMARK 465 GLY H 76 REMARK 465 ASP H 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY D 76 NZ LYS F 48 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN D 62 -169.44 -110.98 REMARK 500 GLU E1408 -5.79 64.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL G 1501 DBREF 6A6I A 1401 1493 UNP Q59FF6 Q59FF6_HUMAN 778 870 DBREF 6A6I B 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 6A6I C 1401 1493 UNP Q59FF6 Q59FF6_HUMAN 778 870 DBREF 6A6I D 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 6A6I E 1401 1493 UNP Q59FF6 Q59FF6_HUMAN 778 870 DBREF 6A6I F 1 77 UNP P0CG47 UBB_HUMAN 1 77 DBREF 6A6I G 1401 1493 UNP Q59FF6 Q59FF6_HUMAN 778 870 DBREF 6A6I H 1 77 UNP P0CG47 UBB_HUMAN 1 77 SEQADV 6A6I GLY A 1396 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I PRO A 1397 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I GLY A 1398 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I HIS A 1399 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I MET A 1400 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I ARG B 48 UNP P0CG47 LYS 48 ENGINEERED MUTATION SEQADV 6A6I GLY C 1396 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I PRO C 1397 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I GLY C 1398 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I HIS C 1399 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I MET C 1400 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I ARG D 48 UNP P0CG47 LYS 48 ENGINEERED MUTATION SEQADV 6A6I GLY E 1396 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I PRO E 1397 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I GLY E 1398 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I HIS E 1399 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I MET E 1400 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I ASP F 77 UNP P0CG47 MET 77 ENGINEERED MUTATION SEQADV 6A6I GLY G 1396 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I PRO G 1397 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I GLY G 1398 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I HIS G 1399 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I MET G 1400 UNP Q59FF6 EXPRESSION TAG SEQADV 6A6I ASP H 77 UNP P0CG47 MET 77 ENGINEERED MUTATION SEQRES 1 A 98 GLY PRO GLY HIS MET LEU PRO GLU ARG LEU GLU SER GLU SEQRES 2 A 98 SER GLY HIS LEU ARG GLU ALA SER ALA LEU LEU PRO THR SEQRES 3 A 98 THR GLU HIS ASP ASP LEU LEU VAL GLU MET ARG ASN PHE SEQRES 4 A 98 ILE ALA PHE GLN ALA HIS THR ASP GLY GLN ALA SER THR SEQRES 5 A 98 ARG GLU ILE LEU GLN GLU PHE GLU SER LYS LEU SER ALA SEQRES 6 A 98 SER GLN SER CYS VAL PHE ARG GLU LEU LEU ARG ASN LEU SEQRES 7 A 98 CYS THR PHE HIS ARG THR SER GLY GLY GLU GLY ILE TRP SEQRES 8 A 98 LYS LEU LYS PRO GLU TYR CYS SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 98 GLY PRO GLY HIS MET LEU PRO GLU ARG LEU GLU SER GLU SEQRES 2 C 98 SER GLY HIS LEU ARG GLU ALA SER ALA LEU LEU PRO THR SEQRES 3 C 98 THR GLU HIS ASP ASP LEU LEU VAL GLU MET ARG ASN PHE SEQRES 4 C 98 ILE ALA PHE GLN ALA HIS THR ASP GLY GLN ALA SER THR SEQRES 5 C 98 ARG GLU ILE LEU GLN GLU PHE GLU SER LYS LEU SER ALA SEQRES 6 C 98 SER GLN SER CYS VAL PHE ARG GLU LEU LEU ARG ASN LEU SEQRES 7 C 98 CYS THR PHE HIS ARG THR SER GLY GLY GLU GLY ILE TRP SEQRES 8 C 98 LYS LEU LYS PRO GLU TYR CYS SEQRES 1 D 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 D 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 E 98 GLY PRO GLY HIS MET LEU PRO GLU ARG LEU GLU SER GLU SEQRES 2 E 98 SER GLY HIS LEU ARG GLU ALA SER ALA LEU LEU PRO THR SEQRES 3 E 98 THR GLU HIS ASP ASP LEU LEU VAL GLU MET ARG ASN PHE SEQRES 4 E 98 ILE ALA PHE GLN ALA HIS THR ASP GLY GLN ALA SER THR SEQRES 5 E 98 ARG GLU ILE LEU GLN GLU PHE GLU SER LYS LEU SER ALA SEQRES 6 E 98 SER GLN SER CYS VAL PHE ARG GLU LEU LEU ARG ASN LEU SEQRES 7 E 98 CYS THR PHE HIS ARG THR SER GLY GLY GLU GLY ILE TRP SEQRES 8 E 98 LYS LEU LYS PRO GLU TYR CYS SEQRES 1 F 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 F 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP SEQRES 1 G 98 GLY PRO GLY HIS MET LEU PRO GLU ARG LEU GLU SER GLU SEQRES 2 G 98 SER GLY HIS LEU ARG GLU ALA SER ALA LEU LEU PRO THR SEQRES 3 G 98 THR GLU HIS ASP ASP LEU LEU VAL GLU MET ARG ASN PHE SEQRES 4 G 98 ILE ALA PHE GLN ALA HIS THR ASP GLY GLN ALA SER THR SEQRES 5 G 98 ARG GLU ILE LEU GLN GLU PHE GLU SER LYS LEU SER ALA SEQRES 6 G 98 SER GLN SER CYS VAL PHE ARG GLU LEU LEU ARG ASN LEU SEQRES 7 G 98 CYS THR PHE HIS ARG THR SER GLY GLY GLU GLY ILE TRP SEQRES 8 G 98 LYS LEU LYS PRO GLU TYR CYS SEQRES 1 H 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 H 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 H 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 H 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 H 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 H 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP HET GOL B 101 6 HET CL C1501 1 HET GOL D 101 6 HET GOL G1501 6 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 GOL 3(C3 H8 O3) FORMUL 10 CL CL 1- FORMUL 13 HOH *105(H2 O) HELIX 1 AA1 LEU A 1401 GLU A 1408 1 8 HELIX 2 AA2 HIS A 1424 GLN A 1438 1 15 HELIX 3 AA3 THR A 1447 GLU A 1455 1 9 HELIX 4 AA4 SER A 1459 LEU A 1473 1 15 HELIX 5 AA5 PRO A 1490 CYS A 1493 5 4 HELIX 6 AA6 THR B 22 GLY B 35 1 14 HELIX 7 AA7 PRO B 37 ASP B 39 5 3 HELIX 8 AA8 LEU B 56 ASN B 60 5 5 HELIX 9 AA9 LEU C 1401 GLU C 1408 1 8 HELIX 10 AB1 HIS C 1424 GLN C 1438 1 15 HELIX 11 AB2 THR C 1447 GLU C 1455 1 9 HELIX 12 AB3 SER C 1459 LEU C 1473 1 15 HELIX 13 AB4 PRO C 1490 CYS C 1493 5 4 HELIX 14 AB5 THR D 22 GLY D 35 1 14 HELIX 15 AB6 PRO D 37 ASP D 39 5 3 HELIX 16 AB7 LEU D 56 ASN D 60 5 5 HELIX 17 AB8 LEU E 1401 SER E 1407 1 7 HELIX 18 AB9 HIS E 1424 GLN E 1438 1 15 HELIX 19 AC1 THR E 1447 GLU E 1455 1 9 HELIX 20 AC2 SER E 1459 LEU E 1473 1 15 HELIX 21 AC3 PRO E 1490 CYS E 1493 5 4 HELIX 22 AC4 THR F 22 GLY F 35 1 14 HELIX 23 AC5 PRO F 37 ASP F 39 5 3 HELIX 24 AC6 LEU F 56 ASN F 60 5 5 HELIX 25 AC7 THR G 1421 GLU G 1423 5 3 HELIX 26 AC8 HIS G 1424 GLN G 1438 1 15 HELIX 27 AC9 THR G 1447 GLU G 1455 1 9 HELIX 28 AD1 SER G 1459 LEU G 1473 1 15 HELIX 29 AD2 PRO G 1490 CYS G 1493 5 4 HELIX 30 AD3 THR H 22 GLY H 35 1 14 HELIX 31 AD4 PRO H 37 ASP H 39 5 3 HELIX 32 AD5 LEU H 56 ASN H 60 5 5 SHEET 1 AA1 3 GLN A1444 SER A1446 0 SHEET 2 AA1 3 GLY A1484 LEU A1488 -1 O TRP A1486 N ALA A1445 SHEET 3 AA1 3 CYS A1474 ARG A1478 -1 N HIS A1477 O ILE A1485 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA2 5 ARG B 48 GLN B 49 -1 O ARG B 48 N PHE B 45 SHEET 1 AA3 3 GLN C1444 SER C1446 0 SHEET 2 AA3 3 GLY C1484 LEU C1488 -1 O TRP C1486 N ALA C1445 SHEET 3 AA3 3 CYS C1474 ARG C1478 -1 N HIS C1477 O ILE C1485 SHEET 1 AA4 5 THR D 12 GLU D 16 0 SHEET 2 AA4 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 AA4 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AA4 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AA4 5 ARG D 48 GLN D 49 -1 O ARG D 48 N PHE D 45 SHEET 1 AA5 3 GLN E1444 SER E1446 0 SHEET 2 AA5 3 GLY E1484 LEU E1488 -1 O TRP E1486 N ALA E1445 SHEET 3 AA5 3 CYS E1474 ARG E1478 -1 N HIS E1477 O ILE E1485 SHEET 1 AA6 5 THR F 12 GLU F 16 0 SHEET 2 AA6 5 GLN F 2 LYS F 6 -1 N ILE F 3 O LEU F 15 SHEET 3 AA6 5 THR F 66 LEU F 71 1 O LEU F 67 N PHE F 4 SHEET 4 AA6 5 GLN F 41 PHE F 45 -1 N ILE F 44 O HIS F 68 SHEET 5 AA6 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 SHEET 1 AA7 3 GLN G1444 SER G1446 0 SHEET 2 AA7 3 GLY G1484 LEU G1488 -1 O TRP G1486 N ALA G1445 SHEET 3 AA7 3 CYS G1474 ARG G1478 -1 N HIS G1477 O ILE G1485 SHEET 1 AA8 5 THR H 12 GLU H 16 0 SHEET 2 AA8 5 GLN H 2 LYS H 6 -1 N ILE H 3 O LEU H 15 SHEET 3 AA8 5 THR H 66 LEU H 71 1 O LEU H 67 N PHE H 4 SHEET 4 AA8 5 GLN H 41 PHE H 45 -1 N ILE H 44 O HIS H 68 SHEET 5 AA8 5 LYS H 48 GLN H 49 -1 O LYS H 48 N PHE H 45 SSBOND 1 CYS A 1464 CYS E 1464 1555 1555 2.03 SSBOND 2 CYS C 1464 CYS G 1464 1555 1555 2.03 SITE 1 AC1 4 ARG B 48 ARG B 54 HOH B 201 GOL D 101 SITE 1 AC2 6 ARG A1471 THR A1475 PHE A1476 ARG C1471 SITE 2 AC2 6 THR C1475 PHE C1476 SITE 1 AC3 4 ARG B 54 GOL B 101 ARG D 54 THR F 14 SITE 1 AC4 1 THR G1447 CRYST1 54.161 101.705 66.008 90.00 101.81 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018463 0.000000 0.003862 0.00000 SCALE2 0.000000 0.009832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015477 0.00000