data_6A7S # _entry.id 6A7S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6A7S WWPDB D_1300008287 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6A7T _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6A7S _pdbx_database_status.recvd_initial_deposition_date 2018-07-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Unno, H.' 1 0000-0001-5917-269X 'Hatakeyama, T.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 766 _citation.page_last 778 _citation.title 'Novel Ca2+-independent carbohydrate recognition of the C-type lectins, SPL-1 and SPL-2, from the bivalve Saxidomus purpuratus.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3592 _citation.pdbx_database_id_PubMed 30793424 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Unno, H.' 1 ? primary 'Itakura, S.' 2 ? primary 'Higuchi, S.' 3 ? primary 'Goda, S.' 4 ? primary 'Yamaguchi, K.' 5 ? primary 'Hatakeyama, T.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6A7S _cell.details ? _cell.formula_units_Z ? _cell.length_a 91.235 _cell.length_a_esd ? _cell.length_b 91.235 _cell.length_b_esd ? _cell.length_c 48.791 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'N-acetylglucosamine-specific lectin' 17898.779 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-galactopyranose 221.208 1 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 87 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLNGASIIVSLFLCFVGGAYACCSEDDCPSGWKFFGGSCYLFDEGSRGWEGSKAFCESKDASLVTVECSKEDDFIRGILS GQTAKHYYWIGARWNEEHNDYRWIDGSPFTFIGWGPGKPDNNKGCLDYLNYKEVVWQWNDHVDCENTNGPCICEIDCSD ; _entity_poly.pdbx_seq_one_letter_code_can ;MLNGASIIVSLFLCFVGGAYACCSEDDCPSGWKFFGGSCYLFDEGSRGWEGSKAFCESKDASLVTVECSKEDDFIRGILS GQTAKHYYWIGARWNEEHNDYRWIDGSPFTFIGWGPGKPDNNKGCLDYLNYKEVVWQWNDHVDCENTNGPCICEIDCSD ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 ASN n 1 4 GLY n 1 5 ALA n 1 6 SER n 1 7 ILE n 1 8 ILE n 1 9 VAL n 1 10 SER n 1 11 LEU n 1 12 PHE n 1 13 LEU n 1 14 CYS n 1 15 PHE n 1 16 VAL n 1 17 GLY n 1 18 GLY n 1 19 ALA n 1 20 TYR n 1 21 ALA n 1 22 CYS n 1 23 CYS n 1 24 SER n 1 25 GLU n 1 26 ASP n 1 27 ASP n 1 28 CYS n 1 29 PRO n 1 30 SER n 1 31 GLY n 1 32 TRP n 1 33 LYS n 1 34 PHE n 1 35 PHE n 1 36 GLY n 1 37 GLY n 1 38 SER n 1 39 CYS n 1 40 TYR n 1 41 LEU n 1 42 PHE n 1 43 ASP n 1 44 GLU n 1 45 GLY n 1 46 SER n 1 47 ARG n 1 48 GLY n 1 49 TRP n 1 50 GLU n 1 51 GLY n 1 52 SER n 1 53 LYS n 1 54 ALA n 1 55 PHE n 1 56 CYS n 1 57 GLU n 1 58 SER n 1 59 LYS n 1 60 ASP n 1 61 ALA n 1 62 SER n 1 63 LEU n 1 64 VAL n 1 65 THR n 1 66 VAL n 1 67 GLU n 1 68 CYS n 1 69 SER n 1 70 LYS n 1 71 GLU n 1 72 ASP n 1 73 ASP n 1 74 PHE n 1 75 ILE n 1 76 ARG n 1 77 GLY n 1 78 ILE n 1 79 LEU n 1 80 SER n 1 81 GLY n 1 82 GLN n 1 83 THR n 1 84 ALA n 1 85 LYS n 1 86 HIS n 1 87 TYR n 1 88 TYR n 1 89 TRP n 1 90 ILE n 1 91 GLY n 1 92 ALA n 1 93 ARG n 1 94 TRP n 1 95 ASN n 1 96 GLU n 1 97 GLU n 1 98 HIS n 1 99 ASN n 1 100 ASP n 1 101 TYR n 1 102 ARG n 1 103 TRP n 1 104 ILE n 1 105 ASP n 1 106 GLY n 1 107 SER n 1 108 PRO n 1 109 PHE n 1 110 THR n 1 111 PHE n 1 112 ILE n 1 113 GLY n 1 114 TRP n 1 115 GLY n 1 116 PRO n 1 117 GLY n 1 118 LYS n 1 119 PRO n 1 120 ASP n 1 121 ASN n 1 122 ASN n 1 123 LYS n 1 124 GLY n 1 125 CYS n 1 126 LEU n 1 127 ASP n 1 128 TYR n 1 129 LEU n 1 130 ASN n 1 131 TYR n 1 132 LYS n 1 133 GLU n 1 134 VAL n 1 135 VAL n 1 136 TRP n 1 137 GLN n 1 138 TRP n 1 139 ASN n 1 140 ASP n 1 141 HIS n 1 142 VAL n 1 143 ASP n 1 144 CYS n 1 145 GLU n 1 146 ASN n 1 147 THR n 1 148 ASN n 1 149 GLY n 1 150 PRO n 1 151 CYS n 1 152 ILE n 1 153 CYS n 1 154 GLU n 1 155 ILE n 1 156 ASP n 1 157 CYS n 1 158 SER n 1 159 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 159 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Saxidomus purpuratus' _entity_src_nat.pdbx_ncbi_taxonomy_id 311201 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A2Z6G7U3_9BIVA _struct_ref.pdbx_db_accession A0A2Z6G7U3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLNGASIIVSLFLCFVGGAYACCSEDDCPSGWKFFGGSCYLFDEGSRGWEGSKAFCESKDASLVTVECSKEDDFIRGILS GQTAKHYYWIGARWNEEHNDYRWIDGSPFTFIGWGPGKPDNNKGCLDYLNYKEVVWQWNDHVDCENTNGPCICEIDCSD ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6A7S _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A2Z6G7U3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -20 _struct_ref_seq.pdbx_auth_seq_align_end 138 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NGA 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-galactopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6A7S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M lithium sulfate, 0.1 M Tris-HCl (pH8.5), 30% PEG4000, 100 mM GalNAc, 10 mM CaCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6A7S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16065 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.9 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 39.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.462 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 39.559 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6A7S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 30.72 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15278 _refine.ls_number_reflns_R_free 765 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.76 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.18079 _refine.ls_R_factor_R_free 0.20745 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.17943 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.125 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.460 _refine.overall_SU_ML 0.092 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1106 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 1222 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 30.72 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.014 1172 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.018 928 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.784 1.672 1592 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.175 1.692 2187 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 9.280 5.000 137 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 37.188 24.030 67 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.322 15.000 171 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 19.149 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.128 0.200 141 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 1330 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 251 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 3.687 3.855 552 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.670 3.846 550 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.696 5.759 687 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.693 5.769 688 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.348 4.233 620 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.208 4.201 616 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.886 6.150 900 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.390 44.694 1401 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.383 44.602 1394 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.001 _refine_ls_shell.d_res_low 2.053 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_R_work 1087 _refine_ls_shell.percent_reflns_obs 98.10 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.260 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6A7S _struct.title 'Ca2+-independent C-type lectin SPL-2 from Saxidomus purpuratus' _struct.pdbx_descriptor 'N-acetylglucosamine-specific lectin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6A7S _struct_keywords.text 'SPL-2, lectin, bivalve, Saxidomus purpuratus, C-type, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 24 ? CYS A 28 ? SER B 3 CYS B 7 5 ? 5 HELX_P HELX_P2 AA2 GLY A 48 ? LYS A 59 ? GLY B 27 LYS B 38 1 ? 12 HELX_P HELX_P3 AA3 CYS A 68 ? SER A 80 ? CYS B 47 SER B 59 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 68 SG ? ? B CYS 1 B CYS 47 5_555 ? ? ? ? ? ? ? 2.215 ? ? disulf2 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 157 SG ? ? B CYS 2 B CYS 136 1_555 ? ? ? ? ? ? ? 2.135 ? ? disulf3 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 39 SG ? ? B CYS 7 B CYS 18 1_555 ? ? ? ? ? ? ? 2.005 ? ? disulf4 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 153 SG ? ? B CYS 35 B CYS 132 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf5 disulf ? ? A CYS 125 SG ? ? ? 1_555 A CYS 144 SG ? ? B CYS 104 B CYS 123 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc1 metalc ? ? A THR 65 O ? ? ? 1_555 D CA . CA ? ? B THR 44 B CA 203 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc2 metalc ? ? A GLU 67 OE1 ? ? ? 1_555 D CA . CA ? ? B GLU 46 B CA 203 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc3 metalc ? ? A GLU 71 OE1 ? ? ? 1_555 D CA . CA ? ? B GLU 50 B CA 203 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc4 metalc ? ? A GLU 71 OE2 ? ? ? 1_555 D CA . CA ? ? B GLU 50 B CA 203 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc5 metalc ? ? A GLU 154 OE1 ? ? ? 1_555 D CA . CA ? ? B GLU 133 B CA 203 1_555 ? ? ? ? ? ? ? 2.730 ? ? metalc6 metalc ? ? A GLU 154 OE2 ? ? ? 1_555 D CA . CA ? ? B GLU 133 B CA 203 1_555 ? ? ? ? ? ? ? 2.439 ? ? metalc7 metalc ? ? C TRS . O3 ? ? ? 1_555 D CA . CA ? ? B TRS 202 B CA 203 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? B CA 203 B HOH 376 1_555 ? ? ? ? ? ? ? 2.483 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 118 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 97 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 119 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 98 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 33 ? PHE A 35 ? LYS B 12 PHE B 14 AA1 2 SER A 38 ? ARG A 47 ? SER B 17 ARG B 26 AA1 3 GLY A 149 ? ILE A 155 ? GLY B 128 ILE B 134 AA1 4 SER A 62 ? LEU A 63 ? SER B 41 LEU B 42 AA2 1 ASP A 100 ? TRP A 103 ? ASP B 79 TRP B 82 AA2 2 TYR A 87 ? ASN A 95 ? TYR B 66 ASN B 74 AA2 3 CYS A 125 ? TYR A 131 ? CYS B 104 TYR B 110 AA2 4 VAL A 134 ? HIS A 141 ? VAL B 113 HIS B 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 33 ? N LYS B 12 O TYR A 40 ? O TYR B 19 AA1 2 3 N ARG A 47 ? N ARG B 26 O GLY A 149 ? O GLY B 128 AA1 3 4 O GLU A 154 ? O GLU B 133 N SER A 62 ? N SER B 41 AA2 1 2 O ASP A 100 ? O ASP B 79 N ASN A 95 ? N ASN B 74 AA2 2 3 N ALA A 92 ? N ALA B 71 O LEU A 126 ? O LEU B 105 AA2 3 4 N CYS A 125 ? N CYS B 104 O HIS A 141 ? O HIS B 120 # _atom_sites.entry_id 6A7S _atom_sites.fract_transf_matrix[1][1] 0.010961 _atom_sites.fract_transf_matrix[1][2] 0.006328 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012656 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020496 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -20 ? ? ? B . n A 1 2 LEU 2 -19 ? ? ? B . n A 1 3 ASN 3 -18 ? ? ? B . n A 1 4 GLY 4 -17 ? ? ? B . n A 1 5 ALA 5 -16 ? ? ? B . n A 1 6 SER 6 -15 ? ? ? B . n A 1 7 ILE 7 -14 ? ? ? B . n A 1 8 ILE 8 -13 ? ? ? B . n A 1 9 VAL 9 -12 ? ? ? B . n A 1 10 SER 10 -11 ? ? ? B . n A 1 11 LEU 11 -10 ? ? ? B . n A 1 12 PHE 12 -9 ? ? ? B . n A 1 13 LEU 13 -8 ? ? ? B . n A 1 14 CYS 14 -7 ? ? ? B . n A 1 15 PHE 15 -6 ? ? ? B . n A 1 16 VAL 16 -5 ? ? ? B . n A 1 17 GLY 17 -4 ? ? ? B . n A 1 18 GLY 18 -3 ? ? ? B . n A 1 19 ALA 19 -2 ? ? ? B . n A 1 20 TYR 20 -1 ? ? ? B . n A 1 21 ALA 21 0 ? ? ? B . n A 1 22 CYS 22 1 1 CYS CYS B . n A 1 23 CYS 23 2 2 CYS CYS B . n A 1 24 SER 24 3 3 SER SER B . n A 1 25 GLU 25 4 4 GLU GLU B . n A 1 26 ASP 26 5 5 ASP ASP B . n A 1 27 ASP 27 6 6 ASP ASP B . n A 1 28 CYS 28 7 7 CYS CYS B . n A 1 29 PRO 29 8 8 PRO PRO B . n A 1 30 SER 30 9 9 SER SER B . n A 1 31 GLY 31 10 10 GLY GLY B . n A 1 32 TRP 32 11 11 TRP TRP B . n A 1 33 LYS 33 12 12 LYS LYS B . n A 1 34 PHE 34 13 13 PHE PHE B . n A 1 35 PHE 35 14 14 PHE PHE B . n A 1 36 GLY 36 15 15 GLY GLY B . n A 1 37 GLY 37 16 16 GLY GLY B . n A 1 38 SER 38 17 17 SER SER B . n A 1 39 CYS 39 18 18 CYS CYS B . n A 1 40 TYR 40 19 19 TYR TYR B . n A 1 41 LEU 41 20 20 LEU LEU B . n A 1 42 PHE 42 21 21 PHE PHE B . n A 1 43 ASP 43 22 22 ASP ASP B . n A 1 44 GLU 44 23 23 GLU GLU B . n A 1 45 GLY 45 24 24 GLY GLY B . n A 1 46 SER 46 25 25 SER SER B . n A 1 47 ARG 47 26 26 ARG ARG B . n A 1 48 GLY 48 27 27 GLY GLY B . n A 1 49 TRP 49 28 28 TRP TRP B . n A 1 50 GLU 50 29 29 GLU GLU B . n A 1 51 GLY 51 30 30 GLY GLY B . n A 1 52 SER 52 31 31 SER SER B . n A 1 53 LYS 53 32 32 LYS LYS B . n A 1 54 ALA 54 33 33 ALA ALA B . n A 1 55 PHE 55 34 34 PHE PHE B . n A 1 56 CYS 56 35 35 CYS CYS B . n A 1 57 GLU 57 36 36 GLU GLU B . n A 1 58 SER 58 37 37 SER SER B . n A 1 59 LYS 59 38 38 LYS LYS B . n A 1 60 ASP 60 39 39 ASP ASP B . n A 1 61 ALA 61 40 40 ALA ALA B . n A 1 62 SER 62 41 41 SER SER B . n A 1 63 LEU 63 42 42 LEU LEU B . n A 1 64 VAL 64 43 43 VAL VAL B . n A 1 65 THR 65 44 44 THR THR B . n A 1 66 VAL 66 45 45 VAL VAL B . n A 1 67 GLU 67 46 46 GLU GLU B . n A 1 68 CYS 68 47 47 CYS CYS B . n A 1 69 SER 69 48 48 SER SER B . n A 1 70 LYS 70 49 49 LYS LYS B . n A 1 71 GLU 71 50 50 GLU GLU B . n A 1 72 ASP 72 51 51 ASP ASP B . n A 1 73 ASP 73 52 52 ASP ASP B . n A 1 74 PHE 74 53 53 PHE PHE B . n A 1 75 ILE 75 54 54 ILE ILE B . n A 1 76 ARG 76 55 55 ARG ARG B . n A 1 77 GLY 77 56 56 GLY GLY B . n A 1 78 ILE 78 57 57 ILE ILE B . n A 1 79 LEU 79 58 58 LEU LEU B . n A 1 80 SER 80 59 59 SER SER B . n A 1 81 GLY 81 60 60 GLY GLY B . n A 1 82 GLN 82 61 61 GLN GLN B . n A 1 83 THR 83 62 62 THR THR B . n A 1 84 ALA 84 63 63 ALA ALA B . n A 1 85 LYS 85 64 64 LYS LYS B . n A 1 86 HIS 86 65 65 HIS HIS B . n A 1 87 TYR 87 66 66 TYR TYR B . n A 1 88 TYR 88 67 67 TYR TYR B . n A 1 89 TRP 89 68 68 TRP TRP B . n A 1 90 ILE 90 69 69 ILE ILE B . n A 1 91 GLY 91 70 70 GLY GLY B . n A 1 92 ALA 92 71 71 ALA ALA B . n A 1 93 ARG 93 72 72 ARG ARG B . n A 1 94 TRP 94 73 73 TRP TRP B . n A 1 95 ASN 95 74 74 ASN ASN B . n A 1 96 GLU 96 75 75 GLU GLU B . n A 1 97 GLU 97 76 76 GLU GLU B . n A 1 98 HIS 98 77 77 HIS HIS B . n A 1 99 ASN 99 78 78 ASN ASN B . n A 1 100 ASP 100 79 79 ASP ASP B . n A 1 101 TYR 101 80 80 TYR TYR B . n A 1 102 ARG 102 81 81 ARG ARG B . n A 1 103 TRP 103 82 82 TRP TRP B . n A 1 104 ILE 104 83 83 ILE ILE B . n A 1 105 ASP 105 84 84 ASP ASP B . n A 1 106 GLY 106 85 85 GLY GLY B . n A 1 107 SER 107 86 86 SER SER B . n A 1 108 PRO 108 87 87 PRO PRO B . n A 1 109 PHE 109 88 88 PHE PHE B . n A 1 110 THR 110 89 89 THR THR B . n A 1 111 PHE 111 90 90 PHE PHE B . n A 1 112 ILE 112 91 91 ILE ILE B . n A 1 113 GLY 113 92 92 GLY GLY B . n A 1 114 TRP 114 93 93 TRP TRP B . n A 1 115 GLY 115 94 94 GLY GLY B . n A 1 116 PRO 116 95 95 PRO PRO B . n A 1 117 GLY 117 96 96 GLY GLY B . n A 1 118 LYS 118 97 97 LYS LYS B . n A 1 119 PRO 119 98 98 PRO PRO B . n A 1 120 ASP 120 99 99 ASP ASP B . n A 1 121 ASN 121 100 100 ASN ASN B . n A 1 122 ASN 122 101 101 ASN ASN B . n A 1 123 LYS 123 102 102 LYS LYS B . n A 1 124 GLY 124 103 103 GLY GLY B . n A 1 125 CYS 125 104 104 CYS CYS B . n A 1 126 LEU 126 105 105 LEU LEU B . n A 1 127 ASP 127 106 106 ASP ASP B . n A 1 128 TYR 128 107 107 TYR TYR B . n A 1 129 LEU 129 108 108 LEU LEU B . n A 1 130 ASN 130 109 109 ASN ASN B . n A 1 131 TYR 131 110 110 TYR TYR B . n A 1 132 LYS 132 111 111 LYS LYS B . n A 1 133 GLU 133 112 112 GLU GLU B . n A 1 134 VAL 134 113 113 VAL VAL B . n A 1 135 VAL 135 114 114 VAL VAL B . n A 1 136 TRP 136 115 115 TRP TRP B . n A 1 137 GLN 137 116 116 GLN GLN B . n A 1 138 TRP 138 117 117 TRP TRP B . n A 1 139 ASN 139 118 118 ASN ASN B . n A 1 140 ASP 140 119 119 ASP ASP B . n A 1 141 HIS 141 120 120 HIS HIS B . n A 1 142 VAL 142 121 121 VAL VAL B . n A 1 143 ASP 143 122 122 ASP ASP B . n A 1 144 CYS 144 123 123 CYS CYS B . n A 1 145 GLU 145 124 124 GLU GLU B . n A 1 146 ASN 146 125 125 ASN ASN B . n A 1 147 THR 147 126 126 THR THR B . n A 1 148 ASN 148 127 127 ASN ASN B . n A 1 149 GLY 149 128 128 GLY GLY B . n A 1 150 PRO 150 129 129 PRO PRO B . n A 1 151 CYS 151 130 130 CYS CYS B . n A 1 152 ILE 152 131 131 ILE ILE B . n A 1 153 CYS 153 132 132 CYS CYS B . n A 1 154 GLU 154 133 133 GLU GLU B . n A 1 155 ILE 155 134 134 ILE ILE B . n A 1 156 ASP 156 135 135 ASP ASP B . n A 1 157 CYS 157 136 136 CYS CYS B . n A 1 158 SER 158 137 137 SER SER B . n A 1 159 ASP 159 138 138 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NGA 1 201 1002 NGA NGA B . C 3 TRS 1 202 1001 TRS TRS B . D 4 CA 1 203 1003 CA CA B . E 5 SO4 1 204 1 SO4 SO4 B . F 6 HOH 1 301 1 HOH HOH B . F 6 HOH 2 302 97 HOH HOH B . F 6 HOH 3 303 94 HOH HOH B . F 6 HOH 4 304 56 HOH HOH B . F 6 HOH 5 305 11 HOH HOH B . F 6 HOH 6 306 96 HOH HOH B . F 6 HOH 7 307 28 HOH HOH B . F 6 HOH 8 308 14 HOH HOH B . F 6 HOH 9 309 37 HOH HOH B . F 6 HOH 10 310 45 HOH HOH B . F 6 HOH 11 311 84 HOH HOH B . F 6 HOH 12 312 16 HOH HOH B . F 6 HOH 13 313 7 HOH HOH B . F 6 HOH 14 314 25 HOH HOH B . F 6 HOH 15 315 41 HOH HOH B . F 6 HOH 16 316 77 HOH HOH B . F 6 HOH 17 317 67 HOH HOH B . F 6 HOH 18 318 8 HOH HOH B . F 6 HOH 19 319 79 HOH HOH B . F 6 HOH 20 320 2 HOH HOH B . F 6 HOH 21 321 72 HOH HOH B . F 6 HOH 22 322 23 HOH HOH B . F 6 HOH 23 323 2 HOH HOH B . F 6 HOH 24 324 60 HOH HOH B . F 6 HOH 25 325 55 HOH HOH B . F 6 HOH 26 326 101 HOH HOH B . F 6 HOH 27 327 76 HOH HOH B . F 6 HOH 28 328 78 HOH HOH B . F 6 HOH 29 329 82 HOH HOH B . F 6 HOH 30 330 20 HOH HOH B . F 6 HOH 31 331 12 HOH HOH B . F 6 HOH 32 332 50 HOH HOH B . F 6 HOH 33 333 48 HOH HOH B . F 6 HOH 34 334 4 HOH HOH B . F 6 HOH 35 335 21 HOH HOH B . F 6 HOH 36 336 5 HOH HOH B . F 6 HOH 37 337 29 HOH HOH B . F 6 HOH 38 338 6 HOH HOH B . F 6 HOH 39 339 68 HOH HOH B . F 6 HOH 40 340 31 HOH HOH B . F 6 HOH 41 341 52 HOH HOH B . F 6 HOH 42 342 64 HOH HOH B . F 6 HOH 43 343 38 HOH HOH B . F 6 HOH 44 344 18 HOH HOH B . F 6 HOH 45 345 30 HOH HOH B . F 6 HOH 46 346 93 HOH HOH B . F 6 HOH 47 347 11 HOH HOH B . F 6 HOH 48 348 95 HOH HOH B . F 6 HOH 49 349 65 HOH HOH B . F 6 HOH 50 350 69 HOH HOH B . F 6 HOH 51 351 54 HOH HOH B . F 6 HOH 52 352 27 HOH HOH B . F 6 HOH 53 353 39 HOH HOH B . F 6 HOH 54 354 10 HOH HOH B . F 6 HOH 55 355 57 HOH HOH B . F 6 HOH 56 356 40 HOH HOH B . F 6 HOH 57 357 24 HOH HOH B . F 6 HOH 58 358 47 HOH HOH B . F 6 HOH 59 359 42 HOH HOH B . F 6 HOH 60 360 33 HOH HOH B . F 6 HOH 61 361 23 HOH HOH B . F 6 HOH 62 362 61 HOH HOH B . F 6 HOH 63 363 53 HOH HOH B . F 6 HOH 64 364 1 HOH HOH B . F 6 HOH 65 365 9 HOH HOH B . F 6 HOH 66 366 26 HOH HOH B . F 6 HOH 67 367 19 HOH HOH B . F 6 HOH 68 368 89 HOH HOH B . F 6 HOH 69 369 34 HOH HOH B . F 6 HOH 70 370 74 HOH HOH B . F 6 HOH 71 371 36 HOH HOH B . F 6 HOH 72 372 46 HOH HOH B . F 6 HOH 73 373 75 HOH HOH B . F 6 HOH 74 374 13 HOH HOH B . F 6 HOH 75 375 71 HOH HOH B . F 6 HOH 76 376 49 HOH HOH B . F 6 HOH 77 377 32 HOH HOH B . F 6 HOH 78 378 15 HOH HOH B . F 6 HOH 79 379 88 HOH HOH B . F 6 HOH 80 380 3 HOH HOH B . F 6 HOH 81 381 100 HOH HOH B . F 6 HOH 82 382 22 HOH HOH B . F 6 HOH 83 383 92 HOH HOH B . F 6 HOH 84 384 35 HOH HOH B . F 6 HOH 85 385 58 HOH HOH B . F 6 HOH 86 386 62 HOH HOH B . F 6 HOH 87 387 63 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2900 ? 1 MORE -34 ? 1 'SSA (A^2)' 12840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 32.5273333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 361 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 83.9 ? 2 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 74.8 ? 3 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 72.1 ? 4 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 85.3 ? 5 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 120.8 ? 6 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 48.9 ? 7 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 78.8 ? 8 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 135.2 ? 9 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 139.0 ? 10 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 98.7 ? 11 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 123.7 ? 12 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 148.9 ? 13 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 125.1 ? 14 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 79.3 ? 15 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 51.3 ? 16 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O3 ? C TRS . ? B TRS 202 ? 1_555 112.3 ? 17 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O3 ? C TRS . ? B TRS 202 ? 1_555 72.3 ? 18 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O3 ? C TRS . ? B TRS 202 ? 1_555 142.7 ? 19 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O3 ? C TRS . ? B TRS 202 ? 1_555 160.1 ? 20 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O3 ? C TRS . ? B TRS 202 ? 1_555 76.7 ? 21 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O3 ? C TRS . ? B TRS 202 ? 1_555 82.9 ? 22 O ? A THR 65 ? B THR 44 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 149.7 ? 23 OE1 ? A GLU 67 ? B GLU 46 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 80.0 ? 24 OE1 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 75.9 ? 25 OE2 ? A GLU 71 ? B GLU 50 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 81.2 ? 26 OE1 ? A GLU 154 ? B GLU 133 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 130.0 ? 27 OE2 ? A GLU 154 ? B GLU 133 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 80.2 ? 28 O3 ? C TRS . ? B TRS 202 ? 1_555 CA ? D CA . ? B CA 203 ? 1_555 O ? F HOH . ? B HOH 376 ? 1_555 87.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-03-20 2 'Structure model' 1 1 2019-04-03 3 'Structure model' 1 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' entity_name_com 4 2 'Structure model' struct 5 3 'Structure model' chem_comp 6 3 'Structure model' entity 7 3 'Structure model' pdbx_chem_comp_identifier 8 3 'Structure model' pdbx_entity_nonpoly 9 3 'Structure model' struct_conn 10 3 'Structure model' struct_site 11 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct.pdbx_descriptor' 2 3 'Structure model' '_chem_comp.name' 3 3 'Structure model' '_chem_comp.type' 4 3 'Structure model' '_entity.pdbx_description' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0230 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 89 ? ? -116.05 -77.45 2 1 ASN B 100 ? ? 62.19 66.65 3 1 LYS B 111 ? ? 55.32 -120.58 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 137 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 138 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 121.26 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET -20 ? A MET 1 2 1 Y 1 B LEU -19 ? A LEU 2 3 1 Y 1 B ASN -18 ? A ASN 3 4 1 Y 1 B GLY -17 ? A GLY 4 5 1 Y 1 B ALA -16 ? A ALA 5 6 1 Y 1 B SER -15 ? A SER 6 7 1 Y 1 B ILE -14 ? A ILE 7 8 1 Y 1 B ILE -13 ? A ILE 8 9 1 Y 1 B VAL -12 ? A VAL 9 10 1 Y 1 B SER -11 ? A SER 10 11 1 Y 1 B LEU -10 ? A LEU 11 12 1 Y 1 B PHE -9 ? A PHE 12 13 1 Y 1 B LEU -8 ? A LEU 13 14 1 Y 1 B CYS -7 ? A CYS 14 15 1 Y 1 B PHE -6 ? A PHE 15 16 1 Y 1 B VAL -5 ? A VAL 16 17 1 Y 1 B GLY -4 ? A GLY 17 18 1 Y 1 B GLY -3 ? A GLY 18 19 1 Y 1 B ALA -2 ? A ALA 19 20 1 Y 1 B TYR -1 ? A TYR 20 21 1 Y 1 B ALA 0 ? A ALA 21 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science' Japan 25450133 1 'Japan Society for the Promotion of Science' Japan 17K07760 2 'Japan Society for the Promotion of Science' Japan 26450128 3 'Japan Society for the Promotion of Science' Japan 15K06977 4 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAcb NGA 'COMMON NAME' GMML 1.0 N-acetyl-b-D-galactopyranosamine NGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc NGA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-galactopyranose NGA 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 'CALCIUM ION' CA 5 'SULFATE ION' SO4 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? #