HEADER    DNA                                     05-JUL-18   6A7Y              
TITLE     SOLUTION STRUCTURE OF AN INTERMOLECULAR LEAPED V-SHAPE G-QUADRUPLEX   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA (5'-                                                   
COMPND   3 D(*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3');        
COMPND   4 CHAIN: A;                                                            
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: DNA (5'-D(*TP*GP*GP*GP*GP*A)-3');                          
COMPND   8 CHAIN: B;                                                            
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: STERKIELLA NOVA;                                
SOURCE   3 ORGANISM_TAXID: 200597;                                              
SOURCE   4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT;                              
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 32630;                                      
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: STERKIELLA NOVA;                                
SOURCE   8 ORGANISM_TAXID: 200597;                                              
SOURCE   9 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT;                              
SOURCE  10 EXPRESSION_SYSTEM_TAXID: 32630                                       
KEYWDS    G-QUADRUPLEX, V-SHAPE, DNA                                            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    C.J.WAN,N.ZHANG                                                       
REVDAT   4   15-MAY-24 6A7Y    1       REMARK                                   
REVDAT   3   14-JUN-23 6A7Y    1       REMARK                                   
REVDAT   2   10-JUL-19 6A7Y    1       JRNL   REMARK                            
REVDAT   1   12-DEC-18 6A7Y    0                                                
JRNL        AUTH   C.WAN,W.FU,H.JING,N.ZHANG                                    
JRNL        TITL   NMR SOLUTION STRUCTURE OF AN ASYMMETRIC INTERMOLECULAR       
JRNL        TITL 2 LEAPED V-SHAPE G-QUADRUPLEX: SELECTIVE RECOGNITION OF THE    
JRNL        TITL 3 D(G2NG3NG4) SEQUENCE MOTIF BY A SHORT LINEAR G-RICH DNA      
JRNL        TITL 4 PROBE.                                                       
JRNL        REF    NUCLEIC ACIDS RES.            V.  47  1544 2019              
JRNL        REFN                   ESSN 1362-4962                               
JRNL        PMID   30445650                                                     
JRNL        DOI    10.1093/NAR/GKY1167                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : AMBER                                                
REMARK   3   AUTHORS     : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG,        
REMARK   3                 DUKE, LUO, ... AND KOLLMAN                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6A7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-18.                  
REMARK 100 THE DEPOSITION ID IS D_1300008299.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 6.8                                
REMARK 210  IONIC STRENGTH                 : 100                                
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 2 MM DNA (5'                       
REMARK 210  -D(*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'), 2    
REMARK 210  MM DNA (5'-D(*TP*GP*GP*GP*GP*A)-3'), 90% H2O/10% D2O; 2 MM DNA      
REMARK 210  (5'-D(*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'),   
REMARK 210  2 MM DNA (5'-D(*TP*GP*GP*GP*GP*A)-3'), 100% D2O                     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-1H NOESY; 2D 1H-15N HSQC;    
REMARK 210                                   2D 1H-13C HSQC; 2D DQF-COSY; 2D    
REMARK 210                                   1H-13C HMBC                        
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE III                         
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : SPARKY, X-PLOR NIH, ANALYSIS,      
REMARK 210                                   TOPSPIN, NMRPIPE                   
REMARK 210   METHOD USED                   : DGSA-DISTANCE GEOMETRY SIMULATED   
REMARK 210                                   ANNEALING                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1  DG A   1   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  1  DT A   3   N3  -  C2  -  O2  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  1  DT A   3   C6  -  C5  -  C7  ANGL. DEV. =  -4.1 DEGREES          
REMARK 500  1  DT A   4   C6  -  C5  -  C7  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500  1  DT A   5   N3  -  C2  -  O2  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  1  DT A   5   C6  -  C5  -  C7  ANGL. DEV. =  -4.3 DEGREES          
REMARK 500  1  DT A   6   N3  -  C2  -  O2  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  1  DT A   6   C6  -  C5  -  C7  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  1  DG A   8   O4' -  C1' -  N9  ANGL. DEV. =   2.7 DEGREES          
REMARK 500  1  DG A  10   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  1  DT A  11   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500  1  DT A  11   N3  -  C2  -  O2  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  1  DT A  11   C6  -  C5  -  C7  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500  1  DT A  12   C6  -  C5  -  C7  ANGL. DEV. =  -4.1 DEGREES          
REMARK 500  1  DT A  13   O4' -  C1' -  N1  ANGL. DEV. =   1.8 DEGREES          
REMARK 500  1  DT A  13   C6  -  C5  -  C7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  1  DT A  14   N3  -  C2  -  O2  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  1  DT A  14   C6  -  C5  -  C7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  1  DG A  15   O4' -  C1' -  N9  ANGL. DEV. =   2.4 DEGREES          
REMARK 500  1  DG A  15   N3  -  C4  -  C5  ANGL. DEV. =  -3.3 DEGREES          
REMARK 500  1  DG A  16   O4' -  C1' -  N9  ANGL. DEV. =   2.6 DEGREES          
REMARK 500  1  DG A  16   N3  -  C4  -  C5  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  1  DG A  16   N3  -  C4  -  N9  ANGL. DEV. =   3.9 DEGREES          
REMARK 500  1  DT B  19   C6  -  C5  -  C7  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500  1  DG B  20   O4' -  C1' -  N9  ANGL. DEV. =   1.9 DEGREES          
REMARK 500  1  DG B  21   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500  1  DG B  23   O4' -  C1' -  N9  ANGL. DEV. =   2.0 DEGREES          
REMARK 500  1  DA B  24   C4  -  C5  -  C6  ANGL. DEV. =  -3.3 DEGREES          
REMARK 500  1  DA B  24   C5  -  C6  -  N1  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DA B  24   N1  -  C6  -  N6  ANGL. DEV. =  -4.6 DEGREES          
REMARK 500  2  DG A   1   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500  2  DT A   3   O4' -  C1' -  N1  ANGL. DEV. =   2.5 DEGREES          
REMARK 500  2  DT A   3   N3  -  C2  -  O2  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  2  DT A   3   C6  -  C5  -  C7  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500  2  DT A   4   N3  -  C2  -  O2  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  2  DT A   4   C6  -  C5  -  C7  ANGL. DEV. =  -4.1 DEGREES          
REMARK 500  2  DT A   5   N3  -  C2  -  O2  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  2  DT A   5   C6  -  C5  -  C7  ANGL. DEV. =  -4.1 DEGREES          
REMARK 500  2  DT A   6   O4' -  C1' -  N1  ANGL. DEV. =   1.8 DEGREES          
REMARK 500  2  DT A   6   N3  -  C2  -  O2  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  2  DT A   6   C6  -  C5  -  C7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  2  DG A   8   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  2  DG A   9   O4' -  C1' -  N9  ANGL. DEV. =   2.0 DEGREES          
REMARK 500  2  DG A  10   O4' -  C1' -  N9  ANGL. DEV. =   1.8 DEGREES          
REMARK 500  2  DT A  11   N3  -  C2  -  O2  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  2  DT A  11   C6  -  C5  -  C7  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  2  DT A  12   C6  -  C5  -  C7  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500  2  DT A  13   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500  2  DT A  13   N3  -  C2  -  O2  ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  2  DT A  13   C6  -  C5  -  C7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     330 ANGLE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 36199   RELATED DB: BMRB                                 
REMARK 900 SOLUTION STRUCTURE OF AN INTERMOLECULAR LEAPED V-SHAPE G-QUADRUPLEX  
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 CHAIN B HAS A T-TO-A MUTATED SEQUENCE. THE ORIGINAL SEQUENCE IS      
REMARK 999 D(TGGGGT).                                                           
DBREF  6A7Y A    1    18  PDB    6A7Y     6A7Y             1     18             
DBREF  6A7Y B   19    24  PDB    6A7Y     6A7Y            19     24             
SEQRES   1 A   18   DG  DG  DT  DT  DT  DT  DG  DG  DG  DG  DT  DT  DT          
SEQRES   2 A   18   DT  DG  DG  DG  DG                                          
SEQRES   1 B    6   DT  DG  DG  DG  DG  DA                                      
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1