HEADER HYDROLASE 09-JUL-18 6A8O TITLE CRYSTAL STRUCTURES OF THE SERINE PROTEASE DOMAIN OF MURINE PLASMA TITLE 2 KALLIKREIN WITH PEPTIDE INHIBITOR MUPAIN-1-16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA KALLIKREIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLETCHER FACTOR,KININOGENIN,PLASMA PREKALLIKREIN; COMPND 5 EC: 3.4.21.34; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE INHIBITOR,; COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 VARIANT: C122S; SOURCE 6 GENE: KLKB1, KLK3, PK; SOURCE 7 EXPRESSION_SYSTEM: PICHIA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4919; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHEMIOPSIS; SOURCE 11 ORGANISM_TAXID: 448014; SOURCE 12 EXPRESSION_SYSTEM: SYNTHESIOMYIA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 367285 KEYWDS SERINE PROTEASE, MURINE PLASMA KALLIKREIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.XU,L.JIANG,M.HUANG REVDAT 4 22-NOV-23 6A8O 1 HETSYN REVDAT 3 29-JUL-20 6A8O 1 COMPND REMARK HETNAM SITE REVDAT 2 29-JAN-20 6A8O 1 JRNL REVDAT 1 10-JUL-19 6A8O 0 JRNL AUTH M.XU,Y.CHEN,P.XU,P.A.ANDREASEN,L.JIANG,J.LI,M.HUANG JRNL TITL CRYSTAL STRUCTURE OF PLASMA KALLIKREIN REVEALS THE UNUSUAL JRNL TITL 2 FLEXIBILITY OF THE S1 POCKET TRIGGERED BY GLU217. JRNL REF FEBS LETT. V. 592 2658 2018 JRNL REFN ISSN 0014-5793 JRNL PMID 30019481 JRNL DOI 10.1002/1873-3468.13191 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1142 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.00000 REMARK 3 B22 (A**2) : 2.53000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.536 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.420 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.344 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.263 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3915 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3580 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5310 ; 1.642 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8361 ; 1.207 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 8.500 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.563 ;24.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;19.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4227 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 757 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1909 ; 6.318 ; 7.045 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1908 ; 6.302 ; 7.040 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2362 ; 9.554 ;10.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2363 ; 9.555 ;10.554 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2006 ; 7.175 ; 7.816 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2006 ; 7.173 ; 7.816 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2949 ;10.921 ;11.407 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4326 ;14.357 ;82.035 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4327 ;14.355 ;82.065 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6A8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16315 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 52.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.73 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2ANY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.63000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.63000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 35.63000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 41.22500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 244 REMARK 465 SER A 245 REMARK 465 ASP A 246 REMARK 465 VAL A 247 REMARK 465 ARG A 248 REMARK 465 ALA A 249 REMARK 465 LEU A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 ALA A 255 REMARK 465 SER B 244 REMARK 465 SER B 245 REMARK 465 ASP B 246 REMARK 465 VAL B 247 REMARK 465 ARG B 248 REMARK 465 ALA B 249 REMARK 465 LEU B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 SER B 253 REMARK 465 SER B 254 REMARK 465 ALA B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER P 5 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 42 SG CYS B 58 1.06 REMARK 500 SG CYS A 42 SG CYS A 58 1.19 REMARK 500 ND2 ASN A 113 O5 MAN A 301 1.71 REMARK 500 ND2 ASN B 21 C1 MAN B 301 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA P 6 C ALA P 6 O -0.276 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER P 5 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 ALA P 6 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 ALA P 6 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 22 178.50 -59.84 REMARK 500 LEU A 24 109.06 -56.94 REMARK 500 LEU A 37 -82.87 -108.79 REMARK 500 SER A 38A 173.42 -58.66 REMARK 500 GLN A 109 -76.88 -64.56 REMARK 500 PRO A 120 -174.52 -63.58 REMARK 500 ASN A 130 -5.33 85.94 REMARK 500 ASN A 135 60.38 -117.20 REMARK 500 GLU A 146 144.19 -39.78 REMARK 500 ILE A 160 134.80 -173.42 REMARK 500 GLU A 166 -19.26 96.55 REMARK 500 CYS A 191 -169.39 -103.80 REMARK 500 HIS A 203 -92.45 -127.87 REMARK 500 SER A 214 -86.79 -115.10 REMARK 500 LEU B 24 120.94 -35.94 REMARK 500 LEU B 37 -112.85 -114.88 REMARK 500 ASP B 60 -71.70 -47.74 REMARK 500 THR B 77 -161.28 -109.10 REMARK 500 GLU B 186 -104.26 -103.24 REMARK 500 SER B 195 128.33 -35.27 REMARK 500 SER B 214 -71.54 -126.07 REMARK 500 GLN B 224 79.45 -112.02 REMARK 500 PRO P 2 -166.49 -55.71 REMARK 500 ALA P 6 3.82 -67.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN B 301 DBREF 6A8O A 16 255 UNP P26262 KLKB1_MOUSE 391 638 DBREF 6A8O B 16 255 UNP P26262 KLKB1_MOUSE 391 638 DBREF 6A8O P 1 6 PDB 6A8O 6A8O 1 6 DBREF 6A8O P 7 10 PDB 6A8O 6A8O 7 10 SEQADV 6A8O SER A 122 UNP P26262 CYS 503 ENGINEERED MUTATION SEQADV 6A8O SER B 122 UNP P26262 CYS 503 ENGINEERED MUTATION SEQRES 1 A 248 ILE VAL GLY GLY THR ASN ALA SER LEU GLY GLU TRP PRO SEQRES 2 A 248 TRP GLN VAL SER LEU GLN VAL LYS LEU VAL SER GLN THR SEQRES 3 A 248 HIS LEU CYS GLY GLY SER ILE ILE GLY ARG GLN TRP VAL SEQRES 4 A 248 LEU THR ALA ALA HIS CYS PHE ASP GLY ILE PRO TYR PRO SEQRES 5 A 248 ASP VAL TRP ARG ILE TYR GLY GLY ILE LEU SER LEU SER SEQRES 6 A 248 GLU ILE THR LYS GLU THR PRO SER SER ARG ILE LYS GLU SEQRES 7 A 248 LEU ILE ILE HIS GLN GLU TYR LYS VAL SER GLU GLY ASN SEQRES 8 A 248 TYR ASP ILE ALA LEU ILE LYS LEU GLN THR PRO LEU ASN SEQRES 9 A 248 TYR THR GLU PHE GLN LYS PRO ILE SER LEU PRO SER LYS SEQRES 10 A 248 ALA ASP THR ASN THR ILE TYR THR ASN CYS TRP VAL THR SEQRES 11 A 248 GLY TRP GLY TYR THR LYS GLU GLN GLY GLU THR GLN ASN SEQRES 12 A 248 ILE LEU GLN LYS ALA THR ILE PRO LEU VAL PRO ASN GLU SEQRES 13 A 248 GLU CYS GLN LYS LYS TYR ARG ASP TYR VAL ILE ASN LYS SEQRES 14 A 248 GLN MET ILE CYS ALA GLY TYR LYS GLU GLY GLY THR ASP SEQRES 15 A 248 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU VAL CYS LYS SEQRES 16 A 248 HIS SER GLY ARG TRP GLN LEU VAL GLY ILE THR SER TRP SEQRES 17 A 248 GLY GLU GLY CYS ALA ARG LYS ASP GLN PRO GLY VAL TYR SEQRES 18 A 248 THR LYS VAL SER GLU TYR MET ASP TRP ILE LEU GLU LYS SEQRES 19 A 248 THR GLN SER SER ASP VAL ARG ALA LEU GLU THR SER SER SEQRES 20 A 248 ALA SEQRES 1 B 248 ILE VAL GLY GLY THR ASN ALA SER LEU GLY GLU TRP PRO SEQRES 2 B 248 TRP GLN VAL SER LEU GLN VAL LYS LEU VAL SER GLN THR SEQRES 3 B 248 HIS LEU CYS GLY GLY SER ILE ILE GLY ARG GLN TRP VAL SEQRES 4 B 248 LEU THR ALA ALA HIS CYS PHE ASP GLY ILE PRO TYR PRO SEQRES 5 B 248 ASP VAL TRP ARG ILE TYR GLY GLY ILE LEU SER LEU SER SEQRES 6 B 248 GLU ILE THR LYS GLU THR PRO SER SER ARG ILE LYS GLU SEQRES 7 B 248 LEU ILE ILE HIS GLN GLU TYR LYS VAL SER GLU GLY ASN SEQRES 8 B 248 TYR ASP ILE ALA LEU ILE LYS LEU GLN THR PRO LEU ASN SEQRES 9 B 248 TYR THR GLU PHE GLN LYS PRO ILE SER LEU PRO SER LYS SEQRES 10 B 248 ALA ASP THR ASN THR ILE TYR THR ASN CYS TRP VAL THR SEQRES 11 B 248 GLY TRP GLY TYR THR LYS GLU GLN GLY GLU THR GLN ASN SEQRES 12 B 248 ILE LEU GLN LYS ALA THR ILE PRO LEU VAL PRO ASN GLU SEQRES 13 B 248 GLU CYS GLN LYS LYS TYR ARG ASP TYR VAL ILE ASN LYS SEQRES 14 B 248 GLN MET ILE CYS ALA GLY TYR LYS GLU GLY GLY THR ASP SEQRES 15 B 248 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU VAL CYS LYS SEQRES 16 B 248 HIS SER GLY ARG TRP GLN LEU VAL GLY ILE THR SER TRP SEQRES 17 B 248 GLY GLU GLY CYS ALA ARG LYS ASP GLN PRO GLY VAL TYR SEQRES 18 B 248 THR LYS VAL SER GLU TYR MET ASP TRP ILE LEU GLU LYS SEQRES 19 B 248 THR GLN SER SER ASP VAL ARG ALA LEU GLU THR SER SER SEQRES 20 B 248 ALA SEQRES 1 P 10 CYS PRO ALA TYR SER ALA TYR LEU ASP CYS HET MAN A 301 11 HET MAN B 301 11 HET MRZ P 101 9 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MRZ PIPERIDINE-1-CARBOXIMIDAMIDE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 MAN 2(C6 H12 O6) FORMUL 6 MRZ C6 H13 N3 HELIX 1 AA1 ALA A 55 ASP A 60 5 6 HELIX 2 AA2 TYR A 61 ASP A 65B 5 3 HELIX 3 AA3 SER A 125 THR A 129 5 5 HELIX 4 AA4 GLU A 167 TYR A 172 1 6 HELIX 5 AA5 TYR A 234 THR A 242 1 9 HELIX 6 AA6 ALA B 56 ASP B 60 5 5 HELIX 7 AA7 SER B 72 ILE B 76 5 5 HELIX 8 AA8 SER B 125 THR B 129 5 5 HELIX 9 AA9 PRO B 164 LYS B 170 1 7 HELIX 10 AB1 TYR B 234 GLN B 243 1 10 SHEET 1 AA1 8 THR A 20 ASN A 21 0 SHEET 2 AA1 8 GLN A 156 THR A 159 -1 O LYS A 157 N THR A 20 SHEET 3 AA1 8 CYS A 136 GLY A 140 -1 N VAL A 138 O ALA A 158 SHEET 4 AA1 8 PRO A 198 CYS A 201 -1 O VAL A 200 N TRP A 137 SHEET 5 AA1 8 LEU A 209 TRP A 215 -1 O GLY A 211 N LEU A 199 SHEET 6 AA1 8 GLY A 226 LYS A 230 -1 O THR A 229 N ILE A 212 SHEET 7 AA1 8 MET A 180 ALA A 183 -1 N ILE A 181 O TYR A 228 SHEET 8 AA1 8 LEU A 162 VAL A 163 -1 N VAL A 163 O CYS A 182 SHEET 1 AA2 7 GLN A 30 LYS A 36 0 SHEET 2 AA2 7 GLN A 38B ILE A 46 -1 O LEU A 41 N LEU A 33 SHEET 3 AA2 7 TRP A 51 THR A 54 -1 O LEU A 53 N SER A 45 SHEET 4 AA2 7 ALA A 104 LEU A 108 -1 O ILE A 106 N VAL A 52 SHEET 5 AA2 7 SER A 83 ILE A 90 -1 N GLU A 87 O LYS A 107 SHEET 6 AA2 7 TRP A 65D GLY A 68 -1 N ILE A 66 O SER A 83 SHEET 7 AA2 7 GLN A 30 LYS A 36 -1 N GLN A 34 O ARG A 65E SHEET 1 AA3 8 THR B 20 ASN B 21 0 SHEET 2 AA3 8 GLN B 156 THR B 159 -1 O LYS B 157 N THR B 20 SHEET 3 AA3 8 CYS B 136 GLY B 140 -1 N VAL B 138 O ALA B 158 SHEET 4 AA3 8 PRO B 198 LYS B 202 -1 O VAL B 200 N TRP B 137 SHEET 5 AA3 8 TRP B 208C TRP B 215 -1 O VAL B 210 N LEU B 199 SHEET 6 AA3 8 GLY B 226 LYS B 230 -1 O VAL B 227 N TRP B 215 SHEET 7 AA3 8 MET B 180 ALA B 183 -1 N ILE B 181 O TYR B 228 SHEET 8 AA3 8 LEU B 162 VAL B 163 -1 N VAL B 163 O CYS B 182 SHEET 1 AA4 6 TRP B 65D TYR B 67 0 SHEET 2 AA4 6 GLN B 30 LYS B 36 -1 N GLN B 34 O ARG B 65E SHEET 3 AA4 6 GLN B 38B GLY B 48 -1 O CYS B 42 N LEU B 33 SHEET 4 AA4 6 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 5 AA4 6 ALA B 104 LEU B 108 -1 O ALA B 104 N THR B 54 SHEET 6 AA4 6 ILE B 85 ILE B 90 -1 N ILE B 89 O LEU B 105 SSBOND 1 CYS A 136 CYS A 201 1555 1555 2.04 SSBOND 2 CYS A 168 CYS A 182 1555 1555 2.01 SSBOND 3 CYS A 191 CYS A 220 1555 1555 1.83 SSBOND 4 CYS B 136 CYS B 201 1555 1555 2.09 SSBOND 5 CYS B 168 CYS B 182 1555 1555 2.07 SSBOND 6 CYS B 191 CYS B 220 1555 1555 1.84 SSBOND 7 CYS P 1 CYS P 10 1555 1555 2.02 LINK ND2 ASN A 113 C1 MAN A 301 1555 1555 1.27 LINK CB ALA P 6 C1 MRZ P 101 1555 1555 1.53 CRYST1 71.260 82.450 105.320 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009495 0.00000