HEADER LIPID TRANSPORT 13-JUL-18 6A9E TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF ATG2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOLYSIN,AUTOPHAGY-RELATED PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIS PROTEIN,LYSOZYME,MURAMIDASE,MEIOTICALLY UP-REGULATED COMPND 5 GENE 36 PROTEIN; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE DELETED REGIONS IN OUR STRUCTURE WERE DUE TO COMPND 10 ELECTRON DENSITY DISORDER. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB59, SCHIZOSACCHAROMYCES SOURCE 3 POMBE (STRAIN 972 / ATCC 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 697290, 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: E, RB59_126, ATG2, MUG36, SPBC31E1.01C, SPBC660.18C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.OSAWA,N.N.NODA REVDAT 4 17-APR-19 6A9E 1 JRNL REVDAT 3 10-APR-19 6A9E 1 JRNL REVDAT 2 27-MAR-19 6A9E 1 JRNL REVDAT 1 20-MAR-19 6A9E 0 JRNL AUTH T.OSAWA,T.KOTANI,T.KAWAOKA,E.HIRATA,K.SUZUKI,H.NAKATOGAWA, JRNL AUTH 2 Y.OHSUMI,N.N.NODA JRNL TITL ATG2 MEDIATES DIRECT LIPID TRANSFER BETWEEN MEMBRANES FOR JRNL TITL 2 AUTOPHAGOSOME FORMATION. JRNL REF NAT. STRUCT. MOL. BIOL. V. 26 281 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 30911189 JRNL DOI 10.1038/S41594-019-0203-4 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.650 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3490 - 6.9211 0.93 2716 177 0.2199 0.2737 REMARK 3 2 6.9211 - 5.5032 0.96 2852 112 0.2511 0.2409 REMARK 3 3 5.5032 - 4.8103 0.96 2731 128 0.2079 0.2911 REMARK 3 4 4.8103 - 4.3718 0.95 2810 146 0.1880 0.1863 REMARK 3 5 4.3718 - 4.0592 0.95 2791 146 0.2122 0.2589 REMARK 3 6 4.0592 - 3.8203 0.97 2810 94 0.2173 0.2687 REMARK 3 7 3.8203 - 3.6292 0.94 2752 174 0.2409 0.3107 REMARK 3 8 3.6292 - 3.4715 0.95 2734 144 0.2268 0.2894 REMARK 3 9 3.4715 - 3.3380 0.97 2837 100 0.2363 0.2918 REMARK 3 10 3.3380 - 3.2229 0.93 2728 204 0.2605 0.2775 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5075 REMARK 3 ANGLE : 0.644 6882 REMARK 3 CHIRALITY : 0.025 855 REMARK 3 PLANARITY : 0.003 872 REMARK 3 DIHEDRAL : 11.652 1776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 6A9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9692 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29622 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, AMMONIUM SULFATE, BIS-TRIS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.34750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 220 REMARK 465 PRO A 221 REMARK 465 MSE A 222 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 ASP A 264 REMARK 465 GLU A 265 REMARK 465 SER A 266 REMARK 465 LEU A 267 REMARK 465 SER A 268 REMARK 465 SER A 269 REMARK 465 THR A 270 REMARK 465 THR A 271 REMARK 465 TYR A 272 REMARK 465 GLU A 273 REMARK 465 ASP A 274 REMARK 465 ALA A 275 REMARK 465 PRO A 276 REMARK 465 SER A 277 REMARK 465 GLN A 278 REMARK 465 LEU A 279 REMARK 465 ASP A 280 REMARK 465 LEU A 306 REMARK 465 GLU A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 ILE A 310 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 SER A 313 REMARK 465 SER A 314 REMARK 465 HIS A 315 REMARK 465 THR A 342 REMARK 465 ALA A 343 REMARK 465 ASN A 344 REMARK 465 MSE A 345 REMARK 465 SER A 346 REMARK 465 THR A 347 REMARK 465 SER A 363 REMARK 465 ASN A 364 REMARK 465 SER A 365 REMARK 465 ARG A 381 REMARK 465 PRO A 382 REMARK 465 ILE A 383 REMARK 465 SER A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 VAL B 261 REMARK 465 PRO B 262 REMARK 465 PRO B 263 REMARK 465 ASP B 264 REMARK 465 GLU B 265 REMARK 465 SER B 266 REMARK 465 LEU B 267 REMARK 465 SER B 268 REMARK 465 SER B 269 REMARK 465 THR B 270 REMARK 465 THR B 271 REMARK 465 TYR B 272 REMARK 465 GLU B 273 REMARK 465 ASP B 274 REMARK 465 ALA B 275 REMARK 465 PRO B 276 REMARK 465 SER B 277 REMARK 465 GLN B 278 REMARK 465 LEU B 279 REMARK 465 ASP B 280 REMARK 465 LEU B 306 REMARK 465 GLU B 307 REMARK 465 SER B 308 REMARK 465 GLU B 309 REMARK 465 ILE B 310 REMARK 465 ASP B 311 REMARK 465 GLY B 312 REMARK 465 SER B 313 REMARK 465 SER B 314 REMARK 465 HIS B 315 REMARK 465 THR B 342 REMARK 465 ALA B 343 REMARK 465 ASN B 344 REMARK 465 MSE B 345 REMARK 465 SER B 346 REMARK 465 VAL B 361 REMARK 465 LYS B 362 REMARK 465 SER B 363 REMARK 465 ASN B 364 REMARK 465 SER B 365 REMARK 465 VAL B 380 REMARK 465 ARG B 381 REMARK 465 PRO B 382 REMARK 465 ILE B 383 REMARK 465 SER B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 140 CG OD1 ND2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 SER A 219 OG REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 VAL A 261 CG1 CG2 REMARK 470 ILE A 281 CG1 CG2 CD1 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ASN A 290 CG OD1 ND2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 SER A 294 OG REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 VAL A 301 CG1 CG2 REMARK 470 ILE A 302 CG1 CG2 CD1 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 ASN A 316 CG OD1 ND2 REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 VAL A 361 CG1 CG2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 THR A 366 OG1 CG2 REMARK 470 SER A 367 OG REMARK 470 VAL A 380 CG1 CG2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 SER B 38 OG REMARK 470 LEU B 39 CG CD1 CD2 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LEU B 118 CG CD1 CD2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ARG B 125 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 VAL B 131 CG1 CG2 REMARK 470 ASN B 132 CG OD1 ND2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 SER B 219 OG REMARK 470 ILE B 223 CG1 CG2 CD1 REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 LEU B 260 CG CD1 CD2 REMARK 470 ILE B 281 CG1 CG2 CD1 REMARK 470 ASP B 283 CG OD1 OD2 REMARK 470 ASN B 284 CG OD1 ND2 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 ASN B 290 CG OD1 ND2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 SER B 294 OG REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 ASP B 296 CG OD1 OD2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 ASP B 299 CG OD1 OD2 REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 VAL B 301 CG1 CG2 REMARK 470 ILE B 302 CG1 CG2 CD1 REMARK 470 ASN B 303 CG OD1 ND2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 ASN B 316 CG OD1 ND2 REMARK 470 THR B 347 OG1 CG2 REMARK 470 ARG B 348 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 349 CG CD1 CD2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 SER B 360 OG REMARK 470 THR B 366 OG1 CG2 REMARK 470 SER B 367 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 367 -162.79 -161.72 REMARK 500 ARG B 125 76.22 -118.71 REMARK 500 SER B 219 14.38 54.55 REMARK 500 SER B 367 -161.38 -73.71 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6A9E A 1 161 UNP A0A097J809_BPT4 DBREF2 6A9E A A0A097J809 1 161 DBREF 6A9E A 165 384 UNP O94649 ATG2_SCHPO 21 240 DBREF1 6A9E B 1 161 UNP A0A097J809_BPT4 DBREF2 6A9E B A0A097J809 1 161 DBREF 6A9E B 165 384 UNP O94649 ATG2_SCHPO 21 240 SEQADV 6A9E ASN A 20 UNP A0A097J80 ASP 20 ENGINEERED MUTATION SEQADV 6A9E THR A 54 UNP A0A097J80 CYS 54 ENGINEERED MUTATION SEQADV 6A9E ALA A 97 UNP A0A097J80 CYS 97 ENGINEERED MUTATION SEQADV 6A9E ALA A 162 UNP A0A097J80 LINKER SEQADV 6A9E ALA A 163 UNP A0A097J80 LINKER SEQADV 6A9E ALA A 164 UNP A0A097J80 LINKER SEQADV 6A9E HIS A 385 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS A 386 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS A 387 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS A 388 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS A 389 UNP O94649 EXPRESSION TAG SEQADV 6A9E ASN B 20 UNP A0A097J80 ASP 20 ENGINEERED MUTATION SEQADV 6A9E THR B 54 UNP A0A097J80 CYS 54 ENGINEERED MUTATION SEQADV 6A9E ALA B 97 UNP A0A097J80 CYS 97 ENGINEERED MUTATION SEQADV 6A9E ALA B 162 UNP A0A097J80 LINKER SEQADV 6A9E ALA B 163 UNP A0A097J80 LINKER SEQADV 6A9E ALA B 164 UNP A0A097J80 LINKER SEQADV 6A9E HIS B 385 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS B 386 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS B 387 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS B 388 UNP O94649 EXPRESSION TAG SEQADV 6A9E HIS B 389 UNP O94649 EXPRESSION TAG SEQRES 1 A 389 MSE ASN ILE PHE GLU MSE LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 389 ARG LEU LYS ILE TYR LYS ASN THR GLU GLY TYR TYR THR SEQRES 3 A 389 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 A 389 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 389 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 389 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 389 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 389 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MSE VAL PHE SEQRES 9 A 389 GLN MSE GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 A 389 LEU ARG MSE LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 389 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 A 389 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 389 THR TRP ASP ALA TYR ALA ALA ALA ARG THR VAL GLN ARG SEQRES 14 A 389 ARG LEU LEU ALA PHE ALA LEU ARG LYS LEU ILE GLY SER SEQRES 15 A 389 ILE LEU LEU GLU ASN VAL GLN PRO GLU ASP ILE ASP ILE SEQRES 16 A 389 LEU PHE SER LYS GLY VAL LEU MSE LEU SER ASN LEU GLN SEQRES 17 A 389 LEU ASN CYS SER PHE LEU ASN ALA VAL VAL SER LEU PRO SEQRES 18 A 389 MSE ILE ASN PHE THR LYS GLY THR LEU ARG ARG LEU ILE SEQRES 19 A 389 LEU ARG LEU ASN VAL THR ASP ILE VAL ASN LEU ASN VAL SEQRES 20 A 389 GLU LEU GLU VAL ASN GLY LEU SER LEU GLU ILE GLU LEU SEQRES 21 A 389 VAL PRO PRO ASP GLU SER LEU SER SER THR THR TYR GLU SEQRES 22 A 389 ASP ALA PRO SER GLN LEU ASP ILE LEU ASP ASN VAL VAL SEQRES 23 A 389 GLU TYR MSE ASN LYS THR ALA SER GLN ASP PHE GLU ASP SEQRES 24 A 389 GLU VAL ILE ASN GLU GLY LEU GLU SER GLU ILE ASP GLY SEQRES 25 A 389 SER SER HIS ASN LEU LEU ASP SER ILE LEU GLN LYS CYS SEQRES 26 A 389 LEU ALA SER THR SER VAL LEU MSE GLN ASP ALA LEU VAL SEQRES 27 A 389 TYR ILE GLY THR ALA ASN MSE SER THR ARG LEU GLU ALA SEQRES 28 A 389 LYS LEU ASP PHE MSE SER PHE SER SER VAL LYS SER ASN SEQRES 29 A 389 SER THR SER ARG LEU LEU ASN ILE ASN GLY ILE THR VAL SEQRES 30 A 389 SER MSE VAL ARG PRO ILE SER HIS HIS HIS HIS HIS SEQRES 1 B 389 MSE ASN ILE PHE GLU MSE LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 389 ARG LEU LYS ILE TYR LYS ASN THR GLU GLY TYR TYR THR SEQRES 3 B 389 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 B 389 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 389 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 389 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 B 389 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 389 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MSE VAL PHE SEQRES 9 B 389 GLN MSE GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 B 389 LEU ARG MSE LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 389 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 B 389 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 B 389 THR TRP ASP ALA TYR ALA ALA ALA ARG THR VAL GLN ARG SEQRES 14 B 389 ARG LEU LEU ALA PHE ALA LEU ARG LYS LEU ILE GLY SER SEQRES 15 B 389 ILE LEU LEU GLU ASN VAL GLN PRO GLU ASP ILE ASP ILE SEQRES 16 B 389 LEU PHE SER LYS GLY VAL LEU MSE LEU SER ASN LEU GLN SEQRES 17 B 389 LEU ASN CYS SER PHE LEU ASN ALA VAL VAL SER LEU PRO SEQRES 18 B 389 MSE ILE ASN PHE THR LYS GLY THR LEU ARG ARG LEU ILE SEQRES 19 B 389 LEU ARG LEU ASN VAL THR ASP ILE VAL ASN LEU ASN VAL SEQRES 20 B 389 GLU LEU GLU VAL ASN GLY LEU SER LEU GLU ILE GLU LEU SEQRES 21 B 389 VAL PRO PRO ASP GLU SER LEU SER SER THR THR TYR GLU SEQRES 22 B 389 ASP ALA PRO SER GLN LEU ASP ILE LEU ASP ASN VAL VAL SEQRES 23 B 389 GLU TYR MSE ASN LYS THR ALA SER GLN ASP PHE GLU ASP SEQRES 24 B 389 GLU VAL ILE ASN GLU GLY LEU GLU SER GLU ILE ASP GLY SEQRES 25 B 389 SER SER HIS ASN LEU LEU ASP SER ILE LEU GLN LYS CYS SEQRES 26 B 389 LEU ALA SER THR SER VAL LEU MSE GLN ASP ALA LEU VAL SEQRES 27 B 389 TYR ILE GLY THR ALA ASN MSE SER THR ARG LEU GLU ALA SEQRES 28 B 389 LYS LEU ASP PHE MSE SER PHE SER SER VAL LYS SER ASN SEQRES 29 B 389 SER THR SER ARG LEU LEU ASN ILE ASN GLY ILE THR VAL SEQRES 30 B 389 SER MSE VAL ARG PRO ILE SER HIS HIS HIS HIS HIS MODRES 6A9E MSE A 1 MET MODIFIED RESIDUE MODRES 6A9E MSE A 6 MET MODIFIED RESIDUE MODRES 6A9E MSE A 102 MET MODIFIED RESIDUE MODRES 6A9E MSE A 106 MET MODIFIED RESIDUE MODRES 6A9E MSE A 120 MET MODIFIED RESIDUE MODRES 6A9E MSE A 203 MET MODIFIED RESIDUE MODRES 6A9E MSE A 289 MET MODIFIED RESIDUE MODRES 6A9E MSE A 333 MET MODIFIED RESIDUE MODRES 6A9E MSE A 356 MET MODIFIED RESIDUE MODRES 6A9E MSE A 379 MET MODIFIED RESIDUE MODRES 6A9E MSE B 1 MET MODIFIED RESIDUE MODRES 6A9E MSE B 6 MET MODIFIED RESIDUE MODRES 6A9E MSE B 102 MET MODIFIED RESIDUE MODRES 6A9E MSE B 106 MET MODIFIED RESIDUE MODRES 6A9E MSE B 120 MET MODIFIED RESIDUE MODRES 6A9E MSE B 203 MET MODIFIED RESIDUE MODRES 6A9E MSE B 222 MET MODIFIED RESIDUE MODRES 6A9E MSE B 289 MET MODIFIED RESIDUE MODRES 6A9E MSE B 333 MET MODIFIED RESIDUE MODRES 6A9E MSE B 356 MET MODIFIED RESIDUE MODRES 6A9E MSE B 379 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 6 8 HET MSE A 102 8 HET MSE A 106 8 HET MSE A 120 8 HET MSE A 203 8 HET MSE A 289 8 HET MSE A 333 8 HET MSE A 356 8 HET MSE A 379 8 HET MSE B 1 8 HET MSE B 6 8 HET MSE B 102 8 HET MSE B 106 8 HET MSE B 120 8 HET MSE B 203 8 HET MSE B 222 8 HET MSE B 289 8 HET MSE B 333 8 HET MSE B 356 8 HET MSE B 379 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 21(C5 H11 N O2 SE) HELIX 1 AA1 ASN A 2 GLY A 12 1 11 HELIX 2 AA2 SER A 38 GLY A 51 1 14 HELIX 3 AA3 THR A 59 ASN A 81 1 23 HELIX 4 AA4 LYS A 83 SER A 90 1 8 HELIX 5 AA5 ASP A 92 ALA A 112 1 21 HELIX 6 AA6 PHE A 114 GLN A 123 1 10 HELIX 7 AA7 ARG A 125 LYS A 135 1 11 HELIX 8 AA8 SER A 136 THR A 142 1 7 HELIX 9 AA9 THR A 142 GLY A 156 1 15 HELIX 10 AB1 TRP A 158 LEU A 184 1 27 HELIX 11 AB2 GLN A 189 LYS A 199 1 11 HELIX 12 AB3 ASN A 210 SER A 219 1 10 HELIX 13 AB4 VAL A 239 ILE A 242 5 4 HELIX 14 AB5 LEU A 282 ALA A 293 1 12 HELIX 15 AB6 ALA A 293 GLY A 305 1 13 HELIX 16 AB7 LEU A 317 SER A 328 1 12 HELIX 17 AB8 ASN B 2 GLY B 12 1 11 HELIX 18 AB9 ASN B 40 GLY B 51 1 12 HELIX 19 AC1 THR B 59 ASN B 81 1 23 HELIX 20 AC2 LYS B 83 SER B 90 1 8 HELIX 21 AC3 ASP B 92 MSE B 106 1 15 HELIX 22 AC4 GLY B 107 ALA B 112 1 6 HELIX 23 AC5 PHE B 114 GLN B 123 1 10 HELIX 24 AC6 ARG B 125 LYS B 135 1 11 HELIX 25 AC7 SER B 136 THR B 142 1 7 HELIX 26 AC8 THR B 142 GLY B 156 1 15 HELIX 27 AC9 TRP B 158 LEU B 184 1 27 HELIX 28 AD1 GLN B 189 LYS B 199 1 11 HELIX 29 AD2 ASN B 210 SER B 219 1 10 HELIX 30 AD3 LEU B 282 GLY B 305 1 24 HELIX 31 AD4 LEU B 317 SER B 328 1 12 SHEET 1 AA1 3 TYR A 18 LYS A 19 0 SHEET 2 AA1 3 TYR A 25 ILE A 27 -1 O THR A 26 N TYR A 18 SHEET 3 AA1 3 HIS A 31 THR A 34 -1 O HIS A 31 N ILE A 27 SHEET 1 AA2 6 VAL A 201 SER A 205 0 SHEET 2 AA2 6 ASN A 224 LEU A 237 -1 O LEU A 235 N LEU A 202 SHEET 3 AA2 6 VAL A 247 GLU A 259 -1 O GLU A 259 N ASN A 224 SHEET 4 AA2 6 THR A 329 ILE A 340 1 O SER A 330 N LEU A 249 SHEET 5 AA2 6 LEU A 349 SER A 359 -1 O ALA A 351 N VAL A 338 SHEET 6 AA2 6 LEU A 369 ASN A 373 -1 O ASN A 373 N PHE A 355 SHEET 1 AA3 6 VAL A 201 SER A 205 0 SHEET 2 AA3 6 ASN A 224 LEU A 237 -1 O LEU A 235 N LEU A 202 SHEET 3 AA3 6 VAL A 247 GLU A 259 -1 O GLU A 259 N ASN A 224 SHEET 4 AA3 6 THR A 329 ILE A 340 1 O SER A 330 N LEU A 249 SHEET 5 AA3 6 LEU A 349 SER A 359 -1 O ALA A 351 N VAL A 338 SHEET 6 AA3 6 THR A 376 SER A 378 -1 O SER A 378 N GLU A 350 SHEET 1 AA4 3 ARG B 14 LYS B 19 0 SHEET 2 AA4 3 TYR B 25 GLY B 28 -1 O THR B 26 N TYR B 18 SHEET 3 AA4 3 HIS B 31 LEU B 32 -1 O HIS B 31 N ILE B 27 SHEET 1 AA5 6 VAL B 201 GLN B 208 0 SHEET 2 AA5 6 ASN B 224 LEU B 237 -1 O LEU B 233 N LEU B 204 SHEET 3 AA5 6 VAL B 247 GLU B 259 -1 O GLU B 257 N THR B 226 SHEET 4 AA5 6 THR B 329 ILE B 340 1 O TYR B 339 N ILE B 258 SHEET 5 AA5 6 LEU B 349 SER B 359 -1 O ALA B 351 N VAL B 338 SHEET 6 AA5 6 LEU B 369 SER B 378 -1 O ASN B 373 N PHE B 355 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C GLU A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N LEU A 7 1555 1555 1.33 LINK C ASN A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N VAL A 103 1555 1555 1.33 LINK C GLN A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N GLY A 107 1555 1555 1.33 LINK C ARG A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N LEU A 121 1555 1555 1.33 LINK C LEU A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N LEU A 204 1555 1555 1.33 LINK C TYR A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N ASN A 290 1555 1555 1.34 LINK C LEU A 332 N MSE A 333 1555 1555 1.33 LINK C MSE A 333 N GLN A 334 1555 1555 1.33 LINK C PHE A 355 N MSE A 356 1555 1555 1.33 LINK C MSE A 356 N SER A 357 1555 1555 1.33 LINK C SER A 378 N MSE A 379 1555 1555 1.33 LINK C MSE A 379 N VAL A 380 1555 1555 1.33 LINK C MSE B 1 N ASN B 2 1555 1555 1.33 LINK C GLU B 5 N MSE B 6 1555 1555 1.33 LINK C MSE B 6 N LEU B 7 1555 1555 1.33 LINK C ASN B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N VAL B 103 1555 1555 1.33 LINK C GLN B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N GLY B 107 1555 1555 1.33 LINK C ARG B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N LEU B 121 1555 1555 1.33 LINK C LEU B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N LEU B 204 1555 1555 1.33 LINK C PRO B 221 N MSE B 222 1555 1555 1.33 LINK C MSE B 222 N ILE B 223 1555 1555 1.33 LINK C TYR B 288 N MSE B 289 1555 1555 1.33 LINK C MSE B 289 N ASN B 290 1555 1555 1.33 LINK C LEU B 332 N MSE B 333 1555 1555 1.33 LINK C MSE B 333 N GLN B 334 1555 1555 1.33 LINK C PHE B 355 N MSE B 356 1555 1555 1.33 LINK C MSE B 356 N SER B 357 1555 1555 1.33 LINK C SER B 378 N MSE B 379 1555 1555 1.33 CRYST1 86.451 62.695 86.317 90.00 91.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011567 0.000000 0.000370 0.00000 SCALE2 0.000000 0.015950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011591 0.00000 HETATM 1 N MSE A 1 -22.950 -17.622 -18.741 1.00 64.16 N HETATM 2 CA MSE A 1 -24.227 -17.251 -19.343 1.00 72.33 C HETATM 3 C MSE A 1 -24.939 -16.157 -18.554 1.00 75.17 C HETATM 4 O MSE A 1 -25.315 -16.355 -17.398 1.00 83.69 O HETATM 5 CB MSE A 1 -25.138 -18.476 -19.462 1.00 74.50 C HETATM 6 CG MSE A 1 -25.083 -19.185 -20.809 1.00 83.61 C HETATM 7 SE MSE A 1 -26.053 -18.244 -22.224 1.00 85.81 SE HETATM 8 CE MSE A 1 -27.769 -18.044 -21.334 1.00 78.13 C