HEADER LIPID TRANSPORT 13-JUL-18 6A9J TITLE CRYSTAL STRUCTURE OF THE PE-BOUND N-TERMINAL DOMAIN OF ATG2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOLYSIN,AUTOPHAGY-RELATED PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIS PROTEIN,LYSOZYME,MURAMIDASE,MEIOTICALLY UP-REGULATED COMPND 5 GENE 36 PROTEIN; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE DELETED REGIONS IN OUR STRUCTURE ARE DUE TO COMPND 10 ELECTRON DENSITY DISORDER. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB59, SCHIZOSACCHAROMYCES SOURCE 3 POMBE; SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 697290, 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: E, RB59_126, ATG2, MUG36, SPBC31E1.01C, SPBC660.18C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.OSAWA,N.N.NODA REVDAT 6 22-NOV-23 6A9J 1 REMARK REVDAT 5 06-OCT-21 6A9J 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL ATOM REVDAT 4 17-APR-19 6A9J 1 JRNL REVDAT 3 10-APR-19 6A9J 1 JRNL REVDAT 2 27-MAR-19 6A9J 1 JRNL REVDAT 1 20-MAR-19 6A9J 0 JRNL AUTH T.OSAWA,T.KOTANI,T.KAWAOKA,E.HIRATA,K.SUZUKI,H.NAKATOGAWA, JRNL AUTH 2 Y.OHSUMI,N.N.NODA JRNL TITL ATG2 MEDIATES DIRECT LIPID TRANSFER BETWEEN MEMBRANES FOR JRNL TITL 2 AUTOPHAGOSOME FORMATION. JRNL REF NAT. STRUCT. MOL. BIOL. V. 26 281 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 30911189 JRNL DOI 10.1038/S41594-019-0203-4 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9060 - 5.6012 0.95 2816 142 0.2599 0.2595 REMARK 3 2 5.6012 - 4.4517 0.94 2725 163 0.2025 0.2177 REMARK 3 3 4.4517 - 3.8907 0.94 2716 166 0.2292 0.2442 REMARK 3 4 3.8907 - 3.5357 0.95 2746 147 0.2416 0.2486 REMARK 3 5 3.5357 - 3.2827 0.95 2730 131 0.2578 0.3146 REMARK 3 6 3.2827 - 3.0894 0.95 2706 145 0.3020 0.3347 REMARK 3 7 3.0894 - 2.9349 0.95 2728 135 0.3207 0.3885 REMARK 3 8 2.9349 - 2.8072 0.95 2688 147 0.3329 0.4120 REMARK 3 9 2.8072 - 2.6993 0.94 2697 140 0.3396 0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5148 REMARK 3 ANGLE : 0.863 6952 REMARK 3 CHIRALITY : 0.033 851 REMARK 3 PLANARITY : 0.004 877 REMARK 3 DIHEDRAL : 15.461 1872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.38100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6A9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, AMMONIUM SULFATE, BIS-TRIS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.43050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 220 REMARK 465 PRO A 221 REMARK 465 MET A 222 REMARK 465 VAL A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 ASP A 264 REMARK 465 GLU A 265 REMARK 465 SER A 266 REMARK 465 LEU A 267 REMARK 465 SER A 268 REMARK 465 SER A 269 REMARK 465 THR A 270 REMARK 465 THR A 271 REMARK 465 TYR A 272 REMARK 465 GLU A 273 REMARK 465 ASP A 274 REMARK 465 ALA A 275 REMARK 465 PRO A 276 REMARK 465 SER A 277 REMARK 465 GLN A 278 REMARK 465 LEU A 279 REMARK 465 ASP A 280 REMARK 465 LEU A 306 REMARK 465 GLU A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 ILE A 310 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 SER A 313 REMARK 465 SER A 314 REMARK 465 HIS A 315 REMARK 465 THR A 342 REMARK 465 ALA A 343 REMARK 465 ASN A 344 REMARK 465 MET A 345 REMARK 465 SER A 346 REMARK 465 THR A 347 REMARK 465 SER A 363 REMARK 465 ASN A 364 REMARK 465 SER A 365 REMARK 465 VAL A 380 REMARK 465 ARG A 381 REMARK 465 PRO A 382 REMARK 465 ILE A 383 REMARK 465 SER A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 LEU B 220 REMARK 465 PRO B 221 REMARK 465 VAL B 261 REMARK 465 PRO B 262 REMARK 465 PRO B 263 REMARK 465 ASP B 264 REMARK 465 GLU B 265 REMARK 465 SER B 266 REMARK 465 LEU B 267 REMARK 465 SER B 268 REMARK 465 SER B 269 REMARK 465 THR B 270 REMARK 465 THR B 271 REMARK 465 TYR B 272 REMARK 465 GLU B 273 REMARK 465 ASP B 274 REMARK 465 ALA B 275 REMARK 465 PRO B 276 REMARK 465 SER B 277 REMARK 465 GLN B 278 REMARK 465 LEU B 279 REMARK 465 ASP B 280 REMARK 465 SER B 308 REMARK 465 GLU B 309 REMARK 465 ILE B 310 REMARK 465 ASP B 311 REMARK 465 GLY B 312 REMARK 465 SER B 313 REMARK 465 SER B 314 REMARK 465 HIS B 315 REMARK 465 THR B 342 REMARK 465 ALA B 343 REMARK 465 ASN B 344 REMARK 465 MET B 345 REMARK 465 SER B 346 REMARK 465 VAL B 361 REMARK 465 LYS B 362 REMARK 465 SER B 363 REMARK 465 ASN B 364 REMARK 465 SER B 365 REMARK 465 VAL B 380 REMARK 465 ARG B 381 REMARK 465 PRO B 382 REMARK 465 ILE B 383 REMARK 465 SER B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 SER A 38 OG REMARK 470 LEU A 46 CG CD1 CD2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 LEU A 118 CG CD1 CD2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ASN A 140 CG OD1 ND2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 THR A 157 OG1 CG2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 SER A 219 OG REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 THR A 226 OG1 CG2 REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 ILE A 281 CG1 CG2 CD1 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ASN A 290 CG OD1 ND2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 SER A 294 OG REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 VAL A 301 CG1 CG2 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 ASN A 316 CG OD1 ND2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 VAL A 361 CG1 CG2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 THR A 366 OG1 CG2 REMARK 470 SER A 367 OG REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 SER B 38 OG REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LEU B 66 CG CD1 CD2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LEU B 118 CG CD1 CD2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ARG B 125 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 VAL B 131 CG1 CG2 REMARK 470 ASN B 132 CG OD1 ND2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 SER B 136 OG REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 SER B 219 OG REMARK 470 ILE B 223 CG1 CG2 CD1 REMARK 470 THR B 226 OG1 CG2 REMARK 470 LEU B 260 CG CD1 CD2 REMARK 470 ILE B 281 CG1 CG2 CD1 REMARK 470 ASP B 283 CG OD1 OD2 REMARK 470 ASN B 284 CG OD1 ND2 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 MET B 289 CG SD CE REMARK 470 ASN B 290 CG OD1 ND2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 SER B 294 OG REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 ASP B 296 CG OD1 OD2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 ASP B 299 CG OD1 OD2 REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 VAL B 301 CG1 CG2 REMARK 470 ILE B 302 CG1 CG2 CD1 REMARK 470 ASN B 303 CG OD1 ND2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 ASN B 316 CG OD1 ND2 REMARK 470 THR B 347 OG1 CG2 REMARK 470 ARG B 348 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 349 CG CD1 CD2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 SER B 359 OG REMARK 470 SER B 360 OG REMARK 470 THR B 366 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 20 -164.36 -74.40 REMARK 500 ALA A 112 1.55 -66.60 REMARK 500 LYS A 135 70.38 -105.58 REMARK 500 TRP A 158 33.79 -96.58 REMARK 500 SER A 367 -167.18 -164.24 REMARK 500 ASN B 20 -166.45 -76.66 REMARK 500 PHE B 114 56.60 -90.56 REMARK 500 LYS B 135 72.30 -106.56 REMARK 500 TRP B 158 36.03 -97.72 REMARK 500 ASN B 238 74.15 -68.30 REMARK 500 SER B 367 -165.15 -77.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 401 DBREF1 6A9J A 1 161 UNP A0A097J809_BPT4 DBREF2 6A9J A A0A097J809 1 161 DBREF 6A9J A 165 384 UNP O94649 ATG2_SCHPO 21 240 DBREF1 6A9J B 1 161 UNP A0A097J809_BPT4 DBREF2 6A9J B A0A097J809 1 161 DBREF 6A9J B 165 384 UNP O94649 ATG2_SCHPO 21 240 SEQADV 6A9J ASN A 20 UNP A0A097J80 ASP 20 ENGINEERED MUTATION SEQADV 6A9J THR A 54 UNP A0A097J80 CYS 54 ENGINEERED MUTATION SEQADV 6A9J ALA A 97 UNP A0A097J80 CYS 97 ENGINEERED MUTATION SEQADV 6A9J ALA A 162 UNP A0A097J80 LINKER SEQADV 6A9J ALA A 163 UNP A0A097J80 LINKER SEQADV 6A9J ALA A 164 UNP A0A097J80 LINKER SEQADV 6A9J HIS A 385 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS A 386 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS A 387 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS A 388 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS A 389 UNP O94649 EXPRESSION TAG SEQADV 6A9J ASN B 20 UNP A0A097J80 ASP 20 ENGINEERED MUTATION SEQADV 6A9J THR B 54 UNP A0A097J80 CYS 54 ENGINEERED MUTATION SEQADV 6A9J ALA B 97 UNP A0A097J80 CYS 97 ENGINEERED MUTATION SEQADV 6A9J ALA B 162 UNP A0A097J80 LINKER SEQADV 6A9J ALA B 163 UNP A0A097J80 LINKER SEQADV 6A9J ALA B 164 UNP A0A097J80 LINKER SEQADV 6A9J HIS B 385 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS B 386 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS B 387 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS B 388 UNP O94649 EXPRESSION TAG SEQADV 6A9J HIS B 389 UNP O94649 EXPRESSION TAG SEQRES 1 A 389 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 389 ARG LEU LYS ILE TYR LYS ASN THR GLU GLY TYR TYR THR SEQRES 3 A 389 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 A 389 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 389 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 389 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 389 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 389 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 A 389 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 A 389 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 389 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 A 389 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 389 THR TRP ASP ALA TYR ALA ALA ALA ARG THR VAL GLN ARG SEQRES 14 A 389 ARG LEU LEU ALA PHE ALA LEU ARG LYS LEU ILE GLY SER SEQRES 15 A 389 ILE LEU LEU GLU ASN VAL GLN PRO GLU ASP ILE ASP ILE SEQRES 16 A 389 LEU PHE SER LYS GLY VAL LEU MET LEU SER ASN LEU GLN SEQRES 17 A 389 LEU ASN CYS SER PHE LEU ASN ALA VAL VAL SER LEU PRO SEQRES 18 A 389 MET ILE ASN PHE THR LYS GLY THR LEU ARG ARG LEU ILE SEQRES 19 A 389 LEU ARG LEU ASN VAL THR ASP ILE VAL ASN LEU ASN VAL SEQRES 20 A 389 GLU LEU GLU VAL ASN GLY LEU SER LEU GLU ILE GLU LEU SEQRES 21 A 389 VAL PRO PRO ASP GLU SER LEU SER SER THR THR TYR GLU SEQRES 22 A 389 ASP ALA PRO SER GLN LEU ASP ILE LEU ASP ASN VAL VAL SEQRES 23 A 389 GLU TYR MET ASN LYS THR ALA SER GLN ASP PHE GLU ASP SEQRES 24 A 389 GLU VAL ILE ASN GLU GLY LEU GLU SER GLU ILE ASP GLY SEQRES 25 A 389 SER SER HIS ASN LEU LEU ASP SER ILE LEU GLN LYS CYS SEQRES 26 A 389 LEU ALA SER THR SER VAL LEU MET GLN ASP ALA LEU VAL SEQRES 27 A 389 TYR ILE GLY THR ALA ASN MET SER THR ARG LEU GLU ALA SEQRES 28 A 389 LYS LEU ASP PHE MET SER PHE SER SER VAL LYS SER ASN SEQRES 29 A 389 SER THR SER ARG LEU LEU ASN ILE ASN GLY ILE THR VAL SEQRES 30 A 389 SER MET VAL ARG PRO ILE SER HIS HIS HIS HIS HIS SEQRES 1 B 389 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 389 ARG LEU LYS ILE TYR LYS ASN THR GLU GLY TYR TYR THR SEQRES 3 B 389 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 B 389 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 389 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 389 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 B 389 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 389 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 B 389 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 B 389 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 389 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 B 389 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 B 389 THR TRP ASP ALA TYR ALA ALA ALA ARG THR VAL GLN ARG SEQRES 14 B 389 ARG LEU LEU ALA PHE ALA LEU ARG LYS LEU ILE GLY SER SEQRES 15 B 389 ILE LEU LEU GLU ASN VAL GLN PRO GLU ASP ILE ASP ILE SEQRES 16 B 389 LEU PHE SER LYS GLY VAL LEU MET LEU SER ASN LEU GLN SEQRES 17 B 389 LEU ASN CYS SER PHE LEU ASN ALA VAL VAL SER LEU PRO SEQRES 18 B 389 MET ILE ASN PHE THR LYS GLY THR LEU ARG ARG LEU ILE SEQRES 19 B 389 LEU ARG LEU ASN VAL THR ASP ILE VAL ASN LEU ASN VAL SEQRES 20 B 389 GLU LEU GLU VAL ASN GLY LEU SER LEU GLU ILE GLU LEU SEQRES 21 B 389 VAL PRO PRO ASP GLU SER LEU SER SER THR THR TYR GLU SEQRES 22 B 389 ASP ALA PRO SER GLN LEU ASP ILE LEU ASP ASN VAL VAL SEQRES 23 B 389 GLU TYR MET ASN LYS THR ALA SER GLN ASP PHE GLU ASP SEQRES 24 B 389 GLU VAL ILE ASN GLU GLY LEU GLU SER GLU ILE ASP GLY SEQRES 25 B 389 SER SER HIS ASN LEU LEU ASP SER ILE LEU GLN LYS CYS SEQRES 26 B 389 LEU ALA SER THR SER VAL LEU MET GLN ASP ALA LEU VAL SEQRES 27 B 389 TYR ILE GLY THR ALA ASN MET SER THR ARG LEU GLU ALA SEQRES 28 B 389 LYS LEU ASP PHE MET SER PHE SER SER VAL LYS SER ASN SEQRES 29 B 389 SER THR SER ARG LEU LEU ASN ILE ASN GLY ILE THR VAL SEQRES 30 B 389 SER MET VAL ARG PRO ILE SER HIS HIS HIS HIS HIS HET PEE A 401 51 HET PEE B 401 51 HETNAM PEE 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE HETSYN PEE DOPE FORMUL 3 PEE 2(C41 H78 N O8 P) HELIX 1 AA1 ASN A 2 GLY A 12 1 11 HELIX 2 AA2 SER A 38 GLY A 51 1 14 HELIX 3 AA3 THR A 59 ASN A 81 1 23 HELIX 4 AA4 LYS A 83 SER A 90 1 8 HELIX 5 AA5 ASP A 92 GLY A 107 1 16 HELIX 6 AA6 GLY A 107 ALA A 112 1 6 HELIX 7 AA7 PHE A 114 GLN A 123 1 10 HELIX 8 AA8 ARG A 125 ALA A 134 1 10 HELIX 9 AA9 SER A 136 THR A 142 1 7 HELIX 10 AB1 THR A 142 GLY A 156 1 15 HELIX 11 AB2 TRP A 158 LEU A 184 1 27 HELIX 12 AB3 GLN A 189 LYS A 199 1 11 HELIX 13 AB4 ASN A 210 VAL A 218 1 9 HELIX 14 AB5 VAL A 239 ILE A 242 5 4 HELIX 15 AB6 LEU A 282 ALA A 293 1 12 HELIX 16 AB7 ALA A 293 GLY A 305 1 13 HELIX 17 AB8 LEU A 317 SER A 328 1 12 HELIX 18 AB9 ASN B 2 GLY B 12 1 11 HELIX 19 AC1 ASN B 40 GLY B 51 1 12 HELIX 20 AC2 THR B 59 ASN B 81 1 23 HELIX 21 AC3 LYS B 83 SER B 90 1 8 HELIX 22 AC4 ASP B 92 GLY B 107 1 16 HELIX 23 AC5 GLY B 107 ALA B 112 1 6 HELIX 24 AC6 PHE B 114 GLN B 123 1 10 HELIX 25 AC7 ARG B 125 ALA B 134 1 10 HELIX 26 AC8 SER B 136 THR B 142 1 7 HELIX 27 AC9 THR B 142 GLY B 156 1 15 HELIX 28 AD1 TRP B 158 LEU B 184 1 27 HELIX 29 AD2 GLN B 189 LYS B 199 1 11 HELIX 30 AD3 ASN B 210 SER B 219 1 10 HELIX 31 AD4 LEU B 282 GLY B 305 1 24 HELIX 32 AD5 LEU B 317 SER B 328 1 12 SHEET 1 AA1 3 TYR A 18 LYS A 19 0 SHEET 2 AA1 3 TYR A 25 ILE A 27 -1 O THR A 26 N TYR A 18 SHEET 3 AA1 3 HIS A 31 THR A 34 -1 O HIS A 31 N ILE A 27 SHEET 1 AA2 6 VAL A 201 SER A 205 0 SHEET 2 AA2 6 ASN A 224 LEU A 237 -1 O LEU A 235 N LEU A 202 SHEET 3 AA2 6 VAL A 247 GLU A 259 -1 O GLU A 259 N ASN A 224 SHEET 4 AA2 6 THR A 329 ILE A 340 1 O SER A 330 N VAL A 247 SHEET 5 AA2 6 LEU A 349 SER A 360 -1 O ALA A 351 N VAL A 338 SHEET 6 AA2 6 ARG A 368 ASN A 373 -1 O ASN A 373 N PHE A 355 SHEET 1 AA3 6 VAL A 201 SER A 205 0 SHEET 2 AA3 6 ASN A 224 LEU A 237 -1 O LEU A 235 N LEU A 202 SHEET 3 AA3 6 VAL A 247 GLU A 259 -1 O GLU A 259 N ASN A 224 SHEET 4 AA3 6 THR A 329 ILE A 340 1 O SER A 330 N VAL A 247 SHEET 5 AA3 6 LEU A 349 SER A 360 -1 O ALA A 351 N VAL A 338 SHEET 6 AA3 6 THR A 376 SER A 378 -1 O SER A 378 N GLU A 350 SHEET 1 AA4 3 TYR B 18 LYS B 19 0 SHEET 2 AA4 3 TYR B 25 ILE B 27 -1 O THR B 26 N TYR B 18 SHEET 3 AA4 3 HIS B 31 LEU B 32 -1 O HIS B 31 N ILE B 27 SHEET 1 AA5 6 VAL B 201 GLN B 208 0 SHEET 2 AA5 6 ASN B 224 LEU B 237 -1 O ARG B 231 N ASN B 206 SHEET 3 AA5 6 VAL B 247 GLU B 259 -1 O GLU B 257 N THR B 226 SHEET 4 AA5 6 THR B 329 ILE B 340 1 O SER B 330 N LEU B 249 SHEET 5 AA5 6 LEU B 349 SER B 359 -1 O ALA B 351 N VAL B 338 SHEET 6 AA5 6 LEU B 369 SER B 378 -1 O ASN B 373 N PHE B 355 SITE 1 AC1 8 LEU A 15 ILE A 183 LEU A 282 LEU A 326 SITE 2 AC1 8 PHE A 358 SER A 367 ARG A 368 LEU A 370 SITE 1 AC2 9 LEU B 15 VAL B 57 ILE B 58 LEU B 214 SITE 2 AC2 9 ILE B 281 LEU B 282 PHE B 358 SER B 367 SITE 3 AC2 9 ARG B 368 CRYST1 86.657 62.861 86.662 90.00 91.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011540 0.000000 0.000382 0.00000 SCALE2 0.000000 0.015908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011545 0.00000