HEADER HYDROLASE 16-JUL-18 6A9V TITLE CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL TITLE 2 42 RESIDUES DELETION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERMEDIATE CLEAVING PEPTIDASE 55; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INTERMEDIATE CLEAVING PEPTIDASE OF 55 KDA; COMPND 5 EC: 3.4.11.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: ICP55, YER078C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PST50STR KEYWDS INTERMEDIATE CLEAVING PEPTIDASE 55, M24B, PEPTIDASE, XAA-PRO KEYWDS 2 AMINOPEPTIDASE, MITOCHONDRIAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SINGH,A.KUMAR,V.D.GOYAL,R.D.MAKDE REVDAT 3 27-MAR-24 6A9V 1 REMARK REVDAT 2 13-MAR-19 6A9V 1 JRNL REVDAT 1 16-JAN-19 6A9V 0 JRNL AUTH R.SINGH,V.D.GOYAL,A.KUMAR,N.S.SABHARWAL,R.D.MAKDE JRNL TITL CRYSTAL STRUCTURES AND BIOCHEMICAL ANALYSES OF INTERMEDIATE JRNL TITL 2 CLEAVAGE PEPTIDASE: ROLE OF DYNAMICS IN ENZYMATIC FUNCTION. JRNL REF FEBS LETT. V. 593 443 2019 JRNL REFN ISSN 1873-3468 JRNL PMID 30582634 JRNL DOI 10.1002/1873-3468.13321 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.340 REMARK 3 FREE R VALUE TEST SET COUNT : 734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5593 - 4.9576 0.99 2714 155 0.2035 0.1908 REMARK 3 2 4.9576 - 3.9357 1.00 2628 135 0.1733 0.2108 REMARK 3 3 3.9357 - 3.4384 1.00 2587 142 0.2163 0.2148 REMARK 3 4 3.4384 - 3.1241 1.00 2555 160 0.2576 0.2745 REMARK 3 5 3.1241 - 2.9002 1.00 2533 142 0.3022 0.3171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3184 REMARK 3 ANGLE : 0.460 4304 REMARK 3 CHIRALITY : 0.041 477 REMARK 3 PLANARITY : 0.004 560 REMARK 3 DIHEDRAL : 12.474 1921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.5926 -35.3709 -16.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.3753 T22: 0.2702 REMARK 3 T33: 0.3368 T12: 0.0492 REMARK 3 T13: -0.0790 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.0173 L22: 0.8824 REMARK 3 L33: 1.3674 L12: 0.8347 REMARK 3 L13: -0.1786 L23: 0.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: -0.0503 S13: -0.0124 REMARK 3 S21: 0.0463 S22: 0.0145 S23: -0.0516 REMARK 3 S31: 0.1409 S32: 0.0707 S33: 0.0519 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6A9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13770 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.554 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 22 % PEG3350 , REMARK 280 250MM AMMONIUM SULPHATE, 0.2MM MNCL2, MICROBATCH, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 71.04050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.36550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 71.04050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 59.36550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 71.04050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 59.36550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 71.04050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 59.36550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.04050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 59.36550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.04050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.36550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 71.04050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.36550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 71.04050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 71.04050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.36550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 465 GLY A 45 REMARK 465 GLN A 46 REMARK 465 PRO A 47 REMARK 465 LEU A 48 REMARK 465 HIS A 49 REMARK 465 GLU A 50 REMARK 465 THR A 51 REMARK 465 ARG A 52 REMARK 465 PRO A 53 REMARK 465 PHE A 54 REMARK 465 LEU A 55 REMARK 465 ILE A 56 REMARK 465 LYS A 57 REMARK 465 SER A 58 REMARK 465 GLN A 95 REMARK 465 PHE A 96 REMARK 465 ALA A 97 REMARK 465 SER A 98 REMARK 465 GLY A 99 REMARK 465 ALA A 100 REMARK 465 VAL A 101 REMARK 465 PHE A 102 REMARK 465 TYR A 103 REMARK 465 PRO A 104 REMARK 465 LYS A 145 REMARK 465 ASP A 146 REMARK 465 ALA A 147 REMARK 465 PHE A 148 REMARK 465 ALA A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 TRP A 152 REMARK 465 GLU A 153 REMARK 465 GLY A 154 REMARK 465 PHE A 155 REMARK 465 ARG A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 VAL A 159 REMARK 465 TYR A 160 REMARK 465 SER A 197 REMARK 465 THR A 198 REMARK 465 SER A 199 REMARK 465 ASN A 200 REMARK 465 PRO A 201 REMARK 465 ASP A 214 REMARK 465 GLY A 215 REMARK 465 SER A 216 REMARK 465 GLY A 217 REMARK 465 ASN A 218 REMARK 465 SER A 219 REMARK 465 ASN A 220 REMARK 465 ARG A 221 REMARK 465 SER A 222 REMARK 465 LEU A 223 REMARK 465 ASN A 224 REMARK 465 SER A 225 REMARK 465 ILE A 226 REMARK 465 ALA A 227 REMARK 465 ASN A 228 REMARK 465 LYS A 229 REMARK 465 LEU A 499 REMARK 465 SER A 500 REMARK 465 THR A 501 REMARK 465 LYS A 502 REMARK 465 PHE A 503 REMARK 465 GLU A 504 REMARK 465 GLU A 505 REMARK 465 ASP A 506 REMARK 465 GLN A 507 REMARK 465 VAL A 508 REMARK 465 ALA A 509 REMARK 465 PRO A 510 REMARK 465 LEU A 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 SER A 202 OG REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 63 109.61 -53.33 REMARK 500 SER A 115 -37.56 -135.40 REMARK 500 THR A 130 -169.51 -119.87 REMARK 500 ASP A 315 11.29 -150.74 REMARK 500 VAL A 426 68.30 30.04 REMARK 500 LYS A 486 -11.88 -143.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 327 OD1 REMARK 620 2 ASP A 327 OD2 58.1 REMARK 620 3 ASP A 338 OD1 80.6 138.5 REMARK 620 4 GLU A 467 OE1 103.9 100.7 84.0 REMARK 620 5 GLY A 604 O 142.9 93.3 125.8 104.4 REMARK 620 6 GLY A 604 N 83.8 97.4 81.1 161.8 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 338 OD2 REMARK 620 2 HIS A 417 NE2 91.5 REMARK 620 3 GLU A 444 OE1 157.2 87.5 REMARK 620 4 GLU A 467 OE2 81.7 119.6 79.1 REMARK 620 5 GLY A 604 OXT 97.4 80.0 104.8 160.3 REMARK 620 6 GLY A 604 O 106.2 130.1 91.7 109.1 52.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 604 DBREF 6A9V A 44 511 UNP P40051 ICP55_YEAST 44 511 SEQADV 6A9V GLY A 42 UNP P40051 EXPRESSION TAG SEQADV 6A9V SER A 43 UNP P40051 EXPRESSION TAG SEQRES 1 A 470 GLY SER ALA GLY GLN PRO LEU HIS GLU THR ARG PRO PHE SEQRES 2 A 470 LEU ILE LYS SER GLY GLU LEU THR PRO GLY ILE SER ALA SEQRES 3 A 470 LEU GLU TYR TYR GLU ARG ARG ILE ARG LEU ALA GLU THR SEQRES 4 A 470 LEU PRO PRO LYS SER CYS VAL ILE LEU ALA GLY ASN ASP SEQRES 5 A 470 ILE GLN PHE ALA SER GLY ALA VAL PHE TYR PRO PHE GLN SEQRES 6 A 470 GLN GLU ASN ASP LEU PHE TYR LEU SER GLY TRP ASN GLU SEQRES 7 A 470 PRO ASN SER VAL MET ILE LEU GLU LYS PRO THR ASP SER SEQRES 8 A 470 LEU SER ASP THR ILE PHE HIS MET LEU VAL PRO PRO LYS SEQRES 9 A 470 ASP ALA PHE ALA GLU LYS TRP GLU GLY PHE ARG SER GLY SEQRES 10 A 470 VAL TYR GLY VAL GLN GLU ILE PHE ASN ALA ASP GLU SER SEQRES 11 A 470 ALA SER ILE ASN ASP LEU SER LYS TYR LEU PRO LYS ILE SEQRES 12 A 470 ILE ASN ARG ASN ASP PHE ILE TYR PHE ASP MET LEU SER SEQRES 13 A 470 THR SER ASN PRO SER SER SER ASN PHE LYS HIS ILE LYS SEQRES 14 A 470 SER LEU LEU ASP GLY SER GLY ASN SER ASN ARG SER LEU SEQRES 15 A 470 ASN SER ILE ALA ASN LYS THR ILE LYS PRO ILE SER LYS SEQRES 16 A 470 ARG ILE ALA GLU PHE ARG LYS ILE LYS SER PRO GLN GLU SEQRES 17 A 470 LEU ARG ILE MET ARG ARG ALA GLY GLN ILE SER GLY ARG SEQRES 18 A 470 SER PHE ASN GLN ALA PHE ALA LYS ARG PHE ARG ASN GLU SEQRES 19 A 470 ARG THR LEU ASP SER PHE LEU HIS TYR LYS PHE ILE SER SEQRES 20 A 470 GLY GLY CYS ASP LYS ASP ALA TYR ILE PRO VAL VAL ALA SEQRES 21 A 470 THR GLY SER ASN SER LEU CYS ILE HIS TYR THR ARG ASN SEQRES 22 A 470 ASP ASP VAL MET PHE ASP ASP GLU MET VAL LEU VAL ASP SEQRES 23 A 470 ALA ALA GLY SER LEU GLY GLY TYR CYS ALA ASP ILE SER SEQRES 24 A 470 ARG THR TRP PRO ASN SER GLY LYS PHE THR ASP ALA GLN SEQRES 25 A 470 ARG ASP LEU TYR GLU ALA VAL LEU ASN VAL GLN ARG ASP SEQRES 26 A 470 CYS ILE LYS LEU CYS LYS ALA SER ASN ASN TYR SER LEU SEQRES 27 A 470 HIS ASP ILE HIS GLU LYS SER ILE THR LEU MET LYS GLN SEQRES 28 A 470 GLU LEU LYS ASN LEU GLY ILE ASP LYS VAL SER GLY TRP SEQRES 29 A 470 ASN VAL GLU LYS LEU TYR PRO HIS TYR ILE GLY HIS ASN SEQRES 30 A 470 LEU GLY LEU ASP VAL HIS ASP VAL PRO LYS VAL SER ARG SEQRES 31 A 470 TYR GLU PRO LEU LYS VAL GLY GLN VAL ILE THR ILE GLU SEQRES 32 A 470 PRO GLY LEU TYR ILE PRO ASN GLU GLU SER PHE PRO SER SEQRES 33 A 470 TYR PHE ARG ASN VAL GLY ILE ARG ILE GLU ASP ASP ILE SEQRES 34 A 470 ALA ILE GLY GLU ASP THR TYR THR ASN LEU THR VAL GLU SEQRES 35 A 470 ALA VAL LYS GLU ILE ASP ASP LEU GLU ASN VAL MET GLN SEQRES 36 A 470 ASN GLY LEU SER THR LYS PHE GLU GLU ASP GLN VAL ALA SEQRES 37 A 470 PRO LEU HET MN A 601 1 HET MN A 602 1 HET PGE A 603 10 HET GLY A 604 5 HETNAM MN MANGANESE (II) ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM GLY GLYCINE FORMUL 2 MN 2(MN 2+) FORMUL 4 PGE C6 H14 O4 FORMUL 5 GLY C2 H5 N O2 HELIX 1 AA1 ALA A 67 GLU A 79 1 13 HELIX 2 AA2 GLU A 108 GLY A 116 1 9 HELIX 3 AA3 SER A 132 THR A 136 5 5 HELIX 4 AA4 VAL A 162 PHE A 166 1 5 HELIX 5 AA5 ASP A 176 ARG A 187 1 12 HELIX 6 AA6 SER A 203 LEU A 213 1 11 HELIX 7 AA7 ILE A 234 LYS A 243 1 10 HELIX 8 AA8 SER A 246 ALA A 269 1 24 HELIX 9 AA9 ASN A 274 GLY A 290 1 17 HELIX 10 AB1 SER A 304 CYS A 308 5 5 HELIX 11 AB2 THR A 350 LYS A 369 1 20 HELIX 12 AB3 LEU A 370 CYS A 371 5 2 HELIX 13 AB4 LYS A 372 ASN A 376 5 5 HELIX 14 AB5 SER A 378 LEU A 397 1 20 HELIX 15 AB6 ASN A 406 TYR A 411 1 6 HELIX 16 AB7 PRO A 456 ARG A 460 5 5 HELIX 17 AB8 GLU A 487 GLY A 498 1 12 SHEET 1 AA1 2 GLU A 60 THR A 62 0 SHEET 2 AA1 2 ILE A 65 SER A 66 -1 O ILE A 65 N LEU A 61 SHEET 1 AA2 6 GLU A 170 SER A 173 0 SHEET 2 AA2 6 ILE A 137 VAL A 142 1 N PHE A 138 O GLU A 170 SHEET 3 AA2 6 VAL A 123 LYS A 128 -1 N ILE A 125 O HIS A 139 SHEET 4 AA2 6 SER A 85 ALA A 90 -1 N VAL A 87 O LEU A 126 SHEET 5 AA2 6 PHE A 190 TYR A 192 1 O TYR A 192 N ILE A 88 SHEET 6 AA2 6 ILE A 231 LYS A 232 1 O LYS A 232 N ILE A 191 SHEET 1 AA3 3 LYS A 293 ASP A 294 0 SHEET 2 AA3 3 GLY A 330 LEU A 332 -1 O SER A 331 N LYS A 293 SHEET 3 AA3 3 TYR A 335 CYS A 336 -1 O TYR A 335 N LEU A 332 SHEET 1 AA4 3 VAL A 299 THR A 302 0 SHEET 2 AA4 3 MET A 323 ASP A 327 -1 O LEU A 325 N ALA A 301 SHEET 3 AA4 3 SER A 340 PRO A 344 -1 O ARG A 341 N VAL A 326 SHEET 1 AA5 3 VAL A 440 ILE A 443 0 SHEET 2 AA5 3 ASP A 468 ILE A 472 -1 O ILE A 470 N ILE A 441 SHEET 3 AA5 3 TYR A 477 ASN A 479 -1 O THR A 478 N ALA A 471 SHEET 1 AA6 2 GLY A 446 ILE A 449 0 SHEET 2 AA6 2 VAL A 462 ARG A 465 -1 O ILE A 464 N LEU A 447 LINK OD1 ASP A 327 MN MN A 601 1555 1555 2.35 LINK OD2 ASP A 327 MN MN A 601 1555 1555 2.15 LINK OD1 ASP A 338 MN MN A 601 1555 1555 2.26 LINK OD2 ASP A 338 MN MN A 602 1555 1555 2.17 LINK NE2 HIS A 417 MN MN A 602 1555 1555 2.11 LINK OE1 GLU A 444 MN MN A 602 1555 1555 2.29 LINK OE1 GLU A 467 MN MN A 601 1555 1555 2.15 LINK OE2 GLU A 467 MN MN A 602 1555 1555 2.15 LINK MN MN A 601 O GLY A 604 1555 1555 2.37 LINK MN MN A 601 N GLY A 604 1555 1555 2.57 LINK MN MN A 602 OXT GLY A 604 1555 1555 2.45 LINK MN MN A 602 O GLY A 604 1555 1555 2.36 SITE 1 AC1 6 ASP A 327 ASP A 338 SER A 340 GLU A 467 SITE 2 AC1 6 MN A 602 GLY A 604 SITE 1 AC2 6 ASP A 338 HIS A 417 GLU A 444 GLU A 467 SITE 2 AC2 6 MN A 601 GLY A 604 SITE 1 AC3 2 ILE A 309 GLU A 444 SITE 1 AC4 9 TYR A 296 ASP A 327 ASP A 338 HIS A 417 SITE 2 AC4 9 HIS A 424 GLU A 444 GLU A 467 MN A 601 SITE 3 AC4 9 MN A 602 CRYST1 142.081 142.081 118.731 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007038 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008422 0.00000