HEADER MEMBRANE PROTEIN 18-JUL-18 6AAF TITLE CRYSTAL STRUCTURE OF FISSION YEAST ATG8 COMPLEXED WITH THE HELICAL AIM TITLE 2 OF HFL1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOPHAGY-RELATED UBIQUITIN-LIKE MODIFIER ATG8; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSMEMBRANE PROTEIN 184 HOMOLOG C30D11.06C; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HFL1(386-409); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: ATG8, SPBP8B7.24C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 13 24843); SOURCE 14 ORGANISM_COMMON: FISSION YEAST; SOURCE 15 ORGANISM_TAXID: 284812; SOURCE 16 STRAIN: 972 / ATCC 24843; SOURCE 17 GENE: SPAC30D11.06C; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS VACUOLE, AUTOPHAGY, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMASAKI,N.N.NODA REVDAT 2 22-NOV-23 6AAF 1 REMARK REVDAT 1 12-DEC-18 6AAF 0 JRNL AUTH X.M.LIU,A.YAMASAKI,X.M.DU,V.C.COFFMAN,Y.OHSUMI,H.NAKATOGAWA, JRNL AUTH 2 J.Q.WU,N.N.NODA,L.L.DU JRNL TITL LIPIDATION-INDEPENDENT VACUOLAR FUNCTIONS OF ATG8 RELY ON JRNL TITL 2 ITS NONCANONICAL INTERACTION WITH A VACUOLE MEMBRANE PROTEIN JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 30451685 JRNL DOI 10.7554/ELIFE.41237 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 7038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1245 - 3.7550 1.00 1358 149 0.1624 0.1945 REMARK 3 2 3.7550 - 2.9809 1.00 1274 141 0.2224 0.2898 REMARK 3 3 2.9809 - 2.6043 1.00 1250 134 0.2788 0.3478 REMARK 3 4 2.6043 - 2.3662 0.99 1226 147 0.3259 0.4202 REMARK 3 5 2.3662 - 2.1966 0.99 1228 131 0.3781 0.4715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1107 REMARK 3 ANGLE : 0.730 1490 REMARK 3 CHIRALITY : 0.030 163 REMARK 3 PLANARITY : 0.003 190 REMARK 3 DIHEDRAL : 14.370 424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1443 19.0320 17.3627 REMARK 3 T TENSOR REMARK 3 T11: 0.5936 T22: 0.6859 REMARK 3 T33: 0.7561 T12: 0.0568 REMARK 3 T13: -0.0535 T23: 0.1447 REMARK 3 L TENSOR REMARK 3 L11: 1.4345 L22: 1.9969 REMARK 3 L33: 2.1580 L12: 0.7296 REMARK 3 L13: -1.8038 L23: -0.6033 REMARK 3 S TENSOR REMARK 3 S11: -0.3465 S12: -1.8681 S13: -0.8969 REMARK 3 S21: 0.7288 S22: 0.1958 S23: -2.1966 REMARK 3 S31: 0.9218 S32: 1.0923 S33: 0.2389 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1767 26.8964 6.1932 REMARK 3 T TENSOR REMARK 3 T11: 0.5778 T22: 0.6461 REMARK 3 T33: 0.7315 T12: -0.1032 REMARK 3 T13: 0.0861 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 8.2107 L22: 8.2943 REMARK 3 L33: 2.9141 L12: 3.5907 REMARK 3 L13: 2.2164 L23: -0.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.1884 S12: 1.0090 S13: 0.4402 REMARK 3 S21: -0.7542 S22: 0.5932 S23: -0.5071 REMARK 3 S31: -0.6469 S32: 0.6646 S33: 0.0242 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0155 17.4944 6.2073 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.4648 REMARK 3 T33: 0.4818 T12: 0.0296 REMARK 3 T13: -0.0266 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 9.1166 L22: 4.7620 REMARK 3 L33: 5.6065 L12: 2.9746 REMARK 3 L13: -0.3610 L23: 1.9044 REMARK 3 S TENSOR REMARK 3 S11: -0.1935 S12: 0.7253 S13: -0.3510 REMARK 3 S21: -0.8708 S22: 0.5722 S23: -0.0596 REMARK 3 S31: 0.7821 S32: -0.0221 S33: 0.0820 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0766 8.5213 9.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.4856 T22: 0.5184 REMARK 3 T33: 0.5484 T12: 0.0904 REMARK 3 T13: 0.0426 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 8.6989 L22: 8.8009 REMARK 3 L33: 3.5927 L12: 3.3379 REMARK 3 L13: -0.5896 L23: -0.5895 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: 0.1583 S13: -1.4858 REMARK 3 S21: -0.4512 S22: 0.0622 S23: -0.4154 REMARK 3 S31: 0.9187 S32: 0.5674 S33: -0.0009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4146 1.6589 14.7158 REMARK 3 T TENSOR REMARK 3 T11: 0.7620 T22: 0.4936 REMARK 3 T33: 0.9897 T12: 0.0111 REMARK 3 T13: 0.0145 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 7.1150 L22: 2.4061 REMARK 3 L33: 5.0806 L12: 4.1031 REMARK 3 L13: 1.4631 L23: 0.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.2458 S12: -0.0122 S13: -1.3695 REMARK 3 S21: 0.0022 S22: 0.5711 S23: -1.3975 REMARK 3 S31: 0.9845 S32: 0.4876 S33: 0.0236 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5883 19.8905 12.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.4509 REMARK 3 T33: 0.5449 T12: 0.0347 REMARK 3 T13: -0.0113 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 8.5734 L22: 7.9132 REMARK 3 L33: 6.9019 L12: 1.9803 REMARK 3 L13: 0.0177 L23: 0.0562 REMARK 3 S TENSOR REMARK 3 S11: 0.2109 S12: 0.2202 S13: 0.2686 REMARK 3 S21: 0.0395 S22: -0.2109 S23: 0.9228 REMARK 3 S31: 0.0686 S32: -0.3527 S33: -0.0823 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0603 26.0116 13.0665 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.5197 REMARK 3 T33: 0.6374 T12: -0.0312 REMARK 3 T13: 0.0003 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.6655 L22: 2.5950 REMARK 3 L33: 6.8530 L12: -0.7679 REMARK 3 L13: -3.0707 L23: -1.7524 REMARK 3 S TENSOR REMARK 3 S11: -0.7756 S12: -1.5689 S13: 0.2054 REMARK 3 S21: 1.3841 S22: 0.3770 S23: -0.2626 REMARK 3 S31: -0.1819 S32: 0.5791 S33: 0.0483 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9048 10.9743 17.8019 REMARK 3 T TENSOR REMARK 3 T11: 0.4494 T22: 0.5105 REMARK 3 T33: 0.8138 T12: 0.0295 REMARK 3 T13: -0.0889 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 0.6341 L22: 2.2445 REMARK 3 L33: 2.2702 L12: -0.6927 REMARK 3 L13: 0.1505 L23: 1.5562 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.7890 S13: -0.5810 REMARK 3 S21: 0.6981 S22: -0.5280 S23: 0.6557 REMARK 3 S31: 0.8998 S32: 0.4823 S33: 0.2831 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 386 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6576 15.8234 1.7524 REMARK 3 T TENSOR REMARK 3 T11: 1.1640 T22: 1.1753 REMARK 3 T33: 1.5137 T12: 0.0415 REMARK 3 T13: 0.3556 T23: -0.5232 REMARK 3 L TENSOR REMARK 3 L11: 0.7079 L22: 8.7932 REMARK 3 L33: 5.9845 L12: 1.5715 REMARK 3 L13: 2.1047 L23: 3.8001 REMARK 3 S TENSOR REMARK 3 S11: -1.1333 S12: 2.8771 S13: -1.7322 REMARK 3 S21: 0.4235 S22: 1.2650 S23: -3.3716 REMARK 3 S31: 1.3112 S32: 0.8012 S33: -0.4684 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 392 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4942 7.8418 -0.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.8974 T22: 0.9002 REMARK 3 T33: 0.7584 T12: -0.1497 REMARK 3 T13: 0.0375 T23: -0.1494 REMARK 3 L TENSOR REMARK 3 L11: 2.1873 L22: 9.6770 REMARK 3 L33: 9.3442 L12: 2.4258 REMARK 3 L13: -1.4234 L23: -1.5422 REMARK 3 S TENSOR REMARK 3 S11: 0.9276 S12: 0.5043 S13: -1.3277 REMARK 3 S21: -1.7315 S22: 0.0999 S23: -1.2172 REMARK 3 S31: 0.5278 S32: -1.1137 S33: 0.0177 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.197 REMARK 200 RESOLUTION RANGE LOW (A) : 35.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2ZPN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% PEG8000, 0.2 M SODIUM ACETATE, REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 16.89900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.43300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.89900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.43300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 114 REMARK 465 PHE A 115 REMARK 465 GLY A 116 REMARK 465 MET B 385 REMARK 465 ASP B 408 REMARK 465 TYR B 409 REMARK 465 LEU B 410 REMARK 465 GLU B 411 REMARK 465 VAL B 412 REMARK 465 LEU B 413 REMARK 465 PHE B 414 REMARK 465 GLN B 415 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 GLN B 387 CG CD OE1 NE2 REMARK 470 ARG B 405 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 41 -173.97 -67.82 REMARK 500 ILE A 44 -166.50 -109.29 REMARK 500 PRO A 72 -8.43 -59.52 REMARK 500 TYR B 406 -124.77 -122.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 6AAF A 1 116 UNP O94272 ATG8_SCHPO 1 116 DBREF 6AAF B 386 409 UNP Q09906 TM184_SCHPO 386 409 SEQADV 6AAF GLY A -2 UNP O94272 EXPRESSION TAG SEQADV 6AAF PRO A -1 UNP O94272 EXPRESSION TAG SEQADV 6AAF HIS A 0 UNP O94272 EXPRESSION TAG SEQADV 6AAF MET B 385 UNP Q09906 INITIATING METHIONINE SEQADV 6AAF LEU B 410 UNP Q09906 EXPRESSION TAG SEQADV 6AAF GLU B 411 UNP Q09906 EXPRESSION TAG SEQADV 6AAF VAL B 412 UNP Q09906 EXPRESSION TAG SEQADV 6AAF LEU B 413 UNP Q09906 EXPRESSION TAG SEQADV 6AAF PHE B 414 UNP Q09906 EXPRESSION TAG SEQADV 6AAF GLN B 415 UNP Q09906 EXPRESSION TAG SEQRES 1 A 119 GLY PRO HIS MET ARG SER GLN PHE LYS ASP ASP PHE SER SEQRES 2 A 119 PHE GLU LYS ARG LYS THR GLU SER GLN ARG ILE ARG GLU SEQRES 3 A 119 LYS TYR PRO ASP ARG ILE PRO VAL ILE CYS GLU LYS VAL SEQRES 4 A 119 ASP LYS SER ASP ILE ALA ALA ILE ASP LYS LYS LYS TYR SEQRES 5 A 119 LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE VAL TYR SEQRES 6 A 119 VAL ILE ARG LYS ARG ILE LYS LEU SER PRO GLU LYS ALA SEQRES 7 A 119 ILE PHE ILE PHE ILE ASP GLU ILE LEU PRO PRO THR ALA SEQRES 8 A 119 ALA LEU MET SER THR ILE TYR GLU GLU HIS LYS SER GLU SEQRES 9 A 119 ASP GLY PHE LEU TYR ILE THR TYR SER GLY GLU ASN THR SEQRES 10 A 119 PHE GLY SEQRES 1 B 31 MET LEU GLN PHE GLU ILE ASP ASP GLU MET GLU PRO LEU SEQRES 2 B 31 TYR ASN GLN ALA LYS GLN MET ARG TYR GLY ASP TYR LEU SEQRES 3 B 31 GLU VAL LEU PHE GLN FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 SER A 3 PHE A 9 1 7 HELIX 2 AA2 SER A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 LYS A 69 1 14 HELIX 4 AA4 LEU A 90 LYS A 99 1 10 HELIX 5 AA5 MET B 394 MET B 404 1 11 SHEET 1 AA1 4 LYS A 48 PRO A 52 0 SHEET 2 AA1 4 ARG A 28 LYS A 35 -1 N VAL A 31 O TYR A 49 SHEET 3 AA1 4 LEU A 105 SER A 110 1 O ILE A 107 N ILE A 32 SHEET 4 AA1 4 PHE A 77 PHE A 79 -1 N PHE A 79 O THR A 108 CRYST1 33.798 108.866 35.120 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029588 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028474 0.00000