HEADER TRANSFERASE/RNA 19-JUL-18 6AAX TITLE CRYSTAL STRUCTURE OF TFB1M AND H45 WITH SAM IN HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLADENOSINE TRANSFERASE 1, MITOCHONDRIAL; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: MITOCHONDRIAL 12S RRNA DIMETHYLASE 1,MITOCHONDRIAL COMPND 5 TRANSCRIPTION FACTOR B1,MTTFB1,S-ADENOSYLMETHIONINE-6-N',N'- COMPND 6 ADENOSYL(RRNA) DIMETHYLTRANSFERASE 1; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (28-MER); COMPND 11 CHAIN: B, D; COMPND 12 SYNONYM: HELIX 45 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TFB1M, CGI-75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS TFB1M, H45, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,S.SHEN,P.WU,F.LI,Q.GONG,J.WU,H.ZHANG,Y.SHI REVDAT 3 22-NOV-23 6AAX 1 REMARK REVDAT 2 18-DEC-19 6AAX 1 JRNL REVDAT 1 05-JUN-19 6AAX 0 JRNL AUTH X.LIU,S.SHEN,P.WU,F.LI,X.LIU,C.WANG,Q.GONG,J.WU,X.YAO, JRNL AUTH 2 H.ZHANG,Y.SHI JRNL TITL STRUCTURAL INSIGHTS INTO DIMETHYLATION OF 12S RRNA BY TFB1M: JRNL TITL 2 INDISPENSABLE ROLE IN TRANSLATION OF MITOCHONDRIAL GENES AND JRNL TITL 3 MITOCHONDRIAL FUNCTION. JRNL REF NUCLEIC ACIDS RES. V. 47 7648 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31251801 JRNL DOI 10.1093/NAR/GKZ505 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6299 - 6.6478 0.99 2882 156 0.2070 0.2512 REMARK 3 2 6.6478 - 5.2809 1.00 2713 115 0.2262 0.2723 REMARK 3 3 5.2809 - 4.6146 1.00 2652 139 0.1862 0.1903 REMARK 3 4 4.6146 - 4.1932 1.00 2611 136 0.1824 0.2196 REMARK 3 5 4.1932 - 3.8930 1.00 2627 121 0.2063 0.2811 REMARK 3 6 3.8930 - 3.6636 1.00 2582 124 0.2311 0.2858 REMARK 3 7 3.6636 - 3.4803 1.00 2526 152 0.2483 0.3169 REMARK 3 8 3.4803 - 3.3289 1.00 2581 135 0.2524 0.3417 REMARK 3 9 3.3289 - 3.2008 1.00 2565 127 0.2720 0.3105 REMARK 3 10 3.2008 - 3.0904 1.00 2556 117 0.2736 0.3467 REMARK 3 11 3.0904 - 2.9938 0.99 2500 151 0.3255 0.3796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5980 REMARK 3 ANGLE : 1.208 8408 REMARK 3 CHIRALITY : 0.057 1010 REMARK 3 PLANARITY : 0.007 873 REMARK 3 DIHEDRAL : 10.168 3467 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.6772 31.3920 -23.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.4985 T22: 0.6540 REMARK 3 T33: 0.6787 T12: 0.1105 REMARK 3 T13: 0.1448 T23: 0.4231 REMARK 3 L TENSOR REMARK 3 L11: 0.0788 L22: 0.4738 REMARK 3 L33: 0.5593 L12: -0.0481 REMARK 3 L13: 0.1496 L23: -0.2713 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.1086 S13: -0.0845 REMARK 3 S21: 0.1608 S22: -0.0112 S23: -0.0519 REMARK 3 S31: 0.0971 S32: -0.0126 S33: 0.1490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30398 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 42.00 REMARK 200 R MERGE (I) : 0.22200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 43.00 REMARK 200 R MERGE FOR SHELL (I) : 0.96800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CHLORIDE, 0.025M REMARK 280 MAGNESIUM SULFATE HYDRATE, 0.05M HEPES SODIUM, PH 7.0, 20% V/V REMARK 280 POLYETHYLENE GLYCOL 200, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.79267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 299.58533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 224.68900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 374.48167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.89633 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 149.79267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 299.58533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 374.48167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 224.68900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.89633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 LEU A 33 REMARK 465 SER A 34 REMARK 465 GLU A 325 REMARK 465 LEU A 326 REMARK 465 LYS A 327 REMARK 465 ARG A 328 REMARK 465 ARG A 329 REMARK 465 LYS A 330 REMARK 465 SER A 331 REMARK 465 LYS A 332 REMARK 465 ASN A 333 REMARK 465 GLU A 334 REMARK 465 GLU A 335 REMARK 465 LYS A 336 REMARK 465 GLU A 337 REMARK 465 GLU A 338 REMARK 465 ASP A 339 REMARK 465 ASP A 340 REMARK 465 ALA A 341 REMARK 465 GLU A 342 REMARK 465 ASN A 343 REMARK 465 TYR A 344 REMARK 465 ARG A 345 REMARK 465 LEU A 346 REMARK 465 GLN C 28 REMARK 465 ALA C 29 REMARK 465 ALA C 30 REMARK 465 LYS C 31 REMARK 465 GLN C 32 REMARK 465 LEU C 33 REMARK 465 LEU C 326 REMARK 465 LYS C 327 REMARK 465 ARG C 328 REMARK 465 ARG C 329 REMARK 465 LYS C 330 REMARK 465 SER C 331 REMARK 465 LYS C 332 REMARK 465 ASN C 333 REMARK 465 GLU C 334 REMARK 465 GLU C 335 REMARK 465 LYS C 336 REMARK 465 GLU C 337 REMARK 465 GLU C 338 REMARK 465 ASP C 339 REMARK 465 ASP C 340 REMARK 465 ALA C 341 REMARK 465 GLU C 342 REMARK 465 ASN C 343 REMARK 465 TYR C 344 REMARK 465 ARG C 345 REMARK 465 LEU C 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ASP A 77 CG OD1 OD2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 SER A 296 OG REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 SER C 34 OG REMARK 470 GLN C 35 CG CD OE1 NE2 REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 56 CG OD1 ND2 REMARK 470 LYS C 86 CG CD CE NZ REMARK 470 THR C 114 OG1 CG2 REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 VAL C 117 CG1 CG2 REMARK 470 SER C 122 OG REMARK 470 SER C 124 OG REMARK 470 LEU C 125 CG CD1 CD2 REMARK 470 ARG C 127 CG CD NE CZ NH1 NH2 REMARK 470 TRP C 129 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 129 CZ3 CH2 REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 470 ASN C 135 CG OD1 ND2 REMARK 470 LYS C 153 CG CD CE NZ REMARK 470 ARG C 161 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 167 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 191 CG CD CE NZ REMARK 470 ARG C 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 215 CG CD OE1 NE2 REMARK 470 GLU C 239 CG CD OE1 OE2 REMARK 470 GLN C 240 CG CD OE1 NE2 REMARK 470 LYS C 243 CG CD CE NZ REMARK 470 LEU C 244 CG CD1 CD2 REMARK 470 ARG C 257 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 258 CG CD CE NZ REMARK 470 GLU C 275 CG CD OE1 OE2 REMARK 470 ARG C 279 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 309 CG CD CE NZ REMARK 470 GLU C 324 CG CD OE1 OE2 REMARK 470 GLU C 325 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 934 O5' - P - OP1 ANGL. DEV. = 8.9 DEGREES REMARK 500 A D 937 C8 - N9 - C4 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 131 -161.30 -71.40 REMARK 500 ASN A 135 29.87 -76.81 REMARK 500 ASP A 162 -165.03 -105.65 REMARK 500 ARG A 169 30.12 70.56 REMARK 500 LYS A 178 -47.00 -29.70 REMARK 500 SER A 194 -161.75 -122.46 REMARK 500 PHE A 210 147.48 -179.51 REMARK 500 GLU A 222 33.62 -80.99 REMARK 500 ARG A 265 -24.22 -37.16 REMARK 500 ASP A 285 64.05 65.53 REMARK 500 ALA C 101 96.90 -166.78 REMARK 500 LYS C 104 30.16 -154.92 REMARK 500 VAL C 117 42.94 -76.29 REMARK 500 GLU C 118 52.63 -118.46 REMARK 500 ALA C 120 45.69 -108.61 REMARK 500 PRO C 128 156.01 -44.62 REMARK 500 PRO C 134 173.84 -59.53 REMARK 500 GLU C 222 32.63 -77.85 REMARK 500 PRO C 236 -153.68 -70.64 REMARK 500 TYR C 259 157.26 -47.86 REMARK 500 MET C 266 3.14 -67.70 REMARK 500 ASP C 314 117.89 -174.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 174 THR A 175 -145.06 REMARK 500 THR C 114 PHE C 115 149.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM C 401 DBREF 6AAX A 28 346 UNP Q8WVM0 TFB1M_HUMAN 28 346 DBREF 6AAX B 922 949 PDB 6AAX 6AAX 922 949 DBREF 6AAX C 28 346 UNP Q8WVM0 TFB1M_HUMAN 28 346 DBREF 6AAX D 922 949 PDB 6AAX 6AAX 922 949 SEQRES 1 A 319 GLN ALA ALA LYS GLN LEU SER GLN ASN PHE LEU LEU ASP SEQRES 2 A 319 LEU ARG LEU THR ASP LYS ILE VAL ARG LYS ALA GLY ASN SEQRES 3 A 319 LEU THR ASN ALA TYR VAL TYR GLU VAL GLY PRO GLY PRO SEQRES 4 A 319 GLY GLY ILE THR ARG SER ILE LEU ASN ALA ASP VAL ALA SEQRES 5 A 319 GLU LEU LEU VAL VAL GLU LYS ASP THR ARG PHE ILE PRO SEQRES 6 A 319 GLY LEU GLN MET LEU SER ASP ALA ALA PRO GLY LYS LEU SEQRES 7 A 319 ARG ILE VAL HIS GLY ASP VAL LEU THR PHE LYS VAL GLU SEQRES 8 A 319 LYS ALA PHE SER GLU SER LEU LYS ARG PRO TRP GLU ASP SEQRES 9 A 319 ASP PRO PRO ASN VAL HIS ILE ILE GLY ASN LEU PRO PHE SEQRES 10 A 319 SER VAL SER THR PRO LEU ILE ILE LYS TRP LEU GLU ASN SEQRES 11 A 319 ILE SER CYS ARG ASP GLY PRO PHE VAL TYR GLY ARG THR SEQRES 12 A 319 GLN MET THR LEU THR PHE GLN LYS GLU VAL ALA GLU ARG SEQRES 13 A 319 LEU ALA ALA ASN THR GLY SER LYS GLN ARG SER ARG LEU SEQRES 14 A 319 SER VAL MET ALA GLN TYR LEU CYS ASN VAL ARG HIS ILE SEQRES 15 A 319 PHE THR ILE PRO GLY GLN ALA PHE VAL PRO LYS PRO GLU SEQRES 16 A 319 VAL ASP VAL GLY VAL VAL HIS PHE THR PRO LEU ILE GLN SEQRES 17 A 319 PRO LYS ILE GLU GLN PRO PHE LYS LEU VAL GLU LYS VAL SEQRES 18 A 319 VAL GLN ASN VAL PHE GLN PHE ARG ARG LYS TYR CYS HIS SEQRES 19 A 319 ARG GLY LEU ARG MET LEU PHE PRO GLU ALA GLN ARG LEU SEQRES 20 A 319 GLU SER THR GLY ARG LEU LEU GLU LEU ALA ASP ILE ASP SEQRES 21 A 319 PRO THR LEU ARG PRO ARG GLN LEU SER ILE SER HIS PHE SEQRES 22 A 319 LYS SER LEU CYS ASP VAL TYR ARG LYS MET CYS ASP GLU SEQRES 23 A 319 ASP PRO GLN LEU PHE ALA TYR ASN PHE ARG GLU GLU LEU SEQRES 24 A 319 LYS ARG ARG LYS SER LYS ASN GLU GLU LYS GLU GLU ASP SEQRES 25 A 319 ASP ALA GLU ASN TYR ARG LEU SEQRES 1 B 28 G G U A A G U G U A C U G SEQRES 2 B 28 G A A A G U G C A C U U G SEQRES 3 B 28 C C SEQRES 1 C 319 GLN ALA ALA LYS GLN LEU SER GLN ASN PHE LEU LEU ASP SEQRES 2 C 319 LEU ARG LEU THR ASP LYS ILE VAL ARG LYS ALA GLY ASN SEQRES 3 C 319 LEU THR ASN ALA TYR VAL TYR GLU VAL GLY PRO GLY PRO SEQRES 4 C 319 GLY GLY ILE THR ARG SER ILE LEU ASN ALA ASP VAL ALA SEQRES 5 C 319 GLU LEU LEU VAL VAL GLU LYS ASP THR ARG PHE ILE PRO SEQRES 6 C 319 GLY LEU GLN MET LEU SER ASP ALA ALA PRO GLY LYS LEU SEQRES 7 C 319 ARG ILE VAL HIS GLY ASP VAL LEU THR PHE LYS VAL GLU SEQRES 8 C 319 LYS ALA PHE SER GLU SER LEU LYS ARG PRO TRP GLU ASP SEQRES 9 C 319 ASP PRO PRO ASN VAL HIS ILE ILE GLY ASN LEU PRO PHE SEQRES 10 C 319 SER VAL SER THR PRO LEU ILE ILE LYS TRP LEU GLU ASN SEQRES 11 C 319 ILE SER CYS ARG ASP GLY PRO PHE VAL TYR GLY ARG THR SEQRES 12 C 319 GLN MET THR LEU THR PHE GLN LYS GLU VAL ALA GLU ARG SEQRES 13 C 319 LEU ALA ALA ASN THR GLY SER LYS GLN ARG SER ARG LEU SEQRES 14 C 319 SER VAL MET ALA GLN TYR LEU CYS ASN VAL ARG HIS ILE SEQRES 15 C 319 PHE THR ILE PRO GLY GLN ALA PHE VAL PRO LYS PRO GLU SEQRES 16 C 319 VAL ASP VAL GLY VAL VAL HIS PHE THR PRO LEU ILE GLN SEQRES 17 C 319 PRO LYS ILE GLU GLN PRO PHE LYS LEU VAL GLU LYS VAL SEQRES 18 C 319 VAL GLN ASN VAL PHE GLN PHE ARG ARG LYS TYR CYS HIS SEQRES 19 C 319 ARG GLY LEU ARG MET LEU PHE PRO GLU ALA GLN ARG LEU SEQRES 20 C 319 GLU SER THR GLY ARG LEU LEU GLU LEU ALA ASP ILE ASP SEQRES 21 C 319 PRO THR LEU ARG PRO ARG GLN LEU SER ILE SER HIS PHE SEQRES 22 C 319 LYS SER LEU CYS ASP VAL TYR ARG LYS MET CYS ASP GLU SEQRES 23 C 319 ASP PRO GLN LEU PHE ALA TYR ASN PHE ARG GLU GLU LEU SEQRES 24 C 319 LYS ARG ARG LYS SER LYS ASN GLU GLU LYS GLU GLU ASP SEQRES 25 C 319 ASP ALA GLU ASN TYR ARG LEU SEQRES 1 D 28 G G U A A G U G U A C U G SEQRES 2 D 28 G A A A G U G C A C U U G SEQRES 3 D 28 C C HET SAM A 401 27 HET PEG A 402 7 HET SAM C 401 27 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 SAM 2(C15 H22 N6 O5 S) FORMUL 6 PEG C4 H10 O3 HELIX 1 AA1 ASP A 40 ALA A 51 1 12 HELIX 2 AA2 GLY A 67 ASN A 75 1 9 HELIX 3 AA3 ASP A 87 ARG A 89 5 3 HELIX 4 AA4 PHE A 90 ALA A 100 1 11 HELIX 5 AA5 LYS A 116 ALA A 120 5 5 HELIX 6 AA6 SER A 122 LYS A 126 5 5 HELIX 7 AA7 PRO A 143 CYS A 160 1 18 HELIX 8 AA8 ASP A 162 GLY A 168 5 7 HELIX 9 AA9 LYS A 178 ALA A 186 1 9 HELIX 10 AB1 SER A 194 TYR A 202 1 9 HELIX 11 AB2 PRO A 213 PHE A 217 5 5 HELIX 12 AB3 PRO A 241 PHE A 253 1 13 HELIX 13 AB4 CYS A 260 ARG A 265 1 6 HELIX 14 AB5 MET A 266 PHE A 268 5 3 HELIX 15 AB6 PRO A 269 ASP A 285 1 17 HELIX 16 AB7 ARG A 291 LEU A 295 5 5 HELIX 17 AB8 SER A 296 GLU A 313 1 18 HELIX 18 AB9 ASP A 314 PHE A 318 5 5 HELIX 19 AC1 ASP C 40 LYS C 50 1 11 HELIX 20 AC2 GLY C 67 ILE C 73 1 7 HELIX 21 AC3 ASP C 87 ARG C 89 5 3 HELIX 22 AC4 PHE C 90 ALA C 100 1 11 HELIX 23 AC5 SER C 122 LYS C 126 5 5 HELIX 24 AC6 PRO C 143 ARG C 161 1 19 HELIX 25 AC7 ASP C 162 VAL C 166 5 5 HELIX 26 AC8 LYS C 178 ALA C 186 1 9 HELIX 27 AC9 SER C 194 TYR C 202 1 9 HELIX 28 AD1 PRO C 213 PHE C 217 5 5 HELIX 29 AD2 PRO C 241 PHE C 253 1 13 HELIX 30 AD3 TYR C 259 ARG C 265 1 7 HELIX 31 AD4 MET C 266 PHE C 268 5 3 HELIX 32 AD5 PRO C 269 LEU C 274 1 6 HELIX 33 AD6 GLU C 275 LEU C 283 1 9 HELIX 34 AD7 ARG C 291 LEU C 295 5 5 HELIX 35 AD8 SER C 296 GLU C 313 1 18 SHEET 1 AA1 7 LEU A 105 HIS A 109 0 SHEET 2 AA1 7 GLU A 80 GLU A 85 1 N VAL A 83 O VAL A 108 SHEET 3 AA1 7 TYR A 58 VAL A 62 1 N VAL A 59 O LEU A 82 SHEET 4 AA1 7 VAL A 136 GLY A 140 1 O HIS A 137 N TYR A 60 SHEET 5 AA1 7 GLN A 171 GLN A 177 1 O GLN A 171 N ILE A 138 SHEET 6 AA1 7 VAL A 225 PRO A 232 -1 O GLY A 226 N PHE A 176 SHEET 7 AA1 7 CYS A 204 ILE A 212 -1 N ILE A 212 O VAL A 225 SHEET 1 AA2 7 ARG C 106 HIS C 109 0 SHEET 2 AA2 7 GLU C 80 GLU C 85 1 N LEU C 81 O ARG C 106 SHEET 3 AA2 7 TYR C 58 VAL C 62 1 N VAL C 59 O LEU C 82 SHEET 4 AA2 7 VAL C 136 GLY C 140 1 O HIS C 137 N TYR C 60 SHEET 5 AA2 7 GLN C 171 GLN C 177 1 O THR C 173 N ILE C 138 SHEET 6 AA2 7 VAL C 225 PRO C 232 -1 O VAL C 228 N LEU C 174 SHEET 7 AA2 7 CYS C 204 ILE C 212 -1 N ILE C 212 O VAL C 225 CISPEP 1 VAL A 218 PRO A 219 0 -9.46 CISPEP 2 GLU C 118 LYS C 119 0 2.83 CISPEP 3 VAL C 218 PRO C 219 0 -6.24 CISPEP 4 ILE C 234 GLN C 235 0 19.53 SITE 1 AC1 16 ASN A 36 PHE A 37 LEU A 38 GLY A 63 SITE 2 AC1 16 PRO A 64 GLY A 65 GLU A 85 LYS A 86 SITE 3 AC1 16 PHE A 90 GLY A 110 ASP A 111 VAL A 112 SITE 4 AC1 16 ASN A 141 LEU A 142 PRO A 143 VAL A 146 SITE 1 AC2 4 PRO A 66 ARG A 71 GLY A 93 LEU C 39 SITE 1 AC3 17 ASN C 36 PHE C 37 LEU C 38 GLY C 63 SITE 2 AC3 17 PRO C 64 PRO C 66 GLY C 68 ILE C 69 SITE 3 AC3 17 GLU C 85 LYS C 86 PHE C 90 GLY C 110 SITE 4 AC3 17 ASP C 111 VAL C 112 ASN C 141 PRO C 143 SITE 5 AC3 17 VAL C 146 CRYST1 104.120 104.120 449.378 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009604 0.005545 0.000000 0.00000 SCALE2 0.000000 0.011090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002225 0.00000