HEADER DNA BINDING PROTEIN 23-JUL-18 6ABT TITLE CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR FROM LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PADR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: C7K50_07245, CDR86_13565, LMNIHS28_00834; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BACTERIA, PADR, TRANSCRIPTION FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.LEE,M.HONG REVDAT 2 22-NOV-23 6ABT 1 REMARK REVDAT 1 05-JUN-19 6ABT 0 JRNL AUTH C.LEE,M.I.KIM,J.PARK,M.HONG JRNL TITL STRUCTURE-BASED MOLECULAR CHARACTERIZATION AND REGULATORY JRNL TITL 2 MECHANISM OF THE LFTR TRANSCRIPTION FACTOR FROM LISTERIA JRNL TITL 3 MONOCYTOGENES: CONFORMATIONAL FLEXIBILITIES AND A JRNL TITL 4 LIGAND-INDUCED REGULATORY MECHANISM. JRNL REF PLOS ONE V. 14 15017 2019 JRNL REFN ESSN 1932-6203 JRNL PMID 30970033 JRNL DOI 10.1371/JOURNAL.PONE.0215017 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.23000 REMARK 3 B22 (A**2) : 6.23000 REMARK 3 B33 (A**2) : -20.21000 REMARK 3 B12 (A**2) : 3.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.438 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.401 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1556 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2099 ; 1.627 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 6.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;38.201 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;22.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1139 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3100 -17.4720 0.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.5454 T22: 0.8575 REMARK 3 T33: 0.9676 T12: -0.0922 REMARK 3 T13: -0.0630 T23: -0.2014 REMARK 3 L TENSOR REMARK 3 L11: 9.4428 L22: 11.8835 REMARK 3 L33: 39.6851 L12: -0.3650 REMARK 3 L13: -7.1317 L23: -19.8924 REMARK 3 S TENSOR REMARK 3 S11: 0.3884 S12: -0.9455 S13: 0.6264 REMARK 3 S21: 0.2562 S22: 0.7447 S23: 0.3713 REMARK 3 S31: -0.7778 S32: -0.3481 S33: -1.1331 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2960 -27.3500 8.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.3777 REMARK 3 T33: 0.9964 T12: -0.2302 REMARK 3 T13: 0.1612 T23: -0.0857 REMARK 3 L TENSOR REMARK 3 L11: 4.6323 L22: 3.7849 REMARK 3 L33: 9.1144 L12: 2.7773 REMARK 3 L13: 4.0409 L23: 5.0309 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 0.7181 S13: -0.6162 REMARK 3 S21: 0.6301 S22: -0.1614 S23: -0.0685 REMARK 3 S31: 1.2206 S32: -0.4083 S33: 0.2448 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3000 -18.4860 12.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.2884 REMARK 3 T33: 0.8592 T12: -0.0262 REMARK 3 T13: 0.0472 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 5.5110 L22: 5.0266 REMARK 3 L33: 6.4562 L12: 1.1282 REMARK 3 L13: -1.0678 L23: 1.4359 REMARK 3 S TENSOR REMARK 3 S11: -0.3213 S12: 0.1567 S13: 0.1808 REMARK 3 S21: -0.3848 S22: 0.4537 S23: -0.1337 REMARK 3 S31: -1.1574 S32: -0.1797 S33: -0.1324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6180 -22.2490 13.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1424 REMARK 3 T33: 0.7999 T12: 0.0256 REMARK 3 T13: 0.0563 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 9.0509 L22: 3.0655 REMARK 3 L33: 3.5580 L12: -0.4726 REMARK 3 L13: 4.4770 L23: 0.2967 REMARK 3 S TENSOR REMARK 3 S11: -0.4175 S12: -0.1998 S13: -0.0546 REMARK 3 S21: -0.3171 S22: 0.1251 S23: 0.0816 REMARK 3 S31: -0.5951 S32: -0.0739 S33: 0.2925 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4970 -22.4500 -5.9440 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.2527 REMARK 3 T33: 0.9143 T12: 0.0887 REMARK 3 T13: 0.0356 T23: 0.1105 REMARK 3 L TENSOR REMARK 3 L11: 11.4136 L22: 2.8060 REMARK 3 L33: 55.8744 L12: 3.5546 REMARK 3 L13: 3.6550 L23: 10.7522 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: 0.3997 S13: 0.3812 REMARK 3 S21: -0.1617 S22: -0.2743 S23: 0.0990 REMARK 3 S31: -0.6297 S32: -1.9835 S33: 0.4555 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 14 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9820 -12.9300 -11.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.8080 T22: 0.7039 REMARK 3 T33: 1.1028 T12: -0.1543 REMARK 3 T13: 0.0398 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 23.6734 L22: 30.6319 REMARK 3 L33: 48.4458 L12: -10.0302 REMARK 3 L13: 1.8391 L23: 34.9180 REMARK 3 S TENSOR REMARK 3 S11: 0.3052 S12: 0.5658 S13: 0.9996 REMARK 3 S21: -0.1239 S22: 0.0395 S23: -0.7392 REMARK 3 S31: -0.0011 S32: 0.4414 S33: -0.3447 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3180 -12.4090 -18.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.7356 T22: 0.4763 REMARK 3 T33: 1.1197 T12: -0.1149 REMARK 3 T13: 0.1254 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 7.7439 L22: 6.2537 REMARK 3 L33: 5.8024 L12: -5.4957 REMARK 3 L13: -5.5010 L23: 4.6540 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: 0.7277 S13: -0.2612 REMARK 3 S21: 1.3227 S22: -0.5158 S23: 0.2821 REMARK 3 S31: 0.8456 S32: -1.2434 S33: 0.6871 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1610 -6.3580 -12.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.5406 T22: 0.1734 REMARK 3 T33: 0.8931 T12: 0.1545 REMARK 3 T13: 0.1020 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 4.2326 L22: 11.3366 REMARK 3 L33: 20.9903 L12: 0.2429 REMARK 3 L13: -4.3740 L23: -8.0974 REMARK 3 S TENSOR REMARK 3 S11: -0.5227 S12: 0.0054 S13: 0.0169 REMARK 3 S21: 0.6482 S22: 0.3471 S23: -0.2333 REMARK 3 S31: 0.0992 S32: 0.8688 S33: 0.1756 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4850 -7.3380 -23.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.5721 T22: 0.1777 REMARK 3 T33: 0.8646 T12: -0.2118 REMARK 3 T13: -0.1288 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 40.9707 L22: 1.1146 REMARK 3 L33: 25.0200 L12: -5.8372 REMARK 3 L13: -25.8348 L23: 2.1157 REMARK 3 S TENSOR REMARK 3 S11: -0.1194 S12: 0.2616 S13: -0.0381 REMARK 3 S21: 0.0774 S22: -0.1927 S23: -0.0907 REMARK 3 S31: -0.1937 S32: 0.7211 S33: 0.3120 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8930 -17.0820 -20.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0505 REMARK 3 T33: 0.7692 T12: 0.0102 REMARK 3 T13: -0.0096 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 4.1186 L22: 6.4553 REMARK 3 L33: 7.6078 L12: -3.8019 REMARK 3 L13: 2.7453 L23: -5.4764 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.1560 S13: -0.0162 REMARK 3 S21: -0.0193 S22: -0.1364 S23: -0.1915 REMARK 3 S31: 0.1640 S32: 0.2330 S33: 0.1676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6ABT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1300008479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 58.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ABQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WITH 0.2 M CALCIUM ACETATE, 0.1 M REMARK 280 CACODYLATE ACID, PH 6.3, AND 48 % POLYETHYLENE GLYCOL 600, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.09600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.19200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.09600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.19200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LEU B 69 CG CD1 CD2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 104 NZ LYS A 104 4445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 7 CA ALA A 7 CB 1.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 7 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 8 31.04 -153.18 REMARK 500 LEU A 12 -39.33 -39.95 REMARK 500 ARG A 22 73.13 -112.90 REMARK 500 THR A 46 -36.07 -31.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ABT B 8 104 UNP L8DXR9 L8DXR9_LISMN 8 104 DBREF 6ABT A 8 104 UNP L8DXR9 L8DXR9_LISMN 8 104 SEQADV 6ABT ALA B 7 UNP L8DXR9 EXPRESSION TAG SEQADV 6ABT ALA A 7 UNP L8DXR9 EXPRESSION TAG SEQRES 1 B 98 ALA LEU LYS GLY SER LEU GLU GLY MET ILE LEU GLU ARG SEQRES 2 B 98 ILE SER ARG GLY GLU THR TYR GLY TYR GLU ILE THR LYS SEQRES 3 B 98 TYR LEU ASN ASP LEU GLY PHE ASP GLU ILE VAL GLU GLY SEQRES 4 B 98 THR VAL TYR THR ILE LEU VAL ARG LEU GLU LYS LYS GLY SEQRES 5 B 98 LEU VAL GLU ILE GLU LYS LYS LYS SER GLU LEU GLY PRO SEQRES 6 B 98 PRO ARG LYS PHE TYR THR LEU SER PRO ALA GLY GLU GLU SEQRES 7 B 98 GLU LEU ALA ILE PHE TRP LYS ARG TRP ASP PHE ILE GLN SEQRES 8 B 98 GLY LYS ILE MET GLN VAL LYS SEQRES 1 A 98 ALA LEU LYS GLY SER LEU GLU GLY MET ILE LEU GLU ARG SEQRES 2 A 98 ILE SER ARG GLY GLU THR TYR GLY TYR GLU ILE THR LYS SEQRES 3 A 98 TYR LEU ASN ASP LEU GLY PHE ASP GLU ILE VAL GLU GLY SEQRES 4 A 98 THR VAL TYR THR ILE LEU VAL ARG LEU GLU LYS LYS GLY SEQRES 5 A 98 LEU VAL GLU ILE GLU LYS LYS LYS SER GLU LEU GLY PRO SEQRES 6 A 98 PRO ARG LYS PHE TYR THR LEU SER PRO ALA GLY GLU GLU SEQRES 7 A 98 GLU LEU ALA ILE PHE TRP LYS ARG TRP ASP PHE ILE GLN SEQRES 8 A 98 GLY LYS ILE MET GLN VAL LYS FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 LEU B 8 SER B 21 1 14 HELIX 2 AA2 TYR B 26 LEU B 37 1 12 HELIX 3 AA3 VAL B 43 LYS B 57 1 15 HELIX 4 AA4 SER B 79 LYS B 104 1 26 HELIX 5 AA5 SER A 11 ARG A 22 1 12 HELIX 6 AA6 TYR A 26 GLY A 38 1 13 HELIX 7 AA7 VAL A 43 LYS A 57 1 15 HELIX 8 AA8 SER A 79 LYS A 104 1 26 SHEET 1 AA1 2 VAL B 60 LYS B 65 0 SHEET 2 AA1 2 ARG B 73 LEU B 78 -1 O THR B 77 N GLU B 61 SHEET 1 AA2 2 VAL A 60 LYS A 65 0 SHEET 2 AA2 2 ARG A 73 LEU A 78 -1 O THR A 77 N GLU A 61 CRYST1 67.024 67.024 90.288 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014920 0.008614 0.000000 0.00000 SCALE2 0.000000 0.017228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011076 0.00000