HEADER HYDROLASE 26-JUL-18 6ACO TITLE HISTONE LYSINE DESUCCINYLASE SIRT5 IN COMPLEX WITH SUCCINYL PEPTIDE TITLE 2 H2BK120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-302; COMPND 5 SYNONYM: HISTONE LYSINE DESUCCINYLASE SIRT5; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUCCINYL PEPTIDE H2BK120; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HISTONE LYSINE DESUCCINYLASE SIRT5 IN COMPLEX WITH SUCCINYL PEPTIDE KEYWDS 2 H2BK120, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.R.HANG,W.B.CHEN REVDAT 2 22-NOV-23 6ACO 1 REMARK REVDAT 1 24-JUL-19 6ACO 0 JRNL AUTH T.R.HANG,W.B.CHEN JRNL TITL COMPLEX STRUCTURE OF HISTONE LYSINE DESUCCINYLASE SIRT5 WITH JRNL TITL 2 SUCCINYL PEPTIDE H2BK120 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 22645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2257 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2135 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3058 ; 2.190 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4914 ; 3.742 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;37.041 ;22.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;13.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2572 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.020 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1142 ; 2.862 ; 2.639 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1141 ; 2.839 ; 2.637 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 3.835 ; 3.945 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1431 ; 3.835 ; 3.946 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 4.223 ; 3.130 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1115 ; 4.218 ; 3.130 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1626 ; 6.304 ; 4.489 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2565 ; 8.144 ;22.481 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2565 ; 8.146 ;22.485 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ACO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 55.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ACE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE (PH 6.5), 30%(W/V) PEG8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.43850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 226 CB ALA B 117 1.37 REMARK 500 O HOH A 510 O HOH B 308 1.73 REMARK 500 O HOH A 672 O HOH A 674 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PHE A 260 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 THR B 119 O - C - N ANGL. DEV. = -19.7 DEGREES REMARK 500 SLL B 120 CA - C - N ANGL. DEV. = 22.1 DEGREES REMARK 500 SLL B 120 O - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -123.78 53.01 REMARK 500 CYS A 212 -67.37 -104.23 REMARK 500 CYS A 212 -75.43 -97.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR B 119 -32.04 REMARK 500 SLL B 120 -16.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 707 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 114.7 REMARK 620 3 CYS A 207 SG 116.9 96.1 REMARK 620 4 CYS A 212 SG 97.6 115.1 117.7 REMARK 620 5 CYS A 212 SG 135.7 76.4 103.3 44.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SLL B 120 REMARK 800 through TYR B 121 bound to THR B 119 DBREF 6ACO A 34 302 UNP Q9NXA8 SIR5_HUMAN 34 302 DBREF 6ACO B 117 123 PDB 6ACO 6ACO 117 123 SEQADV 6ACO SER A 33 UNP Q9NXA8 EXPRESSION TAG SEQRES 1 A 270 SER ALA ARG PRO SER SER SER MET ALA ASP PHE ARG LYS SEQRES 2 A 270 PHE PHE ALA LYS ALA LYS HIS ILE VAL ILE ILE SER GLY SEQRES 3 A 270 ALA GLY VAL SER ALA GLU SER GLY VAL PRO THR PHE ARG SEQRES 4 A 270 GLY ALA GLY GLY TYR TRP ARG LYS TRP GLN ALA GLN ASP SEQRES 5 A 270 LEU ALA THR PRO LEU ALA PHE ALA HIS ASN PRO SER ARG SEQRES 6 A 270 VAL TRP GLU PHE TYR HIS TYR ARG ARG GLU VAL MET GLY SEQRES 7 A 270 SER LYS GLU PRO ASN ALA GLY HIS ARG ALA ILE ALA GLU SEQRES 8 A 270 CYS GLU THR ARG LEU GLY LYS GLN GLY ARG ARG VAL VAL SEQRES 9 A 270 VAL ILE THR GLN ASN ILE ASP GLU LEU HIS ARG LYS ALA SEQRES 10 A 270 GLY THR LYS ASN LEU LEU GLU ILE HIS GLY SER LEU PHE SEQRES 11 A 270 LYS THR ARG CYS THR SER CYS GLY VAL VAL ALA GLU ASN SEQRES 12 A 270 TYR LYS SER PRO ILE CYS PRO ALA LEU SER GLY LYS GLY SEQRES 13 A 270 ALA PRO GLU PRO GLY THR GLN ASP ALA SER ILE PRO VAL SEQRES 14 A 270 GLU LYS LEU PRO ARG CYS GLU GLU ALA GLY CYS GLY GLY SEQRES 15 A 270 LEU LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU ASN LEU SEQRES 16 A 270 ASP PRO ALA ILE LEU GLU GLU VAL ASP ARG GLU LEU ALA SEQRES 17 A 270 HIS CYS ASP LEU CYS LEU VAL VAL GLY THR SER SER VAL SEQRES 18 A 270 VAL TYR PRO ALA ALA MET PHE ALA PRO GLN VAL ALA ALA SEQRES 19 A 270 ARG GLY VAL PRO VAL ALA GLU PHE ASN THR GLU THR THR SEQRES 20 A 270 PRO ALA THR ASN ARG PHE ARG PHE HIS PHE GLN GLY PRO SEQRES 21 A 270 CYS GLY THR THR LEU PRO GLU ALA LEU ALA SEQRES 1 B 7 ALA VAL THR SLL TYR THR SER HET SLL B 120 16 HET ZN A 401 1 HET CL A 402 1 HET GOL B 201 6 HETNAM SLL (2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-BUTANOYL) HETNAM 2 SLL AMINO]HEXANOIC ACID HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN SLL 6-N-SUCCINYL-L-LYSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SLL C10 H18 N2 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 CL CL 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *218(H2 O) HELIX 1 AA1 SER A 39 ALA A 50 1 12 HELIX 2 AA2 GLY A 58 GLU A 64 1 7 HELIX 3 AA3 ARG A 71 GLY A 75 5 5 HELIX 4 AA4 GLN A 81 ALA A 86 1 6 HELIX 5 AA5 THR A 87 ASN A 94 1 8 HELIX 6 AA6 ASN A 94 MET A 109 1 16 HELIX 7 AA7 GLY A 110 LYS A 112 5 3 HELIX 8 AA8 ASN A 115 GLN A 131 1 17 HELIX 9 AA9 GLU A 144 GLY A 150 1 7 HELIX 10 AB1 CYS A 181 SER A 185 5 5 HELIX 11 AB2 PRO A 200 LEU A 204 5 5 HELIX 12 AB3 ASP A 228 CYS A 242 1 15 HELIX 13 AB4 PRO A 256 ALA A 258 5 3 HELIX 14 AB5 MET A 259 ALA A 266 1 8 HELIX 15 AB6 ALA A 281 PHE A 285 5 5 HELIX 16 AB7 PRO A 292 LEU A 301 1 10 SHEET 1 AA1 6 LEU A 154 GLU A 156 0 SHEET 2 AA1 6 ARG A 134 THR A 139 1 N THR A 139 O LEU A 155 SHEET 3 AA1 6 HIS A 52 SER A 57 1 N ILE A 55 O ILE A 138 SHEET 4 AA1 6 LEU A 244 VAL A 248 1 O VAL A 248 N ILE A 56 SHEET 5 AA1 6 VAL A 271 ASN A 275 1 O PHE A 274 N VAL A 247 SHEET 6 AA1 6 PHE A 287 GLN A 290 1 O PHE A 289 N GLU A 273 SHEET 1 AA2 3 VAL A 172 GLU A 174 0 SHEET 2 AA2 3 GLY A 159 CYS A 166 -1 N THR A 164 O ALA A 173 SHEET 3 AA2 3 LEU A 216 VAL A 220 -1 O ARG A 217 N ARG A 165 SHEET 1 AA3 2 VAL A 254 TYR A 255 0 SHEET 2 AA3 2 TYR B 121 THR B 122 -1 O TYR B 121 N TYR A 255 LINK C THR B 119 N SLL B 120 1555 1555 1.34 LINK C SLL B 120 N TYR B 121 1555 1555 1.31 LINK SG CYS A 166 ZN ZN A 401 1555 1555 2.40 LINK SG ACYS A 169 ZN ZN A 401 1555 1555 2.23 LINK SG CYS A 207 ZN ZN A 401 1555 1555 2.53 LINK SG ACYS A 212 ZN ZN A 401 1555 1555 2.41 LINK SG BCYS A 212 ZN ZN A 401 1555 1555 2.34 CISPEP 1 SER A 178 PRO A 179 0 -12.80 CISPEP 2 TYR A 255 PRO A 256 0 4.61 SITE 1 AC1 4 CYS A 166 CYS A 169 CYS A 207 CYS A 212 SITE 1 AC2 3 ALA A 59 ARG A 71 SER A 251 SITE 1 AC3 7 ARG A 147 LYS A 148 GLY A 150 HOH A 581 SITE 2 AC3 7 ALA B 117 VAL B 118 THR B 119 SITE 1 AC4 22 TYR A 102 ARG A 105 GLU A 113 PRO A 114 SITE 2 AC4 22 ARG A 119 ILE A 142 HIS A 158 VAL A 221 SITE 3 AC4 22 TRP A 222 PHE A 223 GLY A 224 GLU A 225 SITE 4 AC4 22 VAL A 253 VAL A 254 TYR A 255 HOH A 559 SITE 5 AC4 22 HOH A 569 THR B 119 THR B 122 HOH B 302 SITE 6 AC4 22 HOH B 304 HOH B 307 CRYST1 33.885 64.877 55.564 90.00 95.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029512 0.000000 0.003061 0.00000 SCALE2 0.000000 0.015414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018094 0.00000