HEADER BIOSYNTHETIC PROTEIN 30-JUL-18 6AD3 TITLE STRUCTURAL CHARACTERIZATION OF THE CONDENSATION DOMAIN FROM MONACOLIN TITLE 2 K POLYKETIDE SYNTHASE MOKA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOVASTATIN NONAKETIDE SYNTHASE MOKA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MONACOLIN K BIOSYNTHESIS PROTEIN A; COMPND 5 EC: 2.3.1.161; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: MONASCUS PILOSUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MONASCUS PILOSUS; SOURCE 3 ORGANISM_COMMON: RED MOLD; SOURCE 4 ORGANISM_TAXID: 89488; SOURCE 5 GENE: MOKA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS POLYKETIDE SYNTHEASE, CONDENSATION DOMAIN, NONRIBOSOMAL PEPTIDE KEYWDS 2 SYNTHETASES, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,J.ZHENG REVDAT 2 27-MAR-24 6AD3 1 REMARK REVDAT 1 03-APR-19 6AD3 0 JRNL AUTH L.WANG,M.YUAN,J.ZHENG JRNL TITL CRYSTAL STRUCTURE OF THE CONDENSATION DOMAIN FROM LOVASTATIN JRNL TITL 2 POLYKETIDE SYNTHASE. JRNL REF SYNTH SYST BIOTECHNOL V. 4 10 2019 JRNL REFN ISSN 2405-805X JRNL PMID 30533541 JRNL DOI 10.1016/J.SYNBIO.2018.11.003 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2681 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3616 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3431 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4905 ; 1.203 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7853 ; 0.675 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 8.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;35.912 ;23.295 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;15.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4142 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5595 30.9132 62.1917 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.0053 REMARK 3 T33: 0.0054 T12: -0.0069 REMARK 3 T13: 0.0003 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3226 L22: 0.4800 REMARK 3 L33: 0.3505 L12: -0.1898 REMARK 3 L13: -0.0872 L23: 0.1426 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.0210 S13: -0.0241 REMARK 3 S21: 0.0127 S22: -0.0126 S23: -0.0102 REMARK 3 S31: -0.0041 S32: 0.0148 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6AD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POTASSIUM ACETATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.55050 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.59800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.55050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.59800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 ASP A 14 REMARK 465 ASN A 15 REMARK 465 ASP A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 GLY A 22 REMARK 465 THR A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 THR A 30 REMARK 465 ILE A 31 REMARK 465 THR A 32 REMARK 465 GLU A 33 REMARK 465 PRO A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 ASP A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 LYS A 43 REMARK 465 GLN A 44 REMARK 465 GLU A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 ASP A 265 CG OD1 OD2 REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 ASN A 268 CG OD1 ND2 REMARK 470 SER A 269 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 356 NZ LYS A 376 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 267 NH2 ARG A 385 1655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 265 -74.28 -127.38 REMARK 500 ASN A 268 109.90 60.96 REMARK 500 ASN A 277 23.25 -143.65 REMARK 500 ASN A 359 55.11 -96.33 REMARK 500 ALA A 407 43.98 -142.06 REMARK 500 LEU A 412 -49.74 76.80 REMARK 500 LYS A 458 -165.10 -126.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 251 VAL A 252 -123.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 200 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6AD3 A 2 499 UNP Q3S2T9 MOKA_MONPI 2578 3075 SEQADV 6AD3 MET A -19 UNP Q3S2T9 INITIATING METHIONINE SEQADV 6AD3 GLY A -18 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 SER A -17 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 SER A -16 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A -15 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A -14 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A -13 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A -12 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A -11 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A -10 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 SER A -9 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 SER A -8 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 GLY A -7 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 LEU A -6 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 VAL A -5 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 PRO A -4 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 ARG A -3 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 GLY A -2 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 SER A -1 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 HIS A 0 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 MET A 1 UNP Q3S2T9 EXPRESSION TAG SEQADV 6AD3 TRP A 153 UNP Q3S2T9 ARG 2729 ENGINEERED MUTATION SEQRES 1 A 519 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 519 LEU VAL PRO ARG GLY SER HIS MET LEU VAL ALA ALA SER SEQRES 3 A 519 GLU GLY GLY ALA GLU THR SER ASP ASN ASP THR SER GLY SEQRES 4 A 519 PRO GLU GLY THR ASP LEU SER ALA SER THR THR ILE THR SEQRES 5 A 519 GLU PRO SER SER ALA ASP GLU GLU ASP GLU LYS GLN GLU SEQRES 6 A 519 ASP ASP ASN ASP ASN SER VAL LEU ALA LEU HIS PRO LEU SEQRES 7 A 519 SER LEU GLY GLN GLU TYR ALA TRP ARG LEU GLN LYS ALA SEQRES 8 A 519 ALA ASP ASP SER THR ILE PHE ASN ASN THR ILE GLY MET SEQRES 9 A 519 PHE MET THR GLY SER ILE ASP ALA LYS ARG LEU SER LYS SEQRES 10 A 519 ALA LEU ARG ALA VAL LEU ARG ARG HIS GLU ILE PHE ARG SEQRES 11 A 519 THR GLY PHE ALA ALA VAL GLY ASN ASN ALA ASP ALA THR SEQRES 12 A 519 SER LEU ALA GLN ILE VAL PHE GLY ARG THR LYS ASN LYS SEQRES 13 A 519 VAL GLN VAL ILE GLN VAL ALA ASP ARG ALA GLY ALA GLU SEQRES 14 A 519 GLU GLY TYR TRP GLN LEU VAL GLN THR GLN TYR ASP ILE SEQRES 15 A 519 THR ALA GLY ASP THR LEU ARG LEU VAL ASP PHE PHE TRP SEQRES 16 A 519 GLY LYS ASP GLU HIS LEU PHE VAL VAL ALA TYR HIS ARG SEQRES 17 A 519 PHE VAL GLY ASP GLY SER THR THR GLU ASN ILE PHE VAL SEQRES 18 A 519 GLU ALA SER GLN LEU TYR GLY GLY VAL THR LEU ASP LYS SEQRES 19 A 519 HIS VAL PRO GLN PHE ALA ASP LEU ALA THR ARG GLN ARG SEQRES 20 A 519 GLU ALA LEU GLU SER GLY GLN MET ASP ALA ASP LEU ALA SEQRES 21 A 519 TYR TRP GLU SER MET HIS HIS GLN PRO THR GLY VAL VAL SEQRES 22 A 519 SER PRO VAL LEU PRO ARG MET LEU LEU GLY GLU ASP GLY SEQRES 23 A 519 LEU ASN SER PRO ASN HIS ALA ARG GLN PRO ASN SER TRP SEQRES 24 A 519 LYS GLN HIS GLU ALA ILE ALA ARG LEU ASP PRO MET VAL SEQRES 25 A 519 ALA PHE ARG ILE ARG GLU ARG SER ARG LYS HIS LYS ALA SEQRES 26 A 519 THR PRO MET GLN PHE TYR LEU ALA ALA TYR HIS VAL LEU SEQRES 27 A 519 LEU ALA ARG LEU THR GLY SER SER ASP PHE SER ILE GLY SEQRES 28 A 519 LEU ALA ASP THR ASN ARG THR ASN VAL ASP GLU LEU ALA SEQRES 29 A 519 GLY MET GLY PHE PHE ALA ASN LEU LEU PRO LEU ARG PHE SEQRES 30 A 519 ARG ASN PHE VAL PRO HIS ILE THR PHE GLY GLU HIS LEU SEQRES 31 A 519 VAL ALA THR LYS ASP LYS VAL ARG GLU ALA MET GLN HIS SEQRES 32 A 519 ALA ARG VAL PRO TYR GLY VAL LEU LEU GLU ARG LEU GLY SEQRES 33 A 519 PHE GLU VAL PRO GLY ALA THR ALA GLU THR ALA GLU PRO SEQRES 34 A 519 ALA PRO LEU PHE GLN ALA VAL PHE ASP TYR LYS GLN GLY SEQRES 35 A 519 GLN ALA GLU SER GLY SER ILE GLY SER ALA LYS MET THR SEQRES 36 A 519 GLU VAL ILE ALA THR ARG GLU ARG THR PRO TYR ASP VAL SEQRES 37 A 519 VAL LEU GLU MET SER ASP ASP PRO THR LYS ASP PRO LEU SEQRES 38 A 519 LEU THR VAL LYS LEU GLN SER SER VAL TYR GLU VAL HIS SEQRES 39 A 519 HIS PRO ARG ALA PHE LEU GLU SER TYR ILE SER ILE LEU SEQRES 40 A 519 SER MET PHE SER MET ASN PRO ALA LEU LYS LEU ALA FORMUL 2 HOH *260(H2 O) HELIX 1 AA1 SER A 59 ALA A 72 1 14 HELIX 2 AA2 ASP A 74 ASN A 79 5 6 HELIX 3 AA3 ASP A 91 HIS A 106 1 16 HELIX 4 AA4 GLU A 107 PHE A 109 5 3 HELIX 5 AA5 ASP A 144 GLN A 157 1 14 HELIX 6 AA6 ASP A 161 GLY A 165 5 5 HELIX 7 AA7 ARG A 188 GLY A 191 5 4 HELIX 8 AA8 ASP A 192 GLY A 208 1 17 HELIX 9 AA9 GLN A 218 SER A 232 1 15 HELIX 10 AB1 MET A 235 HIS A 247 1 13 HELIX 11 AB2 ASP A 289 HIS A 303 1 15 HELIX 12 AB3 THR A 306 GLY A 324 1 19 HELIX 13 AB4 ASN A 339 GLY A 345 1 7 HELIX 14 AB5 THR A 365 GLN A 382 1 18 HELIX 15 AB6 PRO A 387 LEU A 395 1 9 HELIX 16 AB7 GLN A 423 SER A 428 5 6 HELIX 17 AB8 HIS A 474 ASN A 493 1 20 SHEET 1 AA1 3 VAL A 52 PRO A 57 0 SHEET 2 AA1 3 LEU A 125 PHE A 130 -1 O VAL A 129 N LEU A 53 SHEET 3 AA1 3 THR A 111 ALA A 115 -1 N GLY A 112 O ILE A 128 SHEET 1 AA2 5 VAL A 137 GLN A 141 0 SHEET 2 AA2 5 LEU A 168 TRP A 175 1 O ASP A 172 N ILE A 140 SHEET 3 AA2 5 GLU A 179 TYR A 186 -1 O VAL A 183 N VAL A 171 SHEET 4 AA2 5 ASN A 80 THR A 87 -1 N MET A 84 O PHE A 182 SHEET 5 AA2 5 LYS A 433 THR A 440 -1 O ILE A 438 N GLY A 83 SHEET 1 AA3 6 GLN A 281 ARG A 287 0 SHEET 2 AA3 6 LEU A 461 GLN A 467 -1 O LEU A 462 N ALA A 286 SHEET 3 AA3 6 VAL A 448 SER A 453 -1 N GLU A 451 O THR A 463 SHEET 4 AA3 6 ALA A 415 LYS A 420 1 N ASP A 418 O MET A 452 SHEET 5 AA3 6 PHE A 328 ASP A 334 1 N GLY A 331 O ALA A 415 SHEET 6 AA3 6 ASN A 351 PHE A 357 -1 O LEU A 353 N LEU A 332 CISPEP 1 ALA A 120 ASP A 121 0 -10.04 CISPEP 2 LEU A 262 GLY A 263 0 -18.95 CISPEP 3 ASP A 265 GLY A 266 0 0.99 CRYST1 51.101 64.042 173.196 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005774 0.00000