HEADER VIRUS 01-AUG-18 6ADL TITLE ANTHRAX TOXIN RECEPTOR 1-BOUND SPENT PARTICLES OF SENECA VALLEY VIRUS TITLE 2 IN ACIDIC CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VP3; COMPND 6 CHAIN: C; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: VP2; COMPND 9 CHAIN: B; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: ANTHRAX TOXIN RECEPTOR 1; COMPND 12 CHAIN: R; COMPND 13 FRAGMENT: UNP RESIDUES 38-220; COMPND 14 SYNONYM: TUMOR ENDOTHELIAL MARKER 8; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SENECAVIRUS A; SOURCE 3 ORGANISM_TAXID: 390157; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SENECAVIRUS A; SOURCE 6 ORGANISM_TAXID: 390157; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SENECAVIRUS A; SOURCE 9 ORGANISM_TAXID: 390157; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: ANTXR1; SOURCE 15 EXPRESSION_SYSTEM: ENTEROBACTERIA PHAGE L1; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 268588 KEYWDS SENECA VALLEY VIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.Y.LOU,L.CAO REVDAT 2 09-OCT-24 6ADL 1 REMARK REVDAT 1 25-DEC-19 6ADL 0 JRNL AUTH L.CAO,R.ZHANG,T.LIU,Z.SUN,M.HU,Y.SUN,L.CHENG,Y.GUO,S.FU, JRNL AUTH 2 J.HU,X.LI,C.YU,H.WANG,H.CHEN,X.LI,E.E.FRY,D.I.STUART,P.QIAN, JRNL AUTH 3 Z.LOU,Z.RAO JRNL TITL SENECA VALLEY VIRUS ATTACHMENT AND UNCOATING MEDIATED BY ITS JRNL TITL 2 RECEPTOR ANTHRAX TOXIN RECEPTOR 1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 115 13087 2018 JRNL REFN ESSN 1091-6490 JRNL PMID 30514821 JRNL DOI 10.1073/PNAS.1814309115 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.080 REMARK 3 NUMBER OF PARTICLES : 3171 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6ADL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008589. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SENECA VALLEY VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 163.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 59 REMARK 465 PRO C 60 REMARK 465 GLU C 61 REMARK 465 PRO C 62 REMARK 465 GLU C 63 REMARK 465 PRO C 64 REMARK 465 ALA C 65 REMARK 465 SER C 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 196 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 52.88 -94.22 REMARK 500 CYS A 115 50.24 -91.03 REMARK 500 SER A 150 -167.23 -163.03 REMARK 500 SER A 202 -162.13 -77.45 REMARK 500 SER A 203 76.47 61.69 REMARK 500 CYS A 248 81.39 55.45 REMARK 500 ARG C 112 114.90 -160.59 REMARK 500 ASN C 185 -18.96 66.35 REMARK 500 SER C 186 -158.99 -156.75 REMARK 500 SER C 211 75.25 53.90 REMARK 500 LEU C 228 78.27 58.80 REMARK 500 TYR B 36 -9.49 70.85 REMARK 500 PRO B 86 41.45 -89.92 REMARK 500 GLU B 138 64.62 60.43 REMARK 500 PRO B 145 60.52 -64.54 REMARK 500 ASP B 146 52.01 162.72 REMARK 500 LYS B 148 -115.27 -98.75 REMARK 500 GLN B 159 -19.14 70.35 REMARK 500 ASN B 192 40.42 -102.45 REMARK 500 ARG B 210 21.95 -140.36 REMARK 500 ASN B 234 48.10 -141.18 REMARK 500 ASP B 255 76.46 53.20 REMARK 500 SER B 266 73.72 51.96 REMARK 500 SER R 86 -60.21 -120.67 REMARK 500 ASP R 150 -63.87 -90.06 REMARK 500 ASP R 182 128.41 -31.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL C 187 TYR C 188 -135.08 REMARK 500 SER C 189 ALA C 190 148.65 REMARK 500 LYS R 181 ASP R 182 -134.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 146 OD2 REMARK 620 2 SER R 52 OG 116.4 REMARK 620 3 SER R 54 OG 138.6 62.0 REMARK 620 4 THR R 118 OG1 91.1 77.8 125.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG R 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9607 RELATED DB: EMDB REMARK 900 ONE STATE OF SENECA VALLEY VIRUS IN COMPLEX A LIGAND DBREF 6ADL A 29 258 PDB 6ADL 6ADL 29 258 DBREF 6ADL C 1 238 PDB 6ADL 6ADL 1 238 DBREF 6ADL B 32 277 PDB 6ADL 6ADL 32 277 DBREF 6ADL R 38 220 UNP Q9H6X2 ANTR1_HUMAN 38 220 SEQADV 6ADL SER R 36 UNP Q9H6X2 EXPRESSION TAG SEQADV 6ADL MET R 37 UNP Q9H6X2 EXPRESSION TAG SEQADV 6ADL ALA R 177 UNP Q9H6X2 CYS 177 ENGINEERED MUTATION SEQRES 1 A 230 ASN HIS THR ASN VAL LYS PHE LEU PHE ASP ARG SER ARG SEQRES 2 A 230 LEU LEU ASN VAL ILE LYS VAL LEU GLU LYS ASP ALA VAL SEQRES 3 A 230 PHE PRO ARG PRO PHE PRO THR ALA THR GLY THR GLN GLN SEQRES 4 A 230 ASP ASP GLY TYR PHE CYS LEU LEU THR PRO ARG PRO THR SEQRES 5 A 230 VAL ALA SER ARG PRO ALA THR ARG PHE GLY LEU TYR VAL SEQRES 6 A 230 SER PRO SER ASP SER GLY VAL LEU ALA ASN THR SER LEU SEQRES 7 A 230 ASP PHE ASN PHE TYR SER LEU ALA CYS PHE THR TYR PHE SEQRES 8 A 230 ARG SER ASP LEU GLU VAL THR VAL VAL SER LEU GLU PRO SEQRES 9 A 230 ASP LEU GLU PHE ALA VAL GLY TRP PHE PRO SER GLY SER SEQRES 10 A 230 GLU TYR GLN ALA SER SER PHE VAL TYR ASP GLN LEU HIS SEQRES 11 A 230 VAL PRO TYR HIS PHE THR GLY ARG THR PRO ARG ALA PHE SEQRES 12 A 230 ALA SER LYS GLY GLY LYS VAL SER PHE VAL LEU PRO TRP SEQRES 13 A 230 ASN SER VAL SER SER VAL LEU PRO VAL ARG TRP GLY GLY SEQRES 14 A 230 ALA SER LYS LEU SER SER ALA THR ARG GLY LEU PRO ALA SEQRES 15 A 230 HIS ALA ASP TRP GLY THR ILE TYR ALA PHE ILE PRO ARG SEQRES 16 A 230 PRO ASN GLU LYS LYS SER THR ALA VAL LYS HIS VAL ALA SEQRES 17 A 230 VAL TYR ILE ARG TYR LYS ASN ALA ARG ALA TRP CYS PRO SEQRES 18 A 230 SER MET LEU PRO PHE ARG SER TYR LYS SEQRES 1 C 238 GLY PRO ILE PRO THR ALA PRO ARG GLU ASN SER LEU MET SEQRES 2 C 238 PHE LEU SER THR THR PRO ASP ASP THR VAL PRO ALA TYR SEQRES 3 C 238 GLY ASN VAL ARG THR PRO PRO VAL ASN TYR LEU PRO GLY SEQRES 4 C 238 GLU ILE THR ASP LEU LEU GLN LEU ALA ARG ILE PRO THR SEQRES 5 C 238 LEU MET ALA PHE GLY ARG VAL PRO GLU PRO GLU PRO ALA SEQRES 6 C 238 SER ASP ALA TYR VAL PRO TYR VAL ALA VAL PRO THR GLN SEQRES 7 C 238 PHE ASP ASP LYS PRO LEU ILE SER PHE PRO ILE THR LEU SEQRES 8 C 238 SER ASP PRO VAL TYR GLN ASN THR LEU VAL GLY ALA ILE SEQRES 9 C 238 SER SER ASN PHE ALA ASN TYR ARG GLY CYS ILE GLN ILE SEQRES 10 C 238 THR LEU THR PHE CYS GLY PRO MET MET ALA ARG GLY LYS SEQRES 11 C 238 PHE LEU LEU SER TYR SER PRO PRO ASN GLY THR GLN PRO SEQRES 12 C 238 GLN THR LEU SER GLU ALA MET GLN CYS THR TYR SER ILE SEQRES 13 C 238 TRP ASP ILE GLY LEU ASN SER SER TRP THR PHE VAL ILE SEQRES 14 C 238 PRO TYR ILE SER PRO SER ASP TYR ARG GLU THR ARG ALA SEQRES 15 C 238 ILE THR ASN SER VAL TYR SER ALA ASP GLY TRP PHE SER SEQRES 16 C 238 LEU HIS LYS LEU THR LYS ILE THR LEU PRO PRO ASP CYS SEQRES 17 C 238 PRO GLN SER PRO CYS ILE LEU PHE PHE ALA SER ALA GLY SEQRES 18 C 238 GLU ASP TYR THR LEU ARG LEU PRO VAL ASP CYS ASN PRO SEQRES 19 C 238 SER TYR VAL PHE SEQRES 1 B 246 VAL LEU CYS ALA TYR VAL GLU ASP PRO THR LYS SER ASP SEQRES 2 B 246 PRO PRO SER SER SER THR ASP GLN PRO THR THR THR PHE SEQRES 3 B 246 THR ALA ILE ASP ARG TRP TYR THR GLY ARG LEU ASN SER SEQRES 4 B 246 TRP THR LYS ALA VAL LYS THR PHE SER PHE GLN ALA VAL SEQRES 5 B 246 PRO LEU PRO GLY ALA PHE LEU SER ARG GLN GLY GLY LEU SEQRES 6 B 246 ASN GLY GLY ALA PHE THR ALA THR LEU HIS ARG HIS PHE SEQRES 7 B 246 LEU MET LYS CYS GLY TRP GLN VAL GLN VAL GLN CYS ASN SEQRES 8 B 246 LEU THR GLN PHE HIS GLN GLY ALA LEU LEU VAL ALA MET SEQRES 9 B 246 VAL PRO GLU THR THR LEU ASP VAL LYS PRO ASP GLY LYS SEQRES 10 B 246 ALA LYS SER LEU GLN GLU LEU ASN GLU GLU GLN TRP VAL SEQRES 11 B 246 GLU MET SER ASP ASP TYR ARG THR GLY LYS ASN MET PRO SEQRES 12 B 246 PHE GLN SER LEU GLY THR TYR TYR ARG PRO PRO ASN TRP SEQRES 13 B 246 THR TRP GLY PRO ASN PHE ILE ASN PRO TYR GLN VAL THR SEQRES 14 B 246 VAL PHE PRO HIS GLN ILE LEU ASN ALA ARG THR SER THR SEQRES 15 B 246 SER VAL ASP ILE ASN VAL PRO TYR ILE GLY GLU THR PRO SEQRES 16 B 246 THR GLN SER SER GLU THR GLN ASN SER TRP THR LEU LEU SEQRES 17 B 246 VAL MET VAL LEU VAL PRO LEU ASP TYR LYS GLU GLY ALA SEQRES 18 B 246 THR THR ASP PRO GLU ILE THR PHE SER VAL ARG PRO THR SEQRES 19 B 246 SER PRO TYR PHE ASN GLY LEU ARG ASN ARG TYR THR SEQRES 1 R 185 SER MET ALA CYS TYR GLY GLY PHE ASP LEU TYR PHE ILE SEQRES 2 R 185 LEU ASP LYS SER GLY SER VAL LEU HIS HIS TRP ASN GLU SEQRES 3 R 185 ILE TYR TYR PHE VAL GLU GLN LEU ALA HIS LYS PHE ILE SEQRES 4 R 185 SER PRO GLN LEU ARG MET SER PHE ILE VAL PHE SER THR SEQRES 5 R 185 ARG GLY THR THR LEU MET LYS LEU THR GLU ASP ARG GLU SEQRES 6 R 185 GLN ILE ARG GLN GLY LEU GLU GLU LEU GLN LYS VAL LEU SEQRES 7 R 185 PRO GLY GLY ASP THR TYR MET HIS GLU GLY PHE GLU ARG SEQRES 8 R 185 ALA SER GLU GLN ILE TYR TYR GLU ASN ARG GLN GLY TYR SEQRES 9 R 185 ARG THR ALA SER VAL ILE ILE ALA LEU THR ASP GLY GLU SEQRES 10 R 185 LEU HIS GLU ASP LEU PHE PHE TYR SER GLU ARG GLU ALA SEQRES 11 R 185 ASN ARG SER ARG ASP LEU GLY ALA ILE VAL TYR ALA VAL SEQRES 12 R 185 GLY VAL LYS ASP PHE ASN GLU THR GLN LEU ALA ARG ILE SEQRES 13 R 185 ALA ASP SER LYS ASP HIS VAL PHE PRO VAL ASN ASP GLY SEQRES 14 R 185 PHE GLN ALA LEU GLN GLY ILE ILE HIS SER ILE LEU LYS SEQRES 15 R 185 LYS SER CYS HET MG R 301 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ HELIX 1 AA1 ASN A 32 PHE A 37 1 6 HELIX 2 AA2 ASP A 107 SER A 112 1 6 HELIX 3 AA3 PRO A 224 LYS A 228 5 5 HELIX 4 AA4 LEU C 44 ARG C 49 1 6 HELIX 5 AA5 LEU C 100 SER C 105 1 6 HELIX 6 AA6 SER C 106 PHE C 108 5 3 HELIX 7 AA7 THR C 145 GLN C 151 1 7 HELIX 8 AA8 PRO B 86 ARG B 92 1 7 HELIX 9 AA9 PHE B 101 HIS B 106 1 6 HELIX 10 AB1 GLN B 153 GLU B 158 1 6 HELIX 11 AB2 SER B 164 GLY B 170 1 7 HELIX 12 AB3 ASN B 195 PHE B 202 5 8 HELIX 13 AB4 HIS R 58 HIS R 71 1 14 HELIX 14 AB5 ASP R 98 GLN R 110 1 13 HELIX 15 AB6 TYR R 119 ASN R 135 1 17 HELIX 16 AB7 HIS R 154 LEU R 171 1 18 HELIX 17 AB8 ASN R 184 ALA R 192 1 9 HELIX 18 AB9 SER R 194 VAL R 198 5 5 HELIX 19 AC1 VAL R 201 LYS R 217 1 17 SHEET 1 AA1 6 PHE A 72 LEU A 74 0 SHEET 2 AA1 6 THR A 216 PHE A 220 -1 O ILE A 217 N CYS A 73 SHEET 3 AA1 6 ARG A 41 LEU A 49 1 N LEU A 49 O ALA A 219 SHEET 4 AA1 6 HIS A 234 PRO A 249 -1 O VAL A 237 N ASN A 44 SHEET 5 AA1 6 PHE A 116 SER A 129 -1 N THR A 126 O TYR A 238 SHEET 6 AA1 6 LEU A 191 PRO A 192 -1 O LEU A 191 N PHE A 119 SHEET 1 AA2 4 ALA A 170 PHE A 171 0 SHEET 2 AA2 4 ALA A 137 PHE A 141 -1 N VAL A 138 O ALA A 170 SHEET 3 AA2 4 THR A 216 PHE A 220 -1 O PHE A 220 N ALA A 137 SHEET 4 AA2 4 PHE A 72 LEU A 74 -1 N CYS A 73 O ILE A 217 SHEET 1 AA3 4 VAL A 178 LEU A 182 0 SHEET 2 AA3 4 PHE A 116 SER A 129 -1 N LEU A 123 O LEU A 182 SHEET 3 AA3 4 HIS A 234 PRO A 249 -1 O TYR A 238 N THR A 126 SHEET 4 AA3 4 GLU C 40 ILE C 41 -1 O ILE C 41 N ALA A 246 SHEET 1 AA4 2 THR A 80 VAL A 81 0 SHEET 2 AA4 2 ARG A 84 PRO A 85 -1 O ARG A 84 N VAL A 81 SHEET 1 AA5 2 PHE A 89 LEU A 91 0 SHEET 2 AA5 2 ASN B 186 TRP B 189 -1 O TRP B 189 N PHE A 89 SHEET 1 AA6 2 SER A 151 TYR A 154 0 SHEET 2 AA6 2 LEU A 157 PRO A 160 -1 O VAL A 159 N PHE A 152 SHEET 1 AA7 3 THR C 52 LEU C 53 0 SHEET 2 AA7 3 CYS C 213 ALA C 220 -1 O ALA C 218 N THR C 52 SHEET 3 AA7 3 TYR C 72 ALA C 74 -1 N VAL C 73 O ILE C 214 SHEET 1 AA8 4 THR C 52 LEU C 53 0 SHEET 2 AA8 4 CYS C 213 ALA C 220 -1 O ALA C 218 N THR C 52 SHEET 3 AA8 4 ILE C 115 PHE C 121 -1 N THR C 120 O LEU C 215 SHEET 4 AA8 4 THR C 166 VAL C 168 -1 O PHE C 167 N ILE C 117 SHEET 1 AA9 3 ARG C 178 GLU C 179 0 SHEET 2 AA9 3 ASN C 110 ARG C 112 -1 N TYR C 111 O ARG C 178 SHEET 3 AA9 3 THR C 225 ARG C 227 -1 O THR C 225 N ARG C 112 SHEET 1 AB1 3 ILE C 156 ASP C 158 0 SHEET 2 AB1 3 LYS C 130 LEU C 133 -1 N PHE C 131 O TRP C 157 SHEET 3 AB1 3 LEU C 196 LYS C 198 -1 O HIS C 197 N LEU C 132 SHEET 1 AB2 3 LEU B 33 CYS B 34 0 SHEET 2 AB2 3 ILE B 217 ASN B 218 1 O ASN B 218 N LEU B 33 SHEET 3 AB2 3 GLN B 116 VAL B 117 -1 N VAL B 117 O ILE B 217 SHEET 1 AB3 3 TYR B 64 LEU B 68 0 SHEET 2 AB3 3 ILE B 258 VAL B 262 -1 O VAL B 262 N TYR B 64 SHEET 3 AB3 3 GLN B 120 CYS B 121 -1 N GLN B 120 O THR B 259 SHEET 1 AB4 4 ALA B 82 LEU B 85 0 SHEET 2 AB4 4 TRP B 236 TYR B 248 -1 O LEU B 238 N VAL B 83 SHEET 3 AB4 4 HIS B 127 MET B 135 -1 N ALA B 134 O LEU B 239 SHEET 4 AB4 4 HIS B 204 ASN B 208 -1 O GLN B 205 N VAL B 133 SHEET 1 AB5 2 HIS B 108 LEU B 110 0 SHEET 2 AB5 2 ASN B 270 LEU B 272 -1 O ASN B 270 N LEU B 110 SHEET 1 AB6 6 THR R 90 THR R 96 0 SHEET 2 AB6 6 LEU R 78 PHE R 85 -1 N VAL R 84 O THR R 90 SHEET 3 AB6 6 PHE R 43 ASP R 50 1 N PHE R 47 O ILE R 83 SHEET 4 AB6 6 SER R 143 LEU R 148 1 O VAL R 144 N TYR R 46 SHEET 5 AB6 6 ALA R 173 GLY R 179 1 O ILE R 174 N ILE R 145 SHEET 6 AB6 6 PHE R 199 PRO R 200 1 O PHE R 199 N GLY R 179 SSBOND 1 CYS R 39 CYS R 220 1555 1555 2.03 LINK OD2 ASP B 146 MG MG R 301 1555 1555 2.69 LINK OG SER R 52 MG MG R 301 1555 1555 2.75 LINK OG SER R 54 MG MG R 301 1555 1555 2.16 LINK OG1 THR R 118 MG MG R 301 1555 1555 2.81 CISPEP 1 PHE A 59 PRO A 60 0 -1.08 CISPEP 2 LEU B 85 PRO B 86 0 -3.93 SITE 1 AC1 5 ASP B 146 SER R 52 SER R 54 THR R 118 SITE 2 AC1 5 GLY R 151 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000