HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 05-AUG-18 6AEJ TITLE CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH SMALL-MOLECULE TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO,ALPHA- COMPND 3 KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 4 CHAIN: A; COMPND 5 EC: 1.14.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTO, KIAA1752; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,R.CAO,S.PENG,W.ZHANG,N.HUANG REVDAT 2 22-NOV-23 6AEJ 1 REMARK REVDAT 1 19-JUN-19 6AEJ 0 JRNL AUTH S.PENG,W.XIAO,D.JU,B.SUN,N.HOU,Q.LIU,Y.WANG,H.ZHAO,C.GAO, JRNL AUTH 2 S.ZHANG,R.CAO,P.LI,H.HUANG,Y.MA,Y.WANG,W.LAI,Z.MA,W.ZHANG, JRNL AUTH 3 S.HUANG,H.WANG,Z.ZHANG,L.ZHAO,T.CAI,Y.L.ZHAO,F.WANG,Y.NIE, JRNL AUTH 4 G.ZHI,Y.G.YANG,E.E.ZHANG,N.HUANG JRNL TITL IDENTIFICATION OF ENTACAPONE AS A CHEMICAL INHIBITOR OF FTO JRNL TITL 2 MEDIATING METABOLIC REGULATION THROUGH FOXO1. JRNL REF SCI TRANSL MED V. 11 2019 JRNL REFN ESSN 1946-6242 JRNL PMID 30996080 JRNL DOI 10.1126/SCITRANSLMED.AAU7116 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1088 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 3.45000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.302 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 3350, 0.1M TRI-SODIUM REMARK 280 CITRATE DEHYDRATE PH5.6, 5.0MM 3-MET, 3.0MM NOG, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.02850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.00832 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.22400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 71.02850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.00832 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.22400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 71.02850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.00832 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.22400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.01665 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.44800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 82.01665 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.44800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 82.01665 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.44800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 GLY A 122 REMARK 465 SER A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 THR A 128 REMARK 465 SER A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 ASP A 189 REMARK 465 GLU A 190 REMARK 465 VAL A 191 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 LEU A 262 REMARK 465 GLU A 263 REMARK 465 LEU A 500 REMARK 465 LEU A 501 REMARK 465 GLU A 502 REMARK 465 ALA A 503 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 469 CE NZ REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 GLN A 499 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 385 OH TYR A 389 1.91 REMARK 500 OG1 THR A 320 NH1 ARG A 322 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 46 36.44 -150.44 REMARK 500 SER A 58 125.71 -28.33 REMARK 500 ASN A 110 -6.61 64.99 REMARK 500 ASP A 208 167.48 70.55 REMARK 500 GLN A 210 35.89 22.21 REMARK 500 ARG A 239 26.60 43.57 REMARK 500 TRP A 278 -22.90 66.90 REMARK 500 ASP A 299 -130.51 65.64 REMARK 500 THR A 328 10.10 58.12 REMARK 500 TRP A 378 -63.46 -121.52 REMARK 500 ASN A 387 83.99 -68.61 REMARK 500 ARG A 388 -53.66 -128.03 REMARK 500 LYS A 422 54.36 -93.17 REMARK 500 LEU A 426 119.06 65.65 REMARK 500 PRO A 427 66.65 -53.89 REMARK 500 VAL A 428 -18.52 -47.68 REMARK 500 GLU A 429 -138.95 -58.73 REMARK 500 GLN A 430 -51.28 -1.29 REMARK 500 ARG A 431 28.96 -74.64 REMARK 500 ASN A 432 53.88 -112.12 REMARK 500 LEU A 435 -65.31 -173.72 REMARK 500 LEU A 464 153.75 -40.99 REMARK 500 ASP A 479 -72.43 -61.04 REMARK 500 ASP A 480 112.97 -20.02 REMARK 500 ASP A 488 -63.03 120.35 REMARK 500 LEU A 489 -66.90 60.72 REMARK 500 THR A 490 -57.68 -166.13 REMARK 500 ASP A 491 -66.05 7.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 192 ILE A 193 -148.36 REMARK 500 PHE A 487 ASP A 488 149.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 ASP A 233 OD1 82.7 REMARK 620 3 HIS A 307 NE2 96.9 113.0 REMARK 620 4 7YC A 601 N11 79.3 128.7 116.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7YC A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 DBREF 6AEJ A 32 159 UNP Q9C0B1 FTO_HUMAN 32 159 DBREF 6AEJ A 186 505 UNP Q9C0B1 FTO_HUMAN 186 505 SEQADV 6AEJ MET A 11 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ GLY A 12 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ SER A 13 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ SER A 14 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQADV 6AEJ SER A 185 UNP Q9C0B1 LINKER SEQRES 1 A 470 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 470 LEU VAL PRO ARG GLY SER HIS MET THR PRO LYS ASP ASP SEQRES 3 A 470 GLU PHE TYR GLN GLN TRP GLN LEU LYS TYR PRO LYS LEU SEQRES 4 A 470 ILE LEU ARG GLU ALA SER SER VAL SER GLU GLU LEU HIS SEQRES 5 A 470 LYS GLU VAL GLN GLU ALA PHE LEU THR LEU HIS LYS HIS SEQRES 6 A 470 GLY CYS LEU PHE ARG ASP LEU VAL ARG ILE GLN GLY LYS SEQRES 7 A 470 ASP LEU LEU THR PRO VAL SER ARG ILE LEU ILE GLY ASN SEQRES 8 A 470 PRO GLY CYS THR TYR LYS TYR LEU ASN THR ARG LEU PHE SEQRES 9 A 470 THR VAL PRO TRP PRO VAL LYS GLY SER ASN ILE LYS HIS SEQRES 10 A 470 THR GLU ALA GLU ILE ALA ALA ALA CYS GLU THR PHE LEU SEQRES 11 A 470 LYS LEU ASN ASP TYR LEU GLN ILE GLU THR ILE GLN ALA SEQRES 12 A 470 LEU GLU GLU LEU ALA ALA SER ASN GLY GLN ASP GLU VAL SEQRES 13 A 470 ASP ILE LYS SER ARG ALA ALA TYR ASN VAL THR LEU LEU SEQRES 14 A 470 ASN PHE MET ASP PRO GLN LYS MET PRO TYR LEU LYS GLU SEQRES 15 A 470 GLU PRO TYR PHE GLY MET GLY LYS MET ALA VAL SER TRP SEQRES 16 A 470 HIS HIS ASP GLU ASN LEU VAL ASP ARG SER ALA VAL ALA SEQRES 17 A 470 VAL TYR SER TYR SER CYS GLU GLY PRO GLU GLU GLU SER SEQRES 18 A 470 GLU ASP ASP SER HIS LEU GLU GLY ARG ASP PRO ASP ILE SEQRES 19 A 470 TRP HIS VAL GLY PHE LYS ILE SER TRP ASP ILE GLU THR SEQRES 20 A 470 PRO GLY LEU ALA ILE PRO LEU HIS GLN GLY ASP CYS TYR SEQRES 21 A 470 PHE MET LEU ASP ASP LEU ASN ALA THR HIS GLN HIS CYS SEQRES 22 A 470 VAL LEU ALA GLY SER GLN PRO ARG PHE SER SER THR HIS SEQRES 23 A 470 ARG VAL ALA GLU CYS SER THR GLY THR LEU ASP TYR ILE SEQRES 24 A 470 LEU GLN ARG CYS GLN LEU ALA LEU GLN ASN VAL CYS ASP SEQRES 25 A 470 ASP VAL ASP ASN ASP ASP VAL SER LEU LYS SER PHE GLU SEQRES 26 A 470 PRO ALA VAL LEU LYS GLN GLY GLU GLU ILE HIS ASN GLU SEQRES 27 A 470 VAL GLU PHE GLU TRP LEU ARG GLN PHE TRP PHE GLN GLY SEQRES 28 A 470 ASN ARG TYR ARG LYS CYS THR ASP TRP TRP CYS GLN PRO SEQRES 29 A 470 MET ALA GLN LEU GLU ALA LEU TRP LYS LYS MET GLU GLY SEQRES 30 A 470 VAL THR ASN ALA VAL LEU HIS GLU VAL LYS ARG GLU GLY SEQRES 31 A 470 LEU PRO VAL GLU GLN ARG ASN GLU ILE LEU THR ALA ILE SEQRES 32 A 470 LEU ALA SER LEU THR ALA ARG GLN ASN LEU ARG ARG GLU SEQRES 33 A 470 TRP HIS ALA ARG CYS GLN SER ARG ILE ALA ARG THR LEU SEQRES 34 A 470 PRO ALA ASP GLN LYS PRO GLU CYS ARG PRO TYR TRP GLU SEQRES 35 A 470 LYS ASP ASP ALA SER MET PRO LEU PRO PHE ASP LEU THR SEQRES 36 A 470 ASP ILE VAL SER GLU LEU ARG GLY GLN LEU LEU GLU ALA SEQRES 37 A 470 LYS PRO HET 7YC A 601 23 HET ZN A 602 1 HETNAM 7YC (E)-3-[3-NITRO-4,5-BIS(OXIDANYL)PHENYL]-2-(1,3- HETNAM 2 7YC OXAZINAN-3-YLCARBONYL)PROP-2-ENENITRILE HETNAM ZN ZINC ION FORMUL 2 7YC C14 H13 N3 O6 FORMUL 3 ZN ZN 2+ HELIX 1 AA1 ASP A 36 TYR A 46 1 11 HELIX 2 AA2 GLU A 53 VAL A 57 5 5 HELIX 3 AA3 SER A 58 HIS A 75 1 18 HELIX 4 AA4 ALA A 130 ALA A 159 1 30 HELIX 5 AA5 ILE A 193 ALA A 197 1 5 HELIX 6 AA6 ASP A 300 THR A 304 1 5 HELIX 7 AA7 THR A 330 LEU A 342 1 13 HELIX 8 AA8 GLN A 343 VAL A 345 5 3 HELIX 9 AA9 GLU A 360 TRP A 378 1 19 HELIX 10 AB1 TRP A 378 GLN A 385 1 8 HELIX 11 AB2 TRP A 396 LYS A 422 1 27 HELIX 12 AB3 ILE A 438 GLN A 457 1 20 HELIX 13 AB4 SER A 458 LEU A 464 1 7 HELIX 14 AB5 ASP A 491 GLN A 499 1 9 SHEET 1 AA1 5 HIS A 30 MET A 31 0 SHEET 2 AA1 5 GLY A 284 LEU A 289 1 O ALA A 286 N MET A 31 SHEET 3 AA1 5 TRP A 270 ILE A 276 -1 N TRP A 270 O LEU A 289 SHEET 4 AA1 5 HIS A 305 LEU A 310 -1 O GLN A 306 N LYS A 275 SHEET 5 AA1 5 MET A 226 HIS A 231 -1 N HIS A 231 O HIS A 307 SHEET 1 AA2 7 LEU A 49 ARG A 52 0 SHEET 2 AA2 7 CYS A 294 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AA2 7 VAL A 242 SER A 248 -1 N VAL A 242 O MET A 297 SHEET 4 AA2 7 ARG A 316 ARG A 322 -1 O PHE A 317 N TYR A 247 SHEET 5 AA2 7 VAL A 201 MET A 207 -1 N ASN A 205 O SER A 318 SHEET 6 AA2 7 SER A 95 GLY A 100 -1 N ILE A 97 O LEU A 204 SHEET 7 AA2 7 VAL A 116 PRO A 117 1 O VAL A 116 N LEU A 98 SHEET 1 AA3 2 LEU A 82 ILE A 85 0 SHEET 2 AA3 2 LYS A 88 LEU A 91 -1 O LEU A 90 N VAL A 83 SHEET 1 AA4 2 THR A 105 TYR A 108 0 SHEET 2 AA4 2 THR A 111 PHE A 114 -1 O THR A 111 N TYR A 108 LINK NE2 HIS A 231 ZN ZN A 602 1555 1555 2.40 LINK OD1 ASP A 233 ZN ZN A 602 1555 1555 2.05 LINK NE2 HIS A 307 ZN ZN A 602 1555 1555 2.23 LINK N11 7YC A 601 ZN ZN A 602 1555 1555 1.73 CISPEP 1 ASP A 208 PRO A 209 0 22.12 CISPEP 2 ARG A 473 PRO A 474 0 -1.93 SITE 1 AC1 17 ARG A 96 TYR A 106 TYR A 108 ASN A 205 SITE 2 AC1 17 VAL A 228 HIS A 231 HIS A 232 ASP A 233 SITE 3 AC1 17 GLU A 234 TYR A 295 HIS A 307 VAL A 309 SITE 4 AC1 17 ARG A 316 SER A 318 THR A 320 ARG A 322 SITE 5 AC1 17 ZN A 602 SITE 1 AC2 4 HIS A 231 ASP A 233 HIS A 307 7YC A 601 CRYST1 142.057 142.057 84.672 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007039 0.004064 0.000000 0.00000 SCALE2 0.000000 0.008128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011810 0.00000