HEADER CELL INVASION 06-AUG-18 6AEX TITLE CRYSTAL STRUCTURE OF UNOCCUPIED MURINE UPAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROKINASE PLASMINOGEN ACTIVATOR SURFACE RECEPTOR; COMPND 3 CHAIN: U; COMPND 4 SYNONYM: UPAR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PLAUR; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS UPAR, TFPDS, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR L.MIN,M.HUANG REVDAT 3 22-NOV-23 6AEX 1 HETSYN REVDAT 2 29-JUL-20 6AEX 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 17-JUL-19 6AEX 0 JRNL AUTH M.LIU,L.LIN,G.HOYER-HANSEN,M.PLOUG,H.LI,L.JIANG,C.YUAN,J.LI, JRNL AUTH 2 M.HUANG JRNL TITL CRYSTAL STRUCTURE OF THE UNOCCUPIED MURINE UROKINASE-TYPE JRNL TITL 2 PLASMINOGEN ACTIVATOR RECEPTOR (UPAR) REVEALS A TIGHTLY JRNL TITL 3 PACKED DII-DIII UNIT. JRNL REF FEBS LETT. V. 593 1236 2019 JRNL REFN ISSN 0014-5793 JRNL PMID 31044429 JRNL DOI 10.1002/1873-3468.13397 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.340 REMARK 3 FREE R VALUE TEST SET COUNT : 636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2656 - 4.0911 1.00 2370 147 0.1778 0.2207 REMARK 3 2 4.0911 - 3.2478 1.00 2266 120 0.1865 0.2481 REMARK 3 3 3.2478 - 2.8375 1.00 2209 151 0.2165 0.2820 REMARK 3 4 2.8375 - 2.5781 1.00 2239 102 0.2144 0.2526 REMARK 3 5 2.5781 - 2.3933 1.00 2190 116 0.2512 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1270 REMARK 3 ANGLE : 1.011 1728 REMARK 3 CHIRALITY : 0.053 187 REMARK 3 PLANARITY : 0.005 227 REMARK 3 DIHEDRAL : 7.525 739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN U AND RESID 203:209) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8421 27.7826 47.6551 REMARK 3 T TENSOR REMARK 3 T11: 1.3021 T22: 1.8050 REMARK 3 T33: 0.9468 T12: -0.2089 REMARK 3 T13: -0.1777 T23: 0.1313 REMARK 3 L TENSOR REMARK 3 L11: 4.1625 L22: 3.4832 REMARK 3 L33: 6.9305 L12: 0.3286 REMARK 3 L13: 4.5950 L23: 2.9261 REMARK 3 S TENSOR REMARK 3 S11: -1.5436 S12: -1.0501 S13: 0.8048 REMARK 3 S21: 1.5421 S22: -1.1330 S23: -0.1137 REMARK 3 S31: 0.4289 S32: 2.5940 S33: 1.1944 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN U AND RESID 210:223) REMARK 3 ORIGIN FOR THE GROUP (A): 59.8356 26.1644 31.4866 REMARK 3 T TENSOR REMARK 3 T11: 0.3487 T22: 0.4588 REMARK 3 T33: 0.3805 T12: -0.0202 REMARK 3 T13: 0.0451 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 1.0861 L22: 3.4293 REMARK 3 L33: 2.8436 L12: -1.5152 REMARK 3 L13: 0.3312 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.2645 S12: -0.0764 S13: -0.4918 REMARK 3 S21: -0.1886 S22: -0.1521 S23: 0.2171 REMARK 3 S31: 0.4077 S32: -0.1260 S33: 0.3688 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN U AND RESID 224:235) REMARK 3 ORIGIN FOR THE GROUP (A): 74.3776 32.8935 42.3537 REMARK 3 T TENSOR REMARK 3 T11: 0.5351 T22: 1.0210 REMARK 3 T33: 1.1965 T12: -0.1219 REMARK 3 T13: -0.2506 T23: -0.1515 REMARK 3 L TENSOR REMARK 3 L11: 8.2535 L22: 7.5404 REMARK 3 L33: 4.4454 L12: 7.8970 REMARK 3 L13: 1.9004 L23: 1.6604 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: -1.7195 S13: 3.5115 REMARK 3 S21: 0.5856 S22: 0.6425 S23: -1.7157 REMARK 3 S31: -0.6411 S32: 1.7672 S33: -0.3818 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN U AND RESID 236:244) REMARK 3 ORIGIN FOR THE GROUP (A): 65.9468 28.1845 31.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.2696 T22: 0.5120 REMARK 3 T33: 0.3416 T12: -0.0410 REMARK 3 T13: 0.0205 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.5963 L22: 6.2059 REMARK 3 L33: 3.3710 L12: -1.8696 REMARK 3 L13: 1.1279 L23: 0.4690 REMARK 3 S TENSOR REMARK 3 S11: 0.4646 S12: -0.4819 S13: -0.2597 REMARK 3 S21: -0.0059 S22: -0.4551 S23: 0.4492 REMARK 3 S31: -0.4714 S32: 0.2273 S33: 0.2036 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN U AND RESID 245:250) REMARK 3 ORIGIN FOR THE GROUP (A): 72.8168 29.3670 27.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.5483 T22: 0.7651 REMARK 3 T33: 0.6612 T12: 0.0563 REMARK 3 T13: -0.0781 T23: 0.1977 REMARK 3 L TENSOR REMARK 3 L11: 7.0272 L22: 1.9053 REMARK 3 L33: 5.6395 L12: 1.2797 REMARK 3 L13: -2.4783 L23: 0.0806 REMARK 3 S TENSOR REMARK 3 S11: 0.3918 S12: -0.0878 S13: 0.7563 REMARK 3 S21: -0.3876 S22: -0.9175 S23: -0.9738 REMARK 3 S31: -0.3584 S32: -0.0834 S33: 0.5373 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN U AND RESID 251:256) REMARK 3 ORIGIN FOR THE GROUP (A): 74.3676 37.7751 34.3606 REMARK 3 T TENSOR REMARK 3 T11: 1.2609 T22: 1.4446 REMARK 3 T33: 1.7059 T12: -0.2419 REMARK 3 T13: -0.1215 T23: 0.2080 REMARK 3 L TENSOR REMARK 3 L11: 5.4630 L22: 8.4678 REMARK 3 L33: 1.1694 L12: 3.8664 REMARK 3 L13: 1.1978 L23: -1.2462 REMARK 3 S TENSOR REMARK 3 S11: -1.2384 S12: -2.3526 S13: 0.9313 REMARK 3 S21: -2.2574 S22: -0.6027 S23: 0.5314 REMARK 3 S31: -1.2209 S32: 0.1394 S33: 0.8372 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN U AND RESID 257:262) REMARK 3 ORIGIN FOR THE GROUP (A): 78.7780 32.4647 36.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.6137 T22: 0.8010 REMARK 3 T33: 1.2314 T12: -0.1161 REMARK 3 T13: 0.0207 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.0697 L22: 0.1755 REMARK 3 L33: 3.4553 L12: 0.1096 REMARK 3 L13: -0.4578 L23: -0.7917 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -1.1357 S13: 0.5641 REMARK 3 S21: 0.2992 S22: 0.3565 S23: -1.5098 REMARK 3 S31: -1.8399 S32: 1.1920 S33: -0.1505 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN U AND RESID 263:274) REMARK 3 ORIGIN FOR THE GROUP (A): 63.9357 19.9558 37.0491 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.6551 REMARK 3 T33: 0.5517 T12: 0.0956 REMARK 3 T13: 0.0333 T23: 0.1941 REMARK 3 L TENSOR REMARK 3 L11: 2.2085 L22: 2.8278 REMARK 3 L33: 1.5158 L12: 1.9620 REMARK 3 L13: -0.8340 L23: -0.4257 REMARK 3 S TENSOR REMARK 3 S11: -0.3987 S12: -0.5768 S13: -1.0685 REMARK 3 S21: -0.0234 S22: 0.1849 S23: -0.4626 REMARK 3 S31: 0.0926 S32: 0.3493 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN U AND RESID 92:98) REMARK 3 ORIGIN FOR THE GROUP (A): 68.0949 43.8175 5.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.5647 T22: 0.4128 REMARK 3 T33: 0.6625 T12: -0.0321 REMARK 3 T13: 0.1839 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 5.0452 L22: 5.6759 REMARK 3 L33: 8.8384 L12: 0.9745 REMARK 3 L13: 0.1268 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.6506 S12: 0.5707 S13: 0.3353 REMARK 3 S21: -1.4280 S22: 0.1546 S23: -0.9549 REMARK 3 S31: -0.4203 S32: 0.7617 S33: -0.9576 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN U AND RESID 99:106) REMARK 3 ORIGIN FOR THE GROUP (A): 61.2695 51.8884 20.0068 REMARK 3 T TENSOR REMARK 3 T11: 1.0859 T22: 0.5420 REMARK 3 T33: 1.0161 T12: 0.0078 REMARK 3 T13: 0.3120 T23: 0.1575 REMARK 3 L TENSOR REMARK 3 L11: 3.4668 L22: 5.4216 REMARK 3 L33: 2.3400 L12: -1.4894 REMARK 3 L13: 0.3026 L23: 3.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.3978 S12: 0.3533 S13: 0.6475 REMARK 3 S21: 2.4189 S22: 0.6189 S23: 3.2775 REMARK 3 S31: -0.5393 S32: -0.0108 S33: 0.0071 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN U AND RESID 107:111) REMARK 3 ORIGIN FOR THE GROUP (A): 54.9026 50.8997 14.7584 REMARK 3 T TENSOR REMARK 3 T11: 0.8530 T22: 0.9788 REMARK 3 T33: 1.6098 T12: 0.1498 REMARK 3 T13: -0.0652 T23: 0.2014 REMARK 3 L TENSOR REMARK 3 L11: 6.3607 L22: 3.5907 REMARK 3 L33: 8.5464 L12: -1.1063 REMARK 3 L13: -2.5168 L23: 0.5068 REMARK 3 S TENSOR REMARK 3 S11: -1.2188 S12: -1.4333 S13: 0.8117 REMARK 3 S21: 0.1979 S22: -0.3357 S23: 0.1154 REMARK 3 S31: -0.7539 S32: 0.6225 S33: 0.9459 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN U AND RESID 112:117) REMARK 3 ORIGIN FOR THE GROUP (A): 69.0592 47.1792 7.3901 REMARK 3 T TENSOR REMARK 3 T11: 0.5946 T22: 0.3517 REMARK 3 T33: 0.6901 T12: 0.1131 REMARK 3 T13: 0.1312 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.1656 L22: 3.9981 REMARK 3 L33: 6.8397 L12: -2.8536 REMARK 3 L13: -3.7076 L23: 1.9865 REMARK 3 S TENSOR REMARK 3 S11: -0.4614 S12: -0.8895 S13: -0.5424 REMARK 3 S21: 0.2127 S22: 0.2326 S23: -0.7124 REMARK 3 S31: 0.2830 S32: 0.7295 S33: 0.1878 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN U AND RESID 118:122) REMARK 3 ORIGIN FOR THE GROUP (A): 74.7095 38.0188 7.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.7401 T22: 1.0727 REMARK 3 T33: 1.2450 T12: -0.0139 REMARK 3 T13: 0.1197 T23: 0.2090 REMARK 3 L TENSOR REMARK 3 L11: 3.8750 L22: 2.0895 REMARK 3 L33: 3.2507 L12: 1.3702 REMARK 3 L13: -0.1082 L23: -2.0289 REMARK 3 S TENSOR REMARK 3 S11: 0.1809 S12: 1.8853 S13: -1.7071 REMARK 3 S21: -0.6246 S22: 0.3559 S23: -1.4042 REMARK 3 S31: -0.0003 S32: 2.0395 S33: -0.2413 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN U AND RESID 123:139) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4798 41.8606 24.6322 REMARK 3 T TENSOR REMARK 3 T11: 0.9752 T22: 0.3614 REMARK 3 T33: 0.6456 T12: 0.0212 REMARK 3 T13: 0.1247 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 3.6972 L22: 1.4644 REMARK 3 L33: 6.7741 L12: 0.4568 REMARK 3 L13: -1.0865 L23: -0.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: -0.4654 S13: 0.2031 REMARK 3 S21: 0.7654 S22: 0.1458 S23: 0.4192 REMARK 3 S31: -2.4651 S32: 0.4376 S33: -0.3116 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN U AND RESID 140:145) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5261 44.6422 19.2132 REMARK 3 T TENSOR REMARK 3 T11: 0.5345 T22: 0.3471 REMARK 3 T33: 0.5539 T12: 0.0377 REMARK 3 T13: 0.0280 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.2782 L22: 6.2866 REMARK 3 L33: 9.1465 L12: 0.8932 REMARK 3 L13: -2.3474 L23: 0.7827 REMARK 3 S TENSOR REMARK 3 S11: -0.6409 S12: -0.4268 S13: 0.9575 REMARK 3 S21: 0.0131 S22: -0.0174 S23: 0.5109 REMARK 3 S31: 0.0861 S32: 0.8601 S33: 0.3725 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN U AND RESID 146:152) REMARK 3 ORIGIN FOR THE GROUP (A): 72.6130 33.4718 15.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.7477 T22: 0.7161 REMARK 3 T33: 1.0501 T12: 0.2752 REMARK 3 T13: 0.0231 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 0.2293 L22: 0.7808 REMARK 3 L33: 2.5550 L12: -0.4295 REMARK 3 L13: -0.7825 L23: 1.4323 REMARK 3 S TENSOR REMARK 3 S11: -1.4050 S12: -1.5161 S13: 0.5031 REMARK 3 S21: 0.9809 S22: 0.0096 S23: -0.9594 REMARK 3 S31: 1.0510 S32: 0.2209 S33: 1.3538 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN U AND RESID 153:162) REMARK 3 ORIGIN FOR THE GROUP (A): 61.6358 33.3284 30.7052 REMARK 3 T TENSOR REMARK 3 T11: 0.3444 T22: 0.3241 REMARK 3 T33: 0.5153 T12: 0.0020 REMARK 3 T13: 0.0163 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 7.6263 L22: 4.5627 REMARK 3 L33: 3.6932 L12: -0.0878 REMARK 3 L13: -4.7525 L23: -0.3054 REMARK 3 S TENSOR REMARK 3 S11: 0.5895 S12: -1.0350 S13: 0.4548 REMARK 3 S21: 0.2429 S22: 0.1246 S23: 0.0578 REMARK 3 S31: -1.2306 S32: 0.8316 S33: -0.7399 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN U AND RESID 163:172) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3440 35.8740 16.8219 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 0.3240 REMARK 3 T33: 0.4000 T12: 0.0082 REMARK 3 T13: 0.0613 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.8846 L22: 1.2344 REMARK 3 L33: 9.7800 L12: 0.6334 REMARK 3 L13: -0.2756 L23: -0.6375 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: 0.0278 S13: -0.1281 REMARK 3 S21: -0.1635 S22: 0.1498 S23: -0.3499 REMARK 3 S31: 0.1187 S32: 0.0044 S33: 0.1651 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN U AND RESID 173:191) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5444 33.7442 22.0691 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.3397 REMARK 3 T33: 0.4280 T12: 0.0450 REMARK 3 T13: 0.0881 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 1.9246 L22: 3.3157 REMARK 3 L33: 3.3503 L12: 1.1268 REMARK 3 L13: -0.9521 L23: -0.7290 REMARK 3 S TENSOR REMARK 3 S11: 0.3692 S12: -0.2560 S13: -0.0014 REMARK 3 S21: 0.3126 S22: -0.1325 S23: 0.1719 REMARK 3 S31: -0.6422 S32: -0.0491 S33: -0.2498 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN U AND RESID 192:197) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5133 29.3915 40.0867 REMARK 3 T TENSOR REMARK 3 T11: 0.5206 T22: 0.6007 REMARK 3 T33: 0.7723 T12: -0.0177 REMARK 3 T13: 0.0868 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 5.5388 L22: 6.8966 REMARK 3 L33: 6.7126 L12: 5.7384 REMARK 3 L13: 3.8678 L23: 5.2859 REMARK 3 S TENSOR REMARK 3 S11: 0.8501 S12: -0.6269 S13: 0.3141 REMARK 3 S21: -0.1862 S22: -0.5820 S23: -1.6768 REMARK 3 S31: -0.7338 S32: -0.4488 S33: -0.1198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.393 REMARK 200 RESOLUTION RANGE LOW (A) : 37.261 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3LAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS.CL, 3M NACL, PH 7.4, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.69900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.91000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.34950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.91000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.04850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.91000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.34950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.91000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.04850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.69900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU U 1 REMARK 465 GLN U 2 REMARK 465 CYS U 3 REMARK 465 MET U 4 REMARK 465 GLN U 5 REMARK 465 CYS U 6 REMARK 465 GLU U 7 REMARK 465 SER U 8 REMARK 465 ASN U 9 REMARK 465 GLN U 10 REMARK 465 SER U 11 REMARK 465 CYS U 12 REMARK 465 LEU U 13 REMARK 465 VAL U 14 REMARK 465 GLU U 15 REMARK 465 GLU U 16 REMARK 465 CYS U 17 REMARK 465 ALA U 18 REMARK 465 LEU U 19 REMARK 465 GLY U 20 REMARK 465 GLN U 21 REMARK 465 ASP U 22 REMARK 465 LEU U 23 REMARK 465 CYS U 24 REMARK 465 ARG U 25 REMARK 465 THR U 26 REMARK 465 THR U 27 REMARK 465 VAL U 28 REMARK 465 LEU U 29 REMARK 465 ARG U 30 REMARK 465 GLU U 31 REMARK 465 TRP U 32 REMARK 465 GLN U 33 REMARK 465 ASP U 34 REMARK 465 ASP U 35 REMARK 465 ARG U 36 REMARK 465 GLU U 37 REMARK 465 LEU U 38 REMARK 465 GLU U 39 REMARK 465 VAL U 40 REMARK 465 VAL U 41 REMARK 465 THR U 42 REMARK 465 ARG U 43 REMARK 465 GLY U 44 REMARK 465 CYS U 45 REMARK 465 ALA U 46 REMARK 465 HIS U 47 REMARK 465 SER U 48 REMARK 465 GLU U 49 REMARK 465 LYS U 50 REMARK 465 THR U 51 REMARK 465 ASN U 52 REMARK 465 ARG U 53 REMARK 465 THR U 54 REMARK 465 MET U 55 REMARK 465 SER U 56 REMARK 465 TYR U 57 REMARK 465 ARG U 58 REMARK 465 MET U 59 REMARK 465 GLY U 60 REMARK 465 SER U 61 REMARK 465 MET U 62 REMARK 465 ILE U 63 REMARK 465 ILE U 64 REMARK 465 SER U 65 REMARK 465 LEU U 66 REMARK 465 THR U 67 REMARK 465 GLU U 68 REMARK 465 THR U 69 REMARK 465 VAL U 70 REMARK 465 CYS U 71 REMARK 465 ALA U 72 REMARK 465 THR U 73 REMARK 465 ASN U 74 REMARK 465 LEU U 75 REMARK 465 CYS U 76 REMARK 465 ASN U 77 REMARK 465 ARG U 78 REMARK 465 PRO U 79 REMARK 465 ARG U 80 REMARK 465 PRO U 81 REMARK 465 GLY U 82 REMARK 465 ALA U 83 REMARK 465 ARG U 84 REMARK 465 GLY U 85 REMARK 465 ARG U 86 REMARK 465 ALA U 87 REMARK 465 PHE U 88 REMARK 465 PRO U 89 REMARK 465 GLN U 90 REMARK 465 GLY U 91 REMARK 465 SER U 131 REMARK 465 THR U 132 REMARK 465 GLU U 133 REMARK 465 ARG U 134 REMARK 465 SER U 135 REMARK 465 LEU U 136 REMARK 465 LYS U 137 REMARK 465 ASN U 198 REMARK 465 ASN U 199 REMARK 465 THR U 200 REMARK 465 LEU U 201 REMARK 465 GLY U 202 REMARK 465 ASP U 227 REMARK 465 VAL U 228 REMARK 465 LEU U 229 REMARK 465 GLY U 230 REMARK 465 ASN U 231 REMARK 465 ARG U 232 REMARK 465 GLY U 275 REMARK 465 GLY U 276 REMARK 465 ALA U 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG U 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU U 139 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN U 160 O7 NAG U 301 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG U 108 148.29 -170.49 REMARK 500 HIS U 173 18.37 54.91 REMARK 500 GLU U 206 8.38 -66.09 REMARK 500 GLU U 207 -30.94 -157.82 REMARK 500 THR U 256 -152.98 48.63 REMARK 500 HIS U 257 71.87 -108.43 REMARK 500 ASN U 271 30.67 -96.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 6AEX U 1 277 UNP P35456 UPAR_MOUSE 24 300 SEQRES 1 U 277 LEU GLN CYS MET GLN CYS GLU SER ASN GLN SER CYS LEU SEQRES 2 U 277 VAL GLU GLU CYS ALA LEU GLY GLN ASP LEU CYS ARG THR SEQRES 3 U 277 THR VAL LEU ARG GLU TRP GLN ASP ASP ARG GLU LEU GLU SEQRES 4 U 277 VAL VAL THR ARG GLY CYS ALA HIS SER GLU LYS THR ASN SEQRES 5 U 277 ARG THR MET SER TYR ARG MET GLY SER MET ILE ILE SER SEQRES 6 U 277 LEU THR GLU THR VAL CYS ALA THR ASN LEU CYS ASN ARG SEQRES 7 U 277 PRO ARG PRO GLY ALA ARG GLY ARG ALA PHE PRO GLN GLY SEQRES 8 U 277 ARG TYR LEU GLU CYS ALA SER CYS THR SER LEU ASP GLN SEQRES 9 U 277 SER CYS GLU ARG GLY ARG GLU GLN SER LEU GLN CYS ARG SEQRES 10 U 277 TYR PRO THR GLU HIS CYS ILE GLU VAL VAL THR LEU GLN SEQRES 11 U 277 SER THR GLU ARG SER LEU LYS ASP GLU ASP TYR THR ARG SEQRES 12 U 277 GLY CYS GLY SER LEU PRO GLY CYS PRO GLY THR ALA GLY SEQRES 13 U 277 PHE HIS SER ASN GLN THR PHE HIS PHE LEU LYS CYS CYS SEQRES 14 U 277 ASN TYR THR HIS CYS ASN GLY GLY PRO VAL LEU ASP LEU SEQRES 15 U 277 GLN SER PHE PRO PRO ASN GLY PHE GLN CYS TYR SER CYS SEQRES 16 U 277 GLU GLY ASN ASN THR LEU GLY CYS SER SER GLU GLU ALA SEQRES 17 U 277 SER LEU ILE ASN CYS ARG GLY PRO MET ASN GLN CYS LEU SEQRES 18 U 277 VAL ALA THR GLY LEU ASP VAL LEU GLY ASN ARG SER TYR SEQRES 19 U 277 THR VAL ARG GLY CYS ALA THR ALA SER TRP CYS GLN GLY SEQRES 20 U 277 SER HIS VAL ALA ASP SER PHE PRO THR HIS LEU ASN VAL SEQRES 21 U 277 SER VAL SER CYS CYS HIS GLY SER GLY CYS ASN SER PRO SEQRES 22 U 277 THR GLY GLY ALA HET NAG U 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *27(H2 O) HELIX 1 AA1 ASP U 181 PHE U 185 5 5 HELIX 2 AA2 THR U 241 GLY U 247 1 7 SHEET 1 AA1 9 GLN U 112 CYS U 116 0 SHEET 2 AA1 9 LEU U 94 THR U 100 -1 N CYS U 96 O LEU U 114 SHEET 3 AA1 9 ASP U 140 GLY U 146 -1 O ARG U 143 N CYS U 99 SHEET 4 AA1 9 HIS U 122 LEU U 129 -1 N HIS U 122 O GLY U 146 SHEET 5 AA1 9 PHE U 163 CYS U 169 -1 O PHE U 165 N VAL U 127 SHEET 6 AA1 9 GLY U 153 HIS U 158 -1 N PHE U 157 O HIS U 164 SHEET 7 AA1 9 TYR U 234 ALA U 240 -1 O CYS U 239 N HIS U 158 SHEET 8 AA1 9 GLN U 219 LEU U 226 -1 N LEU U 221 O GLY U 238 SHEET 9 AA1 9 ASN U 259 CYS U 265 -1 O ASN U 259 N LEU U 226 SHEET 1 AA2 2 PRO U 187 SER U 194 0 SHEET 2 AA2 2 SER U 209 ARG U 214 -1 O ILE U 211 N CYS U 192 SSBOND 1 CYS U 96 CYS U 123 1555 1555 2.01 SSBOND 2 CYS U 99 CYS U 106 1555 1555 2.05 SSBOND 3 CYS U 116 CYS U 145 1555 1555 2.03 SSBOND 4 CYS U 151 CYS U 168 1555 1555 2.06 SSBOND 5 CYS U 169 CYS U 174 1555 1555 2.05 SSBOND 6 CYS U 192 CYS U 220 1555 1555 2.08 SSBOND 7 CYS U 195 CYS U 203 1555 1555 2.04 SSBOND 8 CYS U 213 CYS U 239 1555 1555 2.08 SSBOND 9 CYS U 245 CYS U 264 1555 1555 2.03 SSBOND 10 CYS U 265 CYS U 270 1555 1555 2.06 LINK ND2 ASN U 160 C1 NAG U 301 1555 1555 1.59 CISPEP 1 TYR U 118 PRO U 119 0 8.92 CISPEP 2 CYS U 151 PRO U 152 0 -4.64 CRYST1 83.820 83.820 81.398 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012285 0.00000