HEADER CYTOKINE 07-AUG-18 6AEZ TITLE CRYSTAL STRUCTURE OF HUMAN CCL5 TRIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C MOTIF CHEMOKINE 5; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: EOCP,EOSINOPHIL CHEMOTACTIC CYTOKINE,SIS-DELTA,SMALL- COMPND 5 INDUCIBLE CYTOKINE A5,T CELL-SPECIFIC PROTEIN P228,TCP228,T-CELL- COMPND 6 SPECIFIC PROTEIN RANTES; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE CCL5 TRIMER WAS PREPARED BY MIXING NATIVE PROTEIN COMPND 10 (E67) AND MUTANT (S67) WITH MOLAR RATIO OF 1:2.; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: C-C MOTIF CHEMOKINE 5; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: EOCP,EOSINOPHIL CHEMOTACTIC CYTOKINE,SIS-DELTA,SMALL- COMPND 15 INDUCIBLE CYTOKINE A5,T CELL-SPECIFIC PROTEIN P228,TCP228,T-CELL- COMPND 16 SPECIFIC PROTEIN RANTES; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCL5, D17S136E, SCYA5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CCL5, D17S136E, SCYA5; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CCL5, RANTES, CHEMOKINE, OLIGOMER, DIMER, CC-TYPE, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.CHEN,K.M.LI,P.J.CHEN,R.ZARIVACH,Y.J.SUN,S.C.SUE REVDAT 4 22-NOV-23 6AEZ 1 REMARK REVDAT 3 18-MAR-20 6AEZ 1 JRNL REVDAT 2 18-DEC-19 6AEZ 1 JRNL REVDAT 1 07-AUG-19 6AEZ 0 JRNL AUTH Y.C.CHEN,S.P.CHEN,J.Y.LI,P.C.CHEN,Y.Z.LEE,K.M.LI,R.ZARIVACH, JRNL AUTH 2 Y.J.SUN,S.C.SUE JRNL TITL INTEGRATIVE MODEL TO COORDINATE THE OLIGOMERIZATION AND JRNL TITL 2 AGGREGATION MECHANISMS OF CCL5. JRNL REF J.MOL.BIOL. V. 432 1143 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 31931012 JRNL DOI 10.1016/J.JMB.2019.12.049 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.C.CHEN,K.M.LI,R.ZARIVACH,Y.J.SUN,S.C.SUE REMARK 1 TITL HUMAN CCL5 TRIMER: EXPRESSION, PURIFICATION AND INITIAL REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 74 82 2018 REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 29400316 REMARK 1 DOI 10.1107/S2053230X17018544 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 28967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : -1.54000 REMARK 3 B33 (A**2) : 3.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1664 ; 0.028 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1488 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2268 ; 2.480 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3460 ; 1.380 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 7.486 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;34.256 ;21.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;15.829 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.349 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1787 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 364 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 780 ; 2.324 ; 2.143 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 779 ; 2.324 ; 2.145 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 971 ; 3.328 ; 3.198 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 972 ; 3.327 ; 3.196 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 882 ; 3.588 ; 2.777 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 857 ; 3.097 ; 2.655 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1258 ; 4.678 ; 3.777 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1889 ; 8.381 ;28.010 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1842 ; 8.160 ;26.866 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 65 B 6 65 3468 0.11 0.05 REMARK 3 2 A 6 68 C 6 68 3598 0.15 0.05 REMARK 3 3 B 3 65 C 3 65 3542 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8626 32.3662 11.6922 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.1058 REMARK 3 T33: 0.0218 T12: 0.0214 REMARK 3 T13: -0.0031 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.8175 L22: 0.6917 REMARK 3 L33: 3.1679 L12: 0.0380 REMARK 3 L13: 1.5537 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.0350 S13: 0.0802 REMARK 3 S21: -0.0177 S22: -0.0714 S23: -0.0909 REMARK 3 S31: -0.1407 S32: -0.0095 S33: 0.0139 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0018 11.2231 4.1798 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.0803 REMARK 3 T33: 0.0687 T12: 0.0199 REMARK 3 T13: -0.0112 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.3545 L22: 0.9651 REMARK 3 L33: 1.1056 L12: 0.3288 REMARK 3 L13: -0.9845 L23: -0.2389 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.1306 S13: -0.3826 REMARK 3 S21: -0.0516 S22: -0.0663 S23: -0.1142 REMARK 3 S31: 0.0985 S32: -0.1296 S33: 0.1197 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 69 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6220 17.5042 -8.3545 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.1219 REMARK 3 T33: 0.3358 T12: 0.0337 REMARK 3 T13: -0.0208 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.4010 L22: 0.5055 REMARK 3 L33: 1.5603 L12: 0.7150 REMARK 3 L13: 0.6135 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: 0.0509 S13: -0.2690 REMARK 3 S21: -0.0643 S22: 0.0422 S23: -0.0448 REMARK 3 S31: -0.0202 S32: 0.1050 S33: -0.0993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 53.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.88900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EQT MONOMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 5, 16% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.05150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.27800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.27800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.52575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.27800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.27800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 115.57725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.27800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.27800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.52575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.27800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.27800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 115.57725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.05150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL ASSEMBLY: UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.05150 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 28.27800 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 28.27800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 38.52575 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -28.27800 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -28.27800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 38.52575 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 266 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 249 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 TYR A 4 REMARK 465 SER A 5 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 67 REMARK 465 MET B 68 REMARK 465 SER B 69 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 251 O HOH B 243 1.11 REMARK 500 O HOH B 240 O HOH B 245 2.10 REMARK 500 O HOH C 233 O HOH C 253 2.11 REMARK 500 O HOH A 244 O HOH A 262 2.13 REMARK 500 OE2 GLU C 55 O HOH C 201 2.18 REMARK 500 OD2 ASP B 7 NH2 ARG C 48 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA SER A 6 O TYR C 4 7465 2.07 REMARK 500 OG SER A 6 O TYR C 4 7465 2.13 REMARK 500 OG SER A 67 OE1 GLU B 55 5455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 6 N SER A 6 CA 0.164 REMARK 500 SER A 6 CB SER A 6 OG 0.178 REMARK 500 TYR A 62 CG TYR A 62 CD1 -0.094 REMARK 500 PRO B 3 CA PRO B 3 C 0.157 REMARK 500 TYR B 4 N TYR B 4 CA 0.182 REMARK 500 SER B 5 N SER B 5 CA 0.150 REMARK 500 SER B 5 CA SER B 5 CB 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR B 4 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 TYR B 4 N - CA - CB ANGL. DEV. = 18.3 DEGREES REMARK 500 TYR B 4 CA - CB - CG ANGL. DEV. = 28.0 DEGREES REMARK 500 ARG B 48 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 48 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 48 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 4 -34.77 -161.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 3 TYR B 4 -149.88 REMARK 500 PRO C 3 TYR C 4 137.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 258 DISTANCE = 6.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 DBREF 6AEZ A 2 69 UNP P13501 CCL5_HUMAN 24 91 DBREF 6AEZ B 2 69 UNP P13501 CCL5_HUMAN 24 91 DBREF 6AEZ C 2 69 UNP P13501 CCL5_HUMAN 24 91 SEQADV 6AEZ MET A 1 UNP P13501 INITIATING METHIONINE SEQADV 6AEZ SER A 67 UNP P13501 GLU 89 ENGINEERED MUTATION SEQADV 6AEZ MET B 1 UNP P13501 INITIATING METHIONINE SEQADV 6AEZ MET C 1 UNP P13501 INITIATING METHIONINE SEQADV 6AEZ SER C 67 UNP P13501 GLU 89 ENGINEERED MUTATION SEQRES 1 A 69 MET SER PRO TYR SER SER ASP THR THR PRO CYS CYS PHE SEQRES 2 A 69 ALA TYR ILE ALA ARG PRO LEU PRO ARG ALA HIS ILE LYS SEQRES 3 A 69 GLU TYR PHE TYR THR SER GLY LYS CYS SER ASN PRO ALA SEQRES 4 A 69 VAL VAL PHE VAL THR ARG LYS ASN ARG GLN VAL CYS ALA SEQRES 5 A 69 ASN PRO GLU LYS LYS TRP VAL ARG GLU TYR ILE ASN SER SEQRES 6 A 69 LEU SER MET SER SEQRES 1 B 69 MET SER PRO TYR SER SER ASP THR THR PRO CYS CYS PHE SEQRES 2 B 69 ALA TYR ILE ALA ARG PRO LEU PRO ARG ALA HIS ILE LYS SEQRES 3 B 69 GLU TYR PHE TYR THR SER GLY LYS CYS SER ASN PRO ALA SEQRES 4 B 69 VAL VAL PHE VAL THR ARG LYS ASN ARG GLN VAL CYS ALA SEQRES 5 B 69 ASN PRO GLU LYS LYS TRP VAL ARG GLU TYR ILE ASN SER SEQRES 6 B 69 LEU GLU MET SER SEQRES 1 C 69 MET SER PRO TYR SER SER ASP THR THR PRO CYS CYS PHE SEQRES 2 C 69 ALA TYR ILE ALA ARG PRO LEU PRO ARG ALA HIS ILE LYS SEQRES 3 C 69 GLU TYR PHE TYR THR SER GLY LYS CYS SER ASN PRO ALA SEQRES 4 C 69 VAL VAL PHE VAL THR ARG LYS ASN ARG GLN VAL CYS ALA SEQRES 5 C 69 ASN PRO GLU LYS LYS TRP VAL ARG GLU TYR ILE ASN SER SEQRES 6 C 69 LEU SER MET SER HET SO4 A 101 5 HET SO4 A 102 5 HET SO4 B 101 5 HET SO4 B 102 5 HET SO4 B 103 5 HET SO4 C 101 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 HOH *194(H2 O) HELIX 1 AA1 PRO A 21 ALA A 23 5 3 HELIX 2 AA2 LYS A 56 SER A 65 1 10 HELIX 3 AA3 PRO B 21 ALA B 23 5 3 HELIX 4 AA4 LYS B 56 LEU B 66 1 11 HELIX 5 AA5 PRO C 21 ALA C 23 5 3 HELIX 6 AA6 LYS C 56 SER C 67 1 12 SHEET 1 AA1 2 ALA A 14 ILE A 16 0 SHEET 2 AA1 2 ALA B 14 ILE B 16 -1 O TYR B 15 N TYR A 15 SHEET 1 AA2 3 ILE A 25 TYR A 30 0 SHEET 2 AA2 3 VAL A 40 THR A 44 -1 O VAL A 41 N PHE A 29 SHEET 3 AA2 3 GLN A 49 ALA A 52 -1 O VAL A 50 N PHE A 42 SHEET 1 AA3 2 THR B 9 CYS B 11 0 SHEET 2 AA3 2 THR C 9 CYS C 11 -1 O THR C 9 N CYS B 11 SHEET 1 AA4 3 ILE B 25 TYR B 30 0 SHEET 2 AA4 3 VAL B 40 THR B 44 -1 O VAL B 41 N PHE B 29 SHEET 3 AA4 3 GLN B 49 ALA B 52 -1 O ALA B 52 N VAL B 40 SHEET 1 AA5 3 ILE C 25 TYR C 30 0 SHEET 2 AA5 3 VAL C 40 THR C 44 -1 O VAL C 41 N PHE C 29 SHEET 3 AA5 3 GLN C 49 ALA C 52 -1 O ALA C 52 N VAL C 40 SSBOND 1 CYS A 11 CYS A 35 1555 1555 2.06 SSBOND 2 CYS A 12 CYS A 51 1555 1555 2.10 SSBOND 3 CYS B 11 CYS B 35 1555 1555 2.09 SSBOND 4 CYS B 12 CYS B 51 1555 1555 2.08 SSBOND 5 CYS C 11 CYS C 35 1555 1555 2.08 SSBOND 6 CYS C 12 CYS C 51 1555 1555 2.04 SITE 1 AC1 6 HIS A 24 THR A 44 ARG A 45 LYS A 46 SITE 2 AC1 6 ARG A 48 HOH A 201 SITE 1 AC2 3 LYS A 56 LYS A 57 HOH A 202 SITE 1 AC3 3 LYS B 57 ARG B 60 SO4 B 103 SITE 1 AC4 5 HIS B 24 THR B 44 ARG B 45 LYS B 46 SITE 2 AC4 5 ARG B 48 SITE 1 AC5 5 GLU A 55 LYS B 56 LYS B 57 SO4 B 101 SITE 2 AC5 5 HOH B 213 SITE 1 AC6 3 LYS C 56 LYS C 57 HOH C 203 CRYST1 56.556 56.556 154.103 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006489 0.00000