HEADER LIGASE 11-AUG-18 6AGG TITLE CRYSTAL STRUCTURE OF AGMATINE-AMPPCP-MG COMPLEXED TIAS (TRNAILE2 TITLE 2 AGMATIDINE SYNTHETASE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(ILE2) 2-AGMATINYLCYTIDINE SYNTHETASE TIAS; COMPND 3 CHAIN: Z; COMPND 4 SYNONYM: TRNA(ILE2)-AGM2C SYNTHETASE,TRNA(ILE2) AGMATIDINE COMPND 5 SYNTHETASE; COMPND 6 EC: 6.3.4.22; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS (STRAIN ATCC 49558 / VC- SOURCE 3 16 / DSM 4304 / JCM 9628 / NBRC 100126); SOURCE 4 ORGANISM_TAXID: 224325; SOURCE 5 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 6 GENE: TIAS, AF_2259; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC RIBBON, CONFORMATIONAL CHANGE, TIAS, TRNA MODIFICATION, ZINC KEYWDS 2 FINGER ENGINEERING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.DONG,W.M.GONG REVDAT 3 23-OCT-24 6AGG 1 LINK REVDAT 2 24-OCT-18 6AGG 1 JRNL REVDAT 1 05-SEP-18 6AGG 0 JRNL AUTH J.DONG,F.LI,F.GAO,J.WEI,Y.LIN,Y.ZHANG,J.LOU,G.LIU,Y.DONG, JRNL AUTH 2 L.LIU,H.LIU,J.WANG,W.GONG JRNL TITL STRUCTURE OF TRNA-MODIFYING ENZYME TIAS AND MOTIONS OF ITS JRNL TITL 2 SUBSTRATE BINDING ZINC RIBBON. JRNL REF J. MOL. BIOL. V. 430 4183 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30121296 JRNL DOI 10.1016/J.JMB.2018.08.015 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 14667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0964 - 4.6229 0.98 2974 138 0.2013 0.2704 REMARK 3 2 4.6229 - 3.6717 0.98 2787 152 0.1977 0.2933 REMARK 3 3 3.6717 - 3.2082 0.99 2782 139 0.2173 0.3237 REMARK 3 4 3.2082 - 2.9152 0.99 2729 153 0.2206 0.3127 REMARK 3 5 2.9152 - 2.7064 0.96 2660 153 0.3114 0.4248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 67.78 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.67120 REMARK 3 B22 (A**2) : 16.67120 REMARK 3 B33 (A**2) : -33.34250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3486 REMARK 3 ANGLE : 1.079 4713 REMARK 3 CHIRALITY : 0.073 513 REMARK 3 PLANARITY : 0.004 613 REMARK 3 DIHEDRAL : 16.706 1327 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 1:44) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9348 13.0992 33.5623 REMARK 3 T TENSOR REMARK 3 T11: 0.7613 T22: 0.3400 REMARK 3 T33: 0.5772 T12: 0.2019 REMARK 3 T13: -0.0658 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 4.0370 L22: 4.6433 REMARK 3 L33: 6.7262 L12: 2.0521 REMARK 3 L13: 1.3905 L23: -0.5381 REMARK 3 S TENSOR REMARK 3 S11: 0.2430 S12: 0.3075 S13: -0.0820 REMARK 3 S21: -0.8248 S22: 0.2863 S23: 0.6936 REMARK 3 S31: -0.3254 S32: -0.0319 S33: -0.3827 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 45:67) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0612 6.6215 38.5120 REMARK 3 T TENSOR REMARK 3 T11: 0.6881 T22: 0.5139 REMARK 3 T33: 0.3683 T12: 0.1460 REMARK 3 T13: 0.1909 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 1.9415 L22: 4.9288 REMARK 3 L33: 5.3291 L12: 2.2849 REMARK 3 L13: 0.2843 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: -0.5270 S12: 1.1813 S13: 0.4973 REMARK 3 S21: -0.0246 S22: 0.1098 S23: -0.8943 REMARK 3 S31: -0.5761 S32: 0.3953 S33: 0.3089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 68:128) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7990 1.4158 34.8482 REMARK 3 T TENSOR REMARK 3 T11: 0.5983 T22: 0.3623 REMARK 3 T33: 0.5537 T12: 0.1546 REMARK 3 T13: 0.0554 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 2.6873 L22: 5.6634 REMARK 3 L33: 7.4287 L12: 1.9206 REMARK 3 L13: -0.6277 L23: -1.0530 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.0588 S13: -0.4176 REMARK 3 S21: -0.2767 S22: 0.1246 S23: 0.0231 REMARK 3 S31: -0.0127 S32: -0.5229 S33: -0.1890 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 129:162) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1129 4.6654 39.2232 REMARK 3 T TENSOR REMARK 3 T11: 0.5089 T22: 0.4215 REMARK 3 T33: 0.5726 T12: 0.1063 REMARK 3 T13: -0.0131 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.6379 L22: 5.2730 REMARK 3 L33: 5.5135 L12: 3.2483 REMARK 3 L13: 1.7139 L23: -0.2677 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: -0.2441 S13: 0.0063 REMARK 3 S21: -0.2507 S22: 0.4576 S23: 0.1998 REMARK 3 S31: -0.0313 S32: -0.1468 S33: -0.1383 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 163:238) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8818 23.9148 42.6789 REMARK 3 T TENSOR REMARK 3 T11: 1.1064 T22: 0.6349 REMARK 3 T33: 0.5790 T12: -0.2559 REMARK 3 T13: -0.1195 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.6374 L22: 3.4539 REMARK 3 L33: 5.5768 L12: -0.2989 REMARK 3 L13: 0.5068 L23: 0.3283 REMARK 3 S TENSOR REMARK 3 S11: -0.3624 S12: -0.3282 S13: 0.8988 REMARK 3 S21: 0.4247 S22: 0.0239 S23: -0.3463 REMARK 3 S31: -1.6655 S32: 1.4355 S33: 0.2158 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 239:264) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0869 2.4536 52.2419 REMARK 3 T TENSOR REMARK 3 T11: 0.4818 T22: 0.3679 REMARK 3 T33: 0.4902 T12: 0.1551 REMARK 3 T13: 0.0702 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 3.7564 L22: 1.0218 REMARK 3 L33: 4.2221 L12: 0.2698 REMARK 3 L13: -0.0326 L23: 0.7483 REMARK 3 S TENSOR REMARK 3 S11: 0.2155 S12: -0.4435 S13: -0.6001 REMARK 3 S21: -0.0050 S22: -0.1265 S23: 0.5325 REMARK 3 S31: -0.0112 S32: 0.1734 S33: -0.0500 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 265:327) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5332 -1.7970 61.1095 REMARK 3 T TENSOR REMARK 3 T11: 0.4175 T22: 1.0207 REMARK 3 T33: 0.6650 T12: 0.2452 REMARK 3 T13: -0.1281 T23: 0.5004 REMARK 3 L TENSOR REMARK 3 L11: 0.5825 L22: 2.0404 REMARK 3 L33: 2.4116 L12: 0.1748 REMARK 3 L13: 0.1035 L23: 0.3854 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: -1.1358 S13: -0.4956 REMARK 3 S21: 0.1892 S22: -0.2832 S23: -0.8665 REMARK 3 S31: 0.2557 S32: 1.2042 S33: -0.0913 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 328:353) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5855 1.0301 73.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.6808 T22: 1.1767 REMARK 3 T33: 0.7225 T12: 0.2452 REMARK 3 T13: -0.1092 T23: 0.1783 REMARK 3 L TENSOR REMARK 3 L11: 2.2140 L22: 0.0735 REMARK 3 L33: 1.0859 L12: 0.4264 REMARK 3 L13: 1.5623 L23: 0.2981 REMARK 3 S TENSOR REMARK 3 S11: 0.2419 S12: -0.5433 S13: 0.0563 REMARK 3 S21: 0.3716 S22: 0.5070 S23: 0.0304 REMARK 3 S31: 0.2496 S32: -0.3613 S33: -0.8680 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 354:384) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0748 1.8491 92.1384 REMARK 3 T TENSOR REMARK 3 T11: 1.0458 T22: 1.1841 REMARK 3 T33: 0.8419 T12: 0.0677 REMARK 3 T13: -0.0502 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 4.4025 L22: 4.3025 REMARK 3 L33: 5.8146 L12: -0.1177 REMARK 3 L13: 2.5051 L23: -0.2108 REMARK 3 S TENSOR REMARK 3 S11: -0.0816 S12: -1.3578 S13: -0.1809 REMARK 3 S21: -0.3777 S22: 0.0803 S23: -1.0966 REMARK 3 S31: 0.2505 S32: -0.8108 S33: -0.2862 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'Z' AND (RESSEQ 385:420) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3630 12.0083 62.6605 REMARK 3 T TENSOR REMARK 3 T11: 0.9652 T22: 1.0630 REMARK 3 T33: 0.5989 T12: -0.0892 REMARK 3 T13: -0.0660 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.8811 L22: 1.6662 REMARK 3 L33: 3.9095 L12: -0.5322 REMARK 3 L13: 2.3183 L23: -1.6581 REMARK 3 S TENSOR REMARK 3 S11: -0.1332 S12: -0.5842 S13: 0.0083 REMARK 3 S21: 0.3848 S22: 0.0293 S23: -0.1703 REMARK 3 S31: -0.8977 S32: 0.8642 S33: -0.0116 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.7-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 27.30 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES-NA PH7.0-7.2, 0.5M NH4AC, REMARK 280 0.2M MGCL2, 1.5-2.5% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.41100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.89300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.89300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.70550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.89300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.89300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.11650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.89300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.89300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.70550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.89300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.89300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 158.11650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.41100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR Z 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS Z 52 CG CD CE NZ REMARK 470 THR Z 53 OG1 CG2 REMARK 470 ARG Z 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS Z 89 CG CD CE NZ REMARK 470 ARG Z 270 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP Z 8 -169.43 -169.00 REMARK 500 THR Z 19 -49.69 109.44 REMARK 500 TYR Z 51 9.47 100.42 REMARK 500 LYS Z 52 -86.49 -78.19 REMARK 500 ASN Z 56 72.97 -155.09 REMARK 500 ASP Z 115 -156.37 -127.85 REMARK 500 LYS Z 137 -110.34 -140.33 REMARK 500 PHE Z 169 135.73 149.78 REMARK 500 SER Z 179 -36.70 -37.26 REMARK 500 ASP Z 200 50.09 33.67 REMARK 500 PRO Z 209 32.51 -81.37 REMARK 500 PRO Z 235 127.13 -28.93 REMARK 500 ASP Z 237 -74.44 -91.52 REMARK 500 TYR Z 264 28.90 82.57 REMARK 500 THR Z 274 -79.47 -96.95 REMARK 500 GLU Z 281 -76.02 -49.69 REMARK 500 LYS Z 305 -113.86 61.42 REMARK 500 LEU Z 313 40.35 -82.07 REMARK 500 LYS Z 316 134.74 -38.36 REMARK 500 VAL Z 339 -85.18 -78.47 REMARK 500 SER Z 354 -71.95 -84.66 REMARK 500 ARG Z 364 -99.30 -30.05 REMARK 500 LYS Z 371 -39.98 -35.90 REMARK 500 ARG Z 374 42.24 -93.31 REMARK 500 PRO Z 391 172.80 -54.15 REMARK 500 VAL Z 413 161.50 -28.40 REMARK 500 HIS Z 417 77.50 -106.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 508 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 8 OD2 REMARK 620 2 TPO Z 18 O2P 134.4 REMARK 620 3 GLY Z 57 O 124.5 85.4 REMARK 620 4 ACP Z 502 O1B 135.9 84.6 67.3 REMARK 620 5 ACP Z 502 O2A 83.2 77.6 151.5 88.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 11 OD2 REMARK 620 2 TPO Z 18 O1P 56.3 REMARK 620 3 TPO Z 18 O2P 107.2 55.5 REMARK 620 4 ACP Z 502 O1A 94.3 127.6 107.8 REMARK 620 5 ACP Z 502 O2A 135.5 120.0 68.9 50.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN Z 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Z 352 SG REMARK 620 2 CYS Z 355 SG 83.1 REMARK 620 3 CYS Z 370 SG 85.1 93.3 REMARK 620 4 CYS Z 373 SG 114.2 148.8 113.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN Z 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP Z 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 Z 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT Z 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT Z 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 Z 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG Z 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG Z 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XOB RELATED DB: PDB DBREF 6AGG Z 1 420 UNP O28025 TIAS_ARCFU 1 420 SEQRES 1 Z 420 MET ARG VAL TRP VAL GLY ILE ASP ASP THR ASP SER SER SEQRES 2 Z 420 ARG GLY MET CYS TPO THR TYR LEU ALA VAL LEU ALA MET SEQRES 3 Z 420 GLU ARG VAL GLU ARG GLU LEU GLY LYS VAL ILE GLY PHE SEQRES 4 Z 420 PRO ARG LEU ILE ARG LEU ASN PRO THR ILE PRO TYR LYS SEQRES 5 Z 420 THR ARG GLY ASN GLY ALA VAL SER PHE LEU VAL GLU VAL SEQRES 6 Z 420 ASP ASP VAL GLY GLU LEU VAL ASP VAL VAL ASN GLU VAL SEQRES 7 Z 420 ILE ILE GLU HIS ALA MET LEU ASP ASP GLU LYS THR ASN SEQRES 8 Z 420 PRO GLY ALA VAL PHE VAL ASP GLU GLU LEU ALA VAL LYS SEQRES 9 Z 420 LEU LYS PRO PHE ALA ASP LYS ALA ILE LYS ASP VAL LEU SEQRES 10 Z 420 GLN ILE ASP GLU ALA LEU PHE VAL ILE GLY LYS TYR PHE SEQRES 11 Z 420 ILE PRO HIS LEU ARG HIS LYS LYS GLY ARG GLY LEU ILE SEQRES 12 Z 420 GLY ALA LEU ALA ALA VAL GLY ALA GLU LEU GLU ASP PHE SEQRES 13 Z 420 THR LEU GLU LEU ILE ALA TYR ARG TYR PRO GLU ARG PHE SEQRES 14 Z 420 GLY THR GLU ARG GLU TYR ASP GLU GLU SER PHE PHE ASP SEQRES 15 Z 420 MET ASP TYR GLU LEU TYR PRO GLN THR PHE ASP ASN VAL SEQRES 16 Z 420 ASP TRP CYS ASN ASP VAL VAL VAL CYS ILE PRO ASN THR SEQRES 17 Z 420 PRO CYS PRO VAL LEU TYR GLY ILE ARG GLY GLU SER VAL SEQRES 18 Z 420 GLU ALA LEU TYR LYS ALA MET GLU SER VAL LYS THR GLU SEQRES 19 Z 420 PRO VAL ASP ARG ARG MET ILE PHE VAL THR ASN HIS ALA SEQRES 20 Z 420 THR ASP MET HIS LEU ILE GLY GLU GLU GLU VAL HIS ARG SEQRES 21 Z 420 LEU GLU ASN TYR ARG SER TYR ARG LEU ARG GLY ARG VAL SEQRES 22 Z 420 THR LEU GLU PRO TYR ASP ILE GLU GLY GLY HIS VAL PHE SEQRES 23 Z 420 PHE GLU ILE ASP THR LYS PHE GLY SER VAL LYS CYS ALA SEQRES 24 Z 420 ALA PHE GLU PRO THR LYS GLN PHE ARG ASN VAL ILE ARG SEQRES 25 Z 420 LEU LEU ARG LYS GLY ASP VAL VAL GLU VAL TYR GLY SER SEQRES 26 Z 420 MET LYS LYS ASP THR ILE ASN LEU GLU LYS ILE GLN ILE SEQRES 27 Z 420 VAL GLU LEU ALA GLU ILE TRP VAL GLU LYS ASN PRO ILE SEQRES 28 Z 420 CYS PRO SER CYS GLY ARG ARG MET GLU SER ALA GLY ARG SEQRES 29 Z 420 GLY GLN GLY PHE ARG CYS LYS LYS CYS ARG THR LYS ALA SEQRES 30 Z 420 ASP GLU LYS LEU ARG GLU LYS VAL GLU ARG GLU LEU GLN SEQRES 31 Z 420 PRO GLY PHE TYR GLU VAL PRO PRO SER ALA ARG ARG HIS SEQRES 32 Z 420 LEU SER LYS PRO LEU ILE ARG MET ASN VAL GLU GLY ARG SEQRES 33 Z 420 HIS ILE PHE ARG MODRES 6AGG TPO Z 18 THR MODIFIED RESIDUE HET TPO Z 18 11 HET ZN Z 501 1 HET ACP Z 502 31 HET AG2 Z 503 9 HET ACT Z 504 4 HET ACT Z 505 4 HET NH4 Z 506 1 HET MG Z 507 1 HET MG Z 508 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM AG2 AGMATINE HETNAM ACT ACETATE ION HETNAM NH4 AMMONIUM ION HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 ACP C11 H18 N5 O12 P3 FORMUL 4 AG2 C5 H14 N4 FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 NH4 H4 N 1+ FORMUL 8 MG 2(MG 2+) FORMUL 10 HOH *8(H2 O) HELIX 1 AA1 THR Z 19 LEU Z 33 1 15 HELIX 2 AA2 ASP Z 67 ALA Z 83 1 17 HELIX 3 AA3 GLU Z 99 VAL Z 103 1 5 HELIX 4 AA4 LEU Z 105 ASP Z 115 1 11 HELIX 5 AA5 GLN Z 118 TYR Z 129 1 12 HELIX 6 AA6 ARG Z 140 ALA Z 151 1 12 HELIX 7 AA7 ASP Z 176 TYR Z 188 1 13 HELIX 8 AA8 SER Z 220 VAL Z 231 1 12 HELIX 9 AA9 GLU Z 256 VAL Z 258 5 3 HELIX 10 AB1 PHE Z 301 LYS Z 305 5 5 HELIX 11 AB2 GLN Z 306 LEU Z 313 1 8 HELIX 12 AB3 PRO Z 397 ARG Z 401 5 5 HELIX 13 AB4 PRO Z 407 MET Z 411 5 5 SHEET 1 AA1 8 HIS Z 133 ARG Z 135 0 SHEET 2 AA1 8 GLY Z 93 ASP Z 98 -1 N ALA Z 94 O LEU Z 134 SHEET 3 AA1 8 ARG Z 2 ASP Z 8 -1 N TRP Z 4 O VAL Z 97 SHEET 4 AA1 8 GLY Z 57 GLU Z 64 -1 O VAL Z 59 N ILE Z 7 SHEET 5 AA1 8 LYS Z 35 ARG Z 44 -1 N ARG Z 41 O SER Z 60 SHEET 6 AA1 8 ARG Z 239 THR Z 244 1 O VAL Z 243 N LEU Z 42 SHEET 7 AA1 8 THR Z 157 TYR Z 163 -1 N THR Z 157 O THR Z 244 SHEET 8 AA1 8 VAL Z 212 GLY Z 218 -1 O TYR Z 214 N ALA Z 162 SHEET 1 AA2 2 VAL Z 195 ASP Z 196 0 SHEET 2 AA2 2 VAL Z 201 VAL Z 202 -1 O VAL Z 201 N ASP Z 196 SHEET 1 AA3 5 LEU Z 252 GLY Z 254 0 SHEET 2 AA3 5 ARG Z 265 VAL Z 273 1 O SER Z 266 N ILE Z 253 SHEET 3 AA3 5 VAL Z 319 LYS Z 327 -1 O MET Z 326 N ARG Z 265 SHEET 4 AA3 5 THR Z 330 ILE Z 338 -1 O GLU Z 334 N TYR Z 323 SHEET 5 AA3 5 GLY Z 392 GLU Z 395 -1 O GLY Z 392 N ILE Z 338 SHEET 1 AA4 8 LEU Z 252 GLY Z 254 0 SHEET 2 AA4 8 ARG Z 265 VAL Z 273 1 O SER Z 266 N ILE Z 253 SHEET 3 AA4 8 VAL Z 285 THR Z 291 -1 O ASP Z 290 N ARG Z 272 SHEET 4 AA4 8 TYR Z 278 ASP Z 279 -1 N TYR Z 278 O PHE Z 286 SHEET 5 AA4 8 VAL Z 285 THR Z 291 -1 O PHE Z 286 N TYR Z 278 SHEET 6 AA4 8 GLY Z 294 ALA Z 300 -1 O CYS Z 298 N PHE Z 287 SHEET 7 AA4 8 THR Z 330 ILE Z 338 1 O ILE Z 331 N LYS Z 297 SHEET 8 AA4 8 GLY Z 392 GLU Z 395 -1 O GLY Z 392 N ILE Z 338 SHEET 1 AA5 2 TRP Z 345 LYS Z 348 0 SHEET 2 AA5 2 LEU Z 381 LYS Z 384 -1 O GLU Z 383 N VAL Z 346 SHEET 1 AA6 3 GLU Z 360 SER Z 361 0 SHEET 2 AA6 3 PHE Z 368 CYS Z 370 -1 O ARG Z 369 N GLU Z 360 SHEET 3 AA6 3 THR Z 375 ALA Z 377 -1 O ALA Z 377 N PHE Z 368 LINK C CYS Z 17 N TPO Z 18 1555 1555 1.33 LINK C TPO Z 18 N THR Z 19 1555 1555 1.33 LINK OD2 ASP Z 8 MG MG Z 508 1555 1555 2.53 LINK OD2 ASP Z 11 MG MG Z 507 1555 1555 2.54 LINK O1P TPO Z 18 MG MG Z 507 1555 1555 2.28 LINK O2P TPO Z 18 MG MG Z 507 1555 1555 2.95 LINK O2P TPO Z 18 MG MG Z 508 1555 1555 2.37 LINK O GLY Z 57 MG MG Z 508 1555 1555 2.67 LINK SG CYS Z 352 ZN ZN Z 501 1555 1555 2.57 LINK SG CYS Z 355 ZN ZN Z 501 1555 1555 2.60 LINK SG CYS Z 370 ZN ZN Z 501 1555 1555 2.38 LINK SG CYS Z 373 ZN ZN Z 501 1555 1555 2.66 LINK O1A ACP Z 502 MG MG Z 507 1555 1555 2.48 LINK O2A ACP Z 502 MG MG Z 507 1555 1555 2.87 LINK O1B ACP Z 502 MG MG Z 508 1555 1555 2.50 LINK O2A ACP Z 502 MG MG Z 508 1555 1555 2.85 CISPEP 1 THR Z 53 ARG Z 54 0 0.95 CISPEP 2 TYR Z 188 PRO Z 189 0 12.94 SITE 1 AC1 4 CYS Z 352 CYS Z 355 CYS Z 370 CYS Z 373 SITE 1 AC2 21 ASP Z 8 ASP Z 9 ASP Z 11 TPO Z 18 SITE 2 AC2 21 LEU Z 45 ASN Z 46 TYR Z 51 ARG Z 54 SITE 3 AC2 21 GLY Z 55 ASN Z 56 GLY Z 57 ALA Z 112 SITE 4 AC2 21 ASP Z 115 VAL Z 116 LEU Z 117 ARG Z 140 SITE 5 AC2 21 GLY Z 141 ILE Z 143 GLY Z 144 MG Z 507 SITE 6 AC2 21 MG Z 508 SITE 1 AC3 8 GLU Z 159 ASP Z 193 ASN Z 194 VAL Z 203 SITE 2 AC3 8 CYS Z 204 GLY Z 215 ARG Z 217 SER Z 399 SITE 1 AC4 1 ARG Z 268 SITE 1 AC5 4 ARG Z 41 GLY Z 150 ALA Z 151 NH4 Z 506 SITE 1 AC6 4 ALA Z 102 VAL Z 103 GLY Z 150 ACT Z 505 SITE 1 AC7 5 ASP Z 9 THR Z 10 ASP Z 11 TPO Z 18 SITE 2 AC7 5 ACP Z 502 SITE 1 AC8 6 ASP Z 8 ASP Z 9 TPO Z 18 GLY Z 57 SITE 2 AC8 6 ALA Z 58 ACP Z 502 CRYST1 69.786 69.786 210.822 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004743 0.00000