HEADER LYASE 23-AUG-18 6AII TITLE CATALYTIC DOMAIN OF PDAGAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AGARASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: WP_053404800.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERSICOBACTER; SOURCE 3 ORGANISM_TAXID: 59740; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AGARASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.TEH,N.H.FAZLI REVDAT 3 22-NOV-23 6AII 1 REMARK REVDAT 2 08-APR-20 6AII 1 JRNL REVDAT 1 28-AUG-19 6AII 0 JRNL AUTH A.H.TEH,N.H.FAZLI,G.FURUSAWA JRNL TITL CRYSTAL STRUCTURE OF A NEOAGAROBIOSE-PRODUCING GH16 FAMILY JRNL TITL 2 BETA-AGARASE FROM PERSICOBACTER SP. CCB-QB2. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 104 633 2020 JRNL REFN ESSN 1432-0614 JRNL PMID 31784792 JRNL DOI 10.1007/S00253-019-10237-Y REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 58945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3104 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2779 ; 0.015 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2288 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3791 ; 1.846 ; 1.735 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5365 ; 0.640 ; 1.715 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 7.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.017 ;21.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;12.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.119 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3205 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1323 ; 2.182 ; 2.306 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1324 ; 2.182 ; 2.307 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1653 ; 3.010 ; 3.451 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1654 ; 3.013 ; 3.451 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1456 ; 3.337 ; 2.633 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1457 ; 3.336 ; 2.633 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2137 ; 4.804 ; 3.818 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3234 ; 5.962 ;29.234 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3153 ; 5.810 ;28.538 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1300008838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 34.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.390 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.41 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4ASM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 20,000, 0.1 M SODIUM HEPES PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.02500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.38950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.38950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.51250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.38950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.38950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.53750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.38950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.38950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.51250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.38950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.38950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.53750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 877 O HOH A 910 1.82 REMARK 500 O HOH A 695 O HOH A 886 2.06 REMARK 500 O HOH A 613 O HOH A 912 2.07 REMARK 500 O HOH A 775 O HOH A 926 2.12 REMARK 500 O HOH A 930 O HOH A 954 2.15 REMARK 500 O HOH A 629 O HOH A 716 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 731 O HOH A 917 3545 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 390 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 34.09 -78.70 REMARK 500 HIS A 403 43.82 -94.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 275 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 955 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 6.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD2 REMARK 620 2 ASP A 122 O 88.5 REMARK 620 3 ASN A 124 OD1 85.5 71.1 REMARK 620 4 GLY A 166 O 167.5 99.5 88.0 REMARK 620 5 ASP A 408 O 99.9 70.6 141.1 91.9 REMARK 620 6 ASP A 408 OD1 91.4 143.0 145.7 87.9 73.1 REMARK 620 7 HOH A 825 O 79.9 141.6 71.6 87.9 147.3 74.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 DBREF 6AII A 93 426 PDB 6AII 6AII 93 426 SEQRES 1 A 334 MET GLN ALA GLN ASP TRP ALA GLY ILE PRO VAL PRO ALA SEQRES 2 A 334 ASP PRO GLY ASN GLY LYS GLN TRP LYS LEU GLN ALA ASP SEQRES 3 A 334 MET SER ASP ASP PHE ASN TYR ASP PHE PRO ALA ASN LYS SEQRES 4 A 334 GLU GLU THR TYR ILE ALA GLY LYS TRP LYS ASN PHE TRP SEQRES 5 A 334 HIS ASN SER TRP ASP GLY PRO GLY PRO THR GLN TRP ARG SEQRES 6 A 334 HIS GLU ASN VAL SER VAL SER ASN GLY HIS MET ASN ILE SEQRES 7 A 334 VAL ALA SER ARG ASN GLY ASN THR LYS THR PHE ARG ASN SEQRES 8 A 334 SER HIS ASP GLY THR TYR HIS THR LEU PRO ALA THR GLN SEQRES 9 A 334 MET GLY CYS VAL VAL SER LYS GLY HIS VAL GLN TYR PRO SEQRES 10 A 334 VAL PHE VAL GLU ALA ARG VAL LYS ILE ALA ASP ALA VAL SEQRES 11 A 334 PHE ALA ASN ASN VAL TRP MET ILE SER ASP ASP ASP TYR SEQRES 12 A 334 GLU GLU ILE ASP ILE CYS GLU ASN TYR GLY GLY LEU GLY SEQRES 13 A 334 ASP PRO GLY ARG THR GLY THR ALA MET ASN ALA TRP PHE SEQRES 14 A 334 ALA LYS HIS ILE HIS LEU SER HIS HIS VAL PHE ASN ASN SEQRES 15 A 334 ARG HIS LEU THR ASN PHE ASP ASP TYR GLN PRO ARG ASP SEQRES 16 A 334 GLU GLU GLY VAL TYR GLY THR TRP TYR TYR GLU ASN GLY SEQRES 17 A 334 ARG THR ASP TRP ALA GLY GLU TYR SER THR ILE GLY VAL SEQRES 18 A 334 TYR TRP LYS ASP PRO ASN HIS LEU GLU TYR TYR ILE ASN SEQRES 19 A 334 GLY LYS TRP VAL ARG THR LEU SER GLY LYS ASN TYR SER SEQRES 20 A 334 TYR LEU ASP PRO ASP GLY LYS LEU ILE GLU ALA SER ALA SEQRES 21 A 334 ASP PHE ASN VAL LEU ASP LYS TYR ASN TYR THR ASN GLY SEQRES 22 A 334 LYS GLY LEU THR LYS PRO MET LYS LEU ILE ILE ASN ILE SEQRES 23 A 334 GLU ALA GLN ASP TRP ASN ALA LEU ALA GLY ARG TYR PRO SEQRES 24 A 334 THR ASP GLY GLU ILE TYR GLY ARG PRO GLU ASP HIS ILE SEQRES 25 A 334 MET LYS VAL ASP TRP ILE ARG VAL TYR THR PRO GLU VAL SEQRES 26 A 334 VAL THR GLY HIS HIS HIS HIS HIS HIS HET CA A 501 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *356(H2 O) HELIX 1 AA1 ALA A 117 SER A 120 5 4 HELIX 2 AA2 THR A 253 MET A 257 5 5 HELIX 3 AA3 ASN A 258 LYS A 263 1 6 HELIX 4 AA4 ARG A 286 GLY A 290 5 5 HELIX 5 AA5 GLN A 381 ALA A 387 1 7 HELIX 6 AA6 THR A 392 ARG A 399 1 8 HELIX 7 AA7 PRO A 400 ASP A 402 5 3 SHEET 1 AA1 4 LYS A 111 LEU A 115 0 SHEET 2 AA1 4 ILE A 404 VAL A 417 -1 O THR A 414 N LYS A 114 SHEET 3 AA1 4 HIS A 167 VAL A 171 -1 N ILE A 170 O MET A 405 SHEET 4 AA1 4 VAL A 161 SER A 164 -1 N SER A 162 O ASN A 169 SHEET 1 AA2 8 LYS A 111 LEU A 115 0 SHEET 2 AA2 8 ILE A 404 VAL A 417 -1 O THR A 414 N LYS A 114 SHEET 3 AA2 8 VAL A 210 LYS A 217 -1 N GLU A 213 O ARG A 411 SHEET 4 AA2 8 SER A 309 ASP A 317 -1 O SER A 309 N VAL A 216 SHEET 5 AA2 8 HIS A 320 ILE A 325 -1 O GLU A 322 N TYR A 314 SHEET 6 AA2 8 LYS A 328 SER A 334 -1 O ARG A 331 N TYR A 323 SHEET 7 AA2 8 ASN A 337 LEU A 341 -1 O ASN A 337 N SER A 334 SHEET 8 AA2 8 LEU A 347 SER A 351 -1 O ALA A 350 N TYR A 338 SHEET 1 AA3 8 TYR A 135 ILE A 136 0 SHEET 2 AA3 8 TRP A 140 LYS A 141 -1 O TRP A 140 N ILE A 136 SHEET 3 AA3 8 CYS A 199 SER A 202 -1 O VAL A 201 N LYS A 141 SHEET 4 AA3 8 MET A 372 GLU A 379 -1 O LEU A 374 N SER A 202 SHEET 5 AA3 8 ALA A 224 SER A 231 -1 N TRP A 228 O ILE A 375 SHEET 6 AA3 8 GLU A 236 ASN A 243 -1 O ASN A 243 N ASN A 225 SHEET 7 AA3 8 ILE A 265 ASN A 273 -1 O HIS A 266 N GLU A 242 SHEET 8 AA3 8 ASP A 281 TYR A 283 -1 O TYR A 283 N VAL A 271 SHEET 1 AA4 8 TYR A 135 ILE A 136 0 SHEET 2 AA4 8 TRP A 140 LYS A 141 -1 O TRP A 140 N ILE A 136 SHEET 3 AA4 8 CYS A 199 SER A 202 -1 O VAL A 201 N LYS A 141 SHEET 4 AA4 8 MET A 372 GLU A 379 -1 O LEU A 374 N SER A 202 SHEET 5 AA4 8 ALA A 224 SER A 231 -1 N TRP A 228 O ILE A 375 SHEET 6 AA4 8 GLU A 236 ASN A 243 -1 O ASN A 243 N ASN A 225 SHEET 7 AA4 8 ILE A 265 ASN A 273 -1 O HIS A 266 N GLU A 242 SHEET 8 AA4 8 TRP A 295 TYR A 296 -1 O TYR A 296 N ILE A 265 SHEET 1 AA5 2 THR A 154 TRP A 156 0 SHEET 2 AA5 2 THR A 195 MET A 197 1 O THR A 195 N GLN A 155 SHEET 1 AA6 2 THR A 178 ARG A 182 0 SHEET 2 AA6 2 TYR A 189 PRO A 193 -1 O HIS A 190 N PHE A 181 LINK OD2 ASP A 97 CA CA A 501 1555 1555 2.28 LINK O ASP A 122 CA CA A 501 1555 1555 2.34 LINK OD1 ASN A 124 CA CA A 501 1555 1555 2.53 LINK O GLY A 166 CA CA A 501 1555 1555 2.22 LINK O ASP A 408 CA CA A 501 1555 1555 2.65 LINK OD1 ASP A 408 CA CA A 501 1555 1555 2.33 LINK CA CA A 501 O HOH A 825 1555 1555 2.52 CISPEP 1 TYR A 208 PRO A 209 0 -14.73 SITE 1 AC1 6 ASP A 97 ASP A 122 ASN A 124 GLY A 166 SITE 2 AC1 6 ASP A 408 HOH A 825 CRYST1 76.779 76.779 166.050 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006022 0.00000