HEADER OXIDOREDUCTASE 27-AUG-18 6AJB TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI GLYCOSOMAL ISOCITRATE TITLE 2 DEHYDROGENASE IN COMPLEX WITH NADH, ALPHA-KETOGLUTARATE AND CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.1.1.42; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: ILTAT 1.4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS TRYPANOSOMA BRUCEI, GLYCOSOME, METABOLISM, ISOCITRATE DEHYDROGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,D.K.INAOKA,T.SHIBA,E.O.BALOGUN,N.ZIEBART,S.ALLMAN,Y.WATANABE, AUTHOR 2 T.NOZAKI,M.BOSHART,F.BRINGAUD,S.HARADA,K.KITA REVDAT 2 22-NOV-23 6AJB 1 LINK REVDAT 1 28-AUG-19 6AJB 0 JRNL AUTH X.WANG,D.K.INAOKA,T.SHIBA,E.O.BALOGUN,N.ZIEBART,S.ALLMAN, JRNL AUTH 2 Y.WATANABE,T.NOZAKI,M.BOSHART,F.BRINGAUD,S.HARADA,K.KITA JRNL TITL BIOCHEMICAL CHARACTERIZATION OF A NOVEL TRYPANOSOMA BRUCEI JRNL TITL 2 GLYCOSOMAL ISOCITRATE DEHYDROGENASE WITH DUAL COENZYME JRNL TITL 3 SPECIFICITY (NADP+/NAD+) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 3 NUMBER OF REFLECTIONS : 32695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1741 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 765 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 190 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.569 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.457 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 57.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13521 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 12829 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 18293 ; 1.898 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 29526 ; 1.114 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1637 ; 8.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 603 ;37.404 ;23.499 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2380 ;22.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 96 ;20.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2018 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 15045 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 3131 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6560 ; 1.761 ; 4.241 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 6559 ; 1.761 ; 4.240 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8193 ; 3.025 ; 6.354 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 8194 ; 3.025 ; 6.355 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6961 ; 1.652 ; 4.408 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6957 ; 1.652 ; 4.408 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 10097 ; 2.876 ; 6.528 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15330 ; 5.073 ;33.262 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15328 ; 5.074 ;33.260 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6604 -15.1780 30.7158 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1199 REMARK 3 T33: 0.0728 T12: -0.0319 REMARK 3 T13: 0.0029 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.2977 L22: 0.1249 REMARK 3 L33: 0.8702 L12: 0.0135 REMARK 3 L13: 0.2703 L23: -0.1838 REMARK 3 S TENSOR REMARK 3 S11: -0.1835 S12: 0.0198 S13: 0.0281 REMARK 3 S21: -0.0290 S22: 0.0445 S23: -0.0243 REMARK 3 S31: -0.0284 S32: -0.0614 S33: 0.1390 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 65.8138 -38.1581 50.1878 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.1865 REMARK 3 T33: 0.1020 T12: -0.0875 REMARK 3 T13: 0.0399 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 0.0974 L22: 0.6049 REMARK 3 L33: 0.6537 L12: -0.0787 REMARK 3 L13: 0.1535 L23: 0.3305 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.0181 S13: 0.0516 REMARK 3 S21: -0.0031 S22: -0.0714 S23: -0.1128 REMARK 3 S31: 0.0624 S32: -0.0457 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 501 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0031 15.3187 -1.6166 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.2323 REMARK 3 T33: 0.1251 T12: -0.0910 REMARK 3 T13: -0.0513 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.2253 L22: 0.2920 REMARK 3 L33: 0.8046 L12: -0.2116 REMARK 3 L13: 0.3783 L23: -0.2395 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.1502 S13: -0.0170 REMARK 3 S21: -0.0262 S22: 0.1474 S23: -0.0849 REMARK 3 S31: 0.1411 S32: -0.2646 S33: -0.1849 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 501 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5874 36.8120 -24.8563 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.2476 REMARK 3 T33: 0.1012 T12: -0.0218 REMARK 3 T13: 0.0033 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.4884 L22: 0.3998 REMARK 3 L33: 0.4932 L12: 0.2102 REMARK 3 L13: 0.2687 L23: -0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: -0.0729 S13: -0.0143 REMARK 3 S21: -0.0929 S22: 0.0519 S23: -0.1408 REMARK 3 S31: 0.0076 S32: -0.2674 S33: 0.0420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6AJ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 100 MM HEPES/NAOH PH REMARK 280 7.0, 200MM NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.23200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 VAL A 413 REMARK 465 LYS B 412 REMARK 465 VAL B 413 REMARK 465 SER C 1 REMARK 465 ASN C 2 REMARK 465 LYS C 3 REMARK 465 ILE C 4 REMARK 465 SER C 5 REMARK 465 ALA C 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 20 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 342 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 128.24 74.21 REMARK 500 SER A 5 -175.31 52.83 REMARK 500 THR A 7 -53.08 -123.11 REMARK 500 GLU A 17 -138.42 46.09 REMARK 500 ILE A 31 -69.88 -121.42 REMARK 500 GLU A 53 61.71 79.23 REMARK 500 ASP A 54 12.07 52.35 REMARK 500 ASP A 79 -168.40 -123.94 REMARK 500 GLU A 80 -77.65 -50.81 REMARK 500 LYS A 90 124.07 175.39 REMARK 500 ASP A 137 -110.33 -95.44 REMARK 500 GLN A 138 -34.90 -32.70 REMARK 500 LYS A 173 -58.92 -132.17 REMARK 500 SER A 174 -173.97 -69.62 REMARK 500 SER A 277 -39.72 -39.68 REMARK 500 ILE A 293 107.74 -160.88 REMARK 500 ALA A 307 41.69 -82.08 REMARK 500 ASN A 347 43.18 29.54 REMARK 500 GLU A 382 -39.73 126.97 REMARK 500 GLN A 409 70.95 -119.46 REMARK 500 ASN B 2 -93.86 -142.51 REMARK 500 SER B 5 172.69 53.42 REMARK 500 GLU B 17 -137.50 57.18 REMARK 500 THR B 57 -60.32 -23.38 REMARK 500 PHE B 86 -68.46 -92.46 REMARK 500 LEU B 88 -122.45 -84.70 REMARK 500 LYS B 89 -163.67 54.85 REMARK 500 MET B 91 92.73 -66.39 REMARK 500 ASP B 137 -152.62 58.18 REMARK 500 PRO B 158 137.99 -37.83 REMARK 500 PHE B 170 149.02 -172.04 REMARK 500 SER B 174 -127.75 -118.56 REMARK 500 TYR B 234 -36.01 -134.47 REMARK 500 VAL B 311 72.44 56.69 REMARK 500 ALA B 338 -75.93 -54.61 REMARK 500 LEU B 339 -39.73 -32.38 REMARK 500 LYS B 380 -77.54 -84.26 REMARK 500 ALA B 388 32.75 -71.91 REMARK 500 GLN B 409 -70.01 -71.15 REMARK 500 GLU C 17 -123.78 50.87 REMARK 500 ILE C 31 -82.21 -129.14 REMARK 500 LEU C 44 34.19 -88.04 REMARK 500 GLU C 53 68.81 78.84 REMARK 500 ASP C 54 14.15 44.71 REMARK 500 ASN C 87 63.48 70.78 REMARK 500 HIS C 133 -84.42 -60.46 REMARK 500 ALA C 134 -25.14 98.31 REMARK 500 ASP C 137 -89.85 -74.97 REMARK 500 ASN C 160 -178.04 -63.94 REMARK 500 SER C 174 -177.38 177.45 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 3 ILE A 4 -147.36 REMARK 500 ASP A 137 GLN A 138 149.44 REMARK 500 GLY B 105 THR B 106 -145.45 REMARK 500 PHE C 135 GLY C 136 -143.80 REMARK 500 ILE D 112 ILE D 113 -145.82 REMARK 500 GLN D 319 LYS D 320 -143.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 O REMARK 620 2 ASP A 274 OD1 65.7 REMARK 620 3 ASP A 278 OD1 100.2 162.8 REMARK 620 4 ASP B 251 OD2 93.8 67.4 125.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 274 OD1 REMARK 620 2 ASP B 278 OD2 98.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 274 OD2 REMARK 620 2 ASP C 278 OD2 106.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 274 OD1 REMARK 620 2 AKG D 502 O2 81.8 REMARK 620 3 AKG D 502 O5 59.6 61.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 503 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE WAS DERIVED FROM TRYPANOSOME BRUCEI BRUCEI ILTAT 1.4. REMARK 999 HOWEVER, THE SEQUENCE REFERENCE AVAILABLE AT UNIPROT AT THE TIME OF REMARK 999 DATA PROCESSING WAS DERIVED FROM A DIFFERENT STRAIN TRYPANOSOMA REMARK 999 BRUCEI BRUCEI (STRAIN 927/4 GUTAT10.1) (TAXONOMY ID 185431). DBREF 6AJB A 1 413 UNP Q387G0 Q387G0_TRYB2 1 413 DBREF 6AJB B 1 413 UNP Q387G0 Q387G0_TRYB2 1 413 DBREF 6AJB C 1 413 UNP Q387G0 Q387G0_TRYB2 1 413 DBREF 6AJB D 1 413 UNP Q387G0 Q387G0_TRYB2 1 413 SEQADV 6AJB SER A 1 UNP Q387G0 MET 1 ENGINEERED MUTATION SEQADV 6AJB SER B 1 UNP Q387G0 MET 1 ENGINEERED MUTATION SEQADV 6AJB SER C 1 UNP Q387G0 MET 1 ENGINEERED MUTATION SEQADV 6AJB SER D 1 UNP Q387G0 MET 1 ENGINEERED MUTATION SEQRES 1 A 413 SER ASN LYS ILE SER ALA THR GLY VAL LEU VAL GLU LEU SEQRES 2 A 413 ASP GLY ASP GLU MET THR ARG VAL ILE TRP LYS LYS ILE SEQRES 3 A 413 LYS GLU THR LEU ILE PHE PRO PHE VAL ASN VAL PRO ILE SEQRES 4 A 413 GLU TYR TYR ASP LEU SER MET GLU ASN ARG ASP LYS THR SEQRES 5 A 413 GLU ASP ARG VAL THR VAL GLU ALA ALA TYR ALA ILE LYS SEQRES 6 A 413 LYS HIS GLY VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 413 ASP GLU ALA ARG VAL LYS GLU PHE ASN LEU LYS LYS MET SEQRES 8 A 413 TRP ARG SER PRO ASN GLY THR ILE ARG THR ILE LEU GLY SEQRES 9 A 413 GLY THR VAL PHE ARG GLU PRO ILE ILE CYS SER ASN VAL SEQRES 10 A 413 PRO ARG LEU VAL THR THR TRP LYS LYS PRO VAL VAL ILE SEQRES 11 A 413 GLY ARG HIS ALA PHE GLY ASP GLN TYR SER ALA THR ASP SEQRES 12 A 413 ALA VAL VAL LYS GLU PRO GLY THR PHE GLU MET ARG PHE SEQRES 13 A 413 ILE PRO ALA ASN GLY GLY GLU PRO LYS VAL TYR LYS VAL SEQRES 14 A 413 PHE ASP TYR LYS SER GLY GLY VAL MET MET GLY MET TYR SEQRES 15 A 413 ASN THR ASP ASP SER ILE ARG ASP PHE ALA ARG SER CYS SEQRES 16 A 413 PHE GLU PHE ALA LEU ALA ARG LYS TRP PRO LEU TYR LEU SEQRES 17 A 413 SER THR LYS ASN THR ILE LEU LYS HIS TYR ASP GLY ARG SEQRES 18 A 413 PHE LYS ASP ILE PHE ALA GLU MET TYR LYS ALA LEU TYR SEQRES 19 A 413 GLU THR LYS PHE LYS THR CYS GLY ILE PHE TYR GLU HIS SEQRES 20 A 413 ARG LEU ILE ASP ASP MET VAL ALA HIS CYS MET ARG SER SEQRES 21 A 413 GLU GLY GLY TYR VAL TRP ALA CYS LYS ASN TYR ASP GLY SEQRES 22 A 413 ASP VAL GLN SER ASP SER LEU ALA GLN GLY PHE GLY SER SEQRES 23 A 413 LEU GLY MET MET THR SER ILE LEU MET THR PRO ASP GLY SEQRES 24 A 413 LYS THR VAL GLU VAL GLU ALA ALA HIS GLY THR VAL THR SEQRES 25 A 413 ARG HIS TYR ARG ASP TYR GLN LYS GLY LYS GLU THR SER SEQRES 26 A 413 THR ASN PRO VAL ALA SER ILE PHE ALA TRP THR ARG ALA SEQRES 27 A 413 LEU ALA HIS ARG ALA ARG VAL ASP ASN ASN ASN THR LEU SEQRES 28 A 413 LEU GLU PHE THR GLN ARG LEU GLU ASP VAL ILE ILE ALA SEQRES 29 A 413 THR ILE GLU ALA GLY ALA MET THR GLU ASP LEU ALA ILE SEQRES 30 A 413 CYS ILE LYS GLY GLU LYS ASN VAL VAL ARG ALA ASP TYR SEQRES 31 A 413 LEU ASN THR ASP GLU PHE ILE ASP ALA VAL SER GLN ARG SEQRES 32 A 413 LEU LYS VAL ALA MET GLN LYS SER LYS VAL SEQRES 1 B 413 SER ASN LYS ILE SER ALA THR GLY VAL LEU VAL GLU LEU SEQRES 2 B 413 ASP GLY ASP GLU MET THR ARG VAL ILE TRP LYS LYS ILE SEQRES 3 B 413 LYS GLU THR LEU ILE PHE PRO PHE VAL ASN VAL PRO ILE SEQRES 4 B 413 GLU TYR TYR ASP LEU SER MET GLU ASN ARG ASP LYS THR SEQRES 5 B 413 GLU ASP ARG VAL THR VAL GLU ALA ALA TYR ALA ILE LYS SEQRES 6 B 413 LYS HIS GLY VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 413 ASP GLU ALA ARG VAL LYS GLU PHE ASN LEU LYS LYS MET SEQRES 8 B 413 TRP ARG SER PRO ASN GLY THR ILE ARG THR ILE LEU GLY SEQRES 9 B 413 GLY THR VAL PHE ARG GLU PRO ILE ILE CYS SER ASN VAL SEQRES 10 B 413 PRO ARG LEU VAL THR THR TRP LYS LYS PRO VAL VAL ILE SEQRES 11 B 413 GLY ARG HIS ALA PHE GLY ASP GLN TYR SER ALA THR ASP SEQRES 12 B 413 ALA VAL VAL LYS GLU PRO GLY THR PHE GLU MET ARG PHE SEQRES 13 B 413 ILE PRO ALA ASN GLY GLY GLU PRO LYS VAL TYR LYS VAL SEQRES 14 B 413 PHE ASP TYR LYS SER GLY GLY VAL MET MET GLY MET TYR SEQRES 15 B 413 ASN THR ASP ASP SER ILE ARG ASP PHE ALA ARG SER CYS SEQRES 16 B 413 PHE GLU PHE ALA LEU ALA ARG LYS TRP PRO LEU TYR LEU SEQRES 17 B 413 SER THR LYS ASN THR ILE LEU LYS HIS TYR ASP GLY ARG SEQRES 18 B 413 PHE LYS ASP ILE PHE ALA GLU MET TYR LYS ALA LEU TYR SEQRES 19 B 413 GLU THR LYS PHE LYS THR CYS GLY ILE PHE TYR GLU HIS SEQRES 20 B 413 ARG LEU ILE ASP ASP MET VAL ALA HIS CYS MET ARG SER SEQRES 21 B 413 GLU GLY GLY TYR VAL TRP ALA CYS LYS ASN TYR ASP GLY SEQRES 22 B 413 ASP VAL GLN SER ASP SER LEU ALA GLN GLY PHE GLY SER SEQRES 23 B 413 LEU GLY MET MET THR SER ILE LEU MET THR PRO ASP GLY SEQRES 24 B 413 LYS THR VAL GLU VAL GLU ALA ALA HIS GLY THR VAL THR SEQRES 25 B 413 ARG HIS TYR ARG ASP TYR GLN LYS GLY LYS GLU THR SER SEQRES 26 B 413 THR ASN PRO VAL ALA SER ILE PHE ALA TRP THR ARG ALA SEQRES 27 B 413 LEU ALA HIS ARG ALA ARG VAL ASP ASN ASN ASN THR LEU SEQRES 28 B 413 LEU GLU PHE THR GLN ARG LEU GLU ASP VAL ILE ILE ALA SEQRES 29 B 413 THR ILE GLU ALA GLY ALA MET THR GLU ASP LEU ALA ILE SEQRES 30 B 413 CYS ILE LYS GLY GLU LYS ASN VAL VAL ARG ALA ASP TYR SEQRES 31 B 413 LEU ASN THR ASP GLU PHE ILE ASP ALA VAL SER GLN ARG SEQRES 32 B 413 LEU LYS VAL ALA MET GLN LYS SER LYS VAL SEQRES 1 C 413 SER ASN LYS ILE SER ALA THR GLY VAL LEU VAL GLU LEU SEQRES 2 C 413 ASP GLY ASP GLU MET THR ARG VAL ILE TRP LYS LYS ILE SEQRES 3 C 413 LYS GLU THR LEU ILE PHE PRO PHE VAL ASN VAL PRO ILE SEQRES 4 C 413 GLU TYR TYR ASP LEU SER MET GLU ASN ARG ASP LYS THR SEQRES 5 C 413 GLU ASP ARG VAL THR VAL GLU ALA ALA TYR ALA ILE LYS SEQRES 6 C 413 LYS HIS GLY VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 C 413 ASP GLU ALA ARG VAL LYS GLU PHE ASN LEU LYS LYS MET SEQRES 8 C 413 TRP ARG SER PRO ASN GLY THR ILE ARG THR ILE LEU GLY SEQRES 9 C 413 GLY THR VAL PHE ARG GLU PRO ILE ILE CYS SER ASN VAL SEQRES 10 C 413 PRO ARG LEU VAL THR THR TRP LYS LYS PRO VAL VAL ILE SEQRES 11 C 413 GLY ARG HIS ALA PHE GLY ASP GLN TYR SER ALA THR ASP SEQRES 12 C 413 ALA VAL VAL LYS GLU PRO GLY THR PHE GLU MET ARG PHE SEQRES 13 C 413 ILE PRO ALA ASN GLY GLY GLU PRO LYS VAL TYR LYS VAL SEQRES 14 C 413 PHE ASP TYR LYS SER GLY GLY VAL MET MET GLY MET TYR SEQRES 15 C 413 ASN THR ASP ASP SER ILE ARG ASP PHE ALA ARG SER CYS SEQRES 16 C 413 PHE GLU PHE ALA LEU ALA ARG LYS TRP PRO LEU TYR LEU SEQRES 17 C 413 SER THR LYS ASN THR ILE LEU LYS HIS TYR ASP GLY ARG SEQRES 18 C 413 PHE LYS ASP ILE PHE ALA GLU MET TYR LYS ALA LEU TYR SEQRES 19 C 413 GLU THR LYS PHE LYS THR CYS GLY ILE PHE TYR GLU HIS SEQRES 20 C 413 ARG LEU ILE ASP ASP MET VAL ALA HIS CYS MET ARG SER SEQRES 21 C 413 GLU GLY GLY TYR VAL TRP ALA CYS LYS ASN TYR ASP GLY SEQRES 22 C 413 ASP VAL GLN SER ASP SER LEU ALA GLN GLY PHE GLY SER SEQRES 23 C 413 LEU GLY MET MET THR SER ILE LEU MET THR PRO ASP GLY SEQRES 24 C 413 LYS THR VAL GLU VAL GLU ALA ALA HIS GLY THR VAL THR SEQRES 25 C 413 ARG HIS TYR ARG ASP TYR GLN LYS GLY LYS GLU THR SER SEQRES 26 C 413 THR ASN PRO VAL ALA SER ILE PHE ALA TRP THR ARG ALA SEQRES 27 C 413 LEU ALA HIS ARG ALA ARG VAL ASP ASN ASN ASN THR LEU SEQRES 28 C 413 LEU GLU PHE THR GLN ARG LEU GLU ASP VAL ILE ILE ALA SEQRES 29 C 413 THR ILE GLU ALA GLY ALA MET THR GLU ASP LEU ALA ILE SEQRES 30 C 413 CYS ILE LYS GLY GLU LYS ASN VAL VAL ARG ALA ASP TYR SEQRES 31 C 413 LEU ASN THR ASP GLU PHE ILE ASP ALA VAL SER GLN ARG SEQRES 32 C 413 LEU LYS VAL ALA MET GLN LYS SER LYS VAL SEQRES 1 D 413 SER ASN LYS ILE SER ALA THR GLY VAL LEU VAL GLU LEU SEQRES 2 D 413 ASP GLY ASP GLU MET THR ARG VAL ILE TRP LYS LYS ILE SEQRES 3 D 413 LYS GLU THR LEU ILE PHE PRO PHE VAL ASN VAL PRO ILE SEQRES 4 D 413 GLU TYR TYR ASP LEU SER MET GLU ASN ARG ASP LYS THR SEQRES 5 D 413 GLU ASP ARG VAL THR VAL GLU ALA ALA TYR ALA ILE LYS SEQRES 6 D 413 LYS HIS GLY VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 D 413 ASP GLU ALA ARG VAL LYS GLU PHE ASN LEU LYS LYS MET SEQRES 8 D 413 TRP ARG SER PRO ASN GLY THR ILE ARG THR ILE LEU GLY SEQRES 9 D 413 GLY THR VAL PHE ARG GLU PRO ILE ILE CYS SER ASN VAL SEQRES 10 D 413 PRO ARG LEU VAL THR THR TRP LYS LYS PRO VAL VAL ILE SEQRES 11 D 413 GLY ARG HIS ALA PHE GLY ASP GLN TYR SER ALA THR ASP SEQRES 12 D 413 ALA VAL VAL LYS GLU PRO GLY THR PHE GLU MET ARG PHE SEQRES 13 D 413 ILE PRO ALA ASN GLY GLY GLU PRO LYS VAL TYR LYS VAL SEQRES 14 D 413 PHE ASP TYR LYS SER GLY GLY VAL MET MET GLY MET TYR SEQRES 15 D 413 ASN THR ASP ASP SER ILE ARG ASP PHE ALA ARG SER CYS SEQRES 16 D 413 PHE GLU PHE ALA LEU ALA ARG LYS TRP PRO LEU TYR LEU SEQRES 17 D 413 SER THR LYS ASN THR ILE LEU LYS HIS TYR ASP GLY ARG SEQRES 18 D 413 PHE LYS ASP ILE PHE ALA GLU MET TYR LYS ALA LEU TYR SEQRES 19 D 413 GLU THR LYS PHE LYS THR CYS GLY ILE PHE TYR GLU HIS SEQRES 20 D 413 ARG LEU ILE ASP ASP MET VAL ALA HIS CYS MET ARG SER SEQRES 21 D 413 GLU GLY GLY TYR VAL TRP ALA CYS LYS ASN TYR ASP GLY SEQRES 22 D 413 ASP VAL GLN SER ASP SER LEU ALA GLN GLY PHE GLY SER SEQRES 23 D 413 LEU GLY MET MET THR SER ILE LEU MET THR PRO ASP GLY SEQRES 24 D 413 LYS THR VAL GLU VAL GLU ALA ALA HIS GLY THR VAL THR SEQRES 25 D 413 ARG HIS TYR ARG ASP TYR GLN LYS GLY LYS GLU THR SER SEQRES 26 D 413 THR ASN PRO VAL ALA SER ILE PHE ALA TRP THR ARG ALA SEQRES 27 D 413 LEU ALA HIS ARG ALA ARG VAL ASP ASN ASN ASN THR LEU SEQRES 28 D 413 LEU GLU PHE THR GLN ARG LEU GLU ASP VAL ILE ILE ALA SEQRES 29 D 413 THR ILE GLU ALA GLY ALA MET THR GLU ASP LEU ALA ILE SEQRES 30 D 413 CYS ILE LYS GLY GLU LYS ASN VAL VAL ARG ALA ASP TYR SEQRES 31 D 413 LEU ASN THR ASP GLU PHE ILE ASP ALA VAL SER GLN ARG SEQRES 32 D 413 LEU LYS VAL ALA MET GLN LYS SER LYS VAL HET NAD A 501 44 HET CA A 502 1 HET NAD B 501 44 HET CA B 502 1 HET NAD C 501 44 HET CA C 502 1 HET NAD D 501 44 HET AKG D 502 10 HET CA D 503 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CA CALCIUM ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 6 CA 4(CA 2+) FORMUL 12 AKG C5 H6 O5 HELIX 1 AA1 ASP A 16 LEU A 30 1 15 HELIX 2 AA2 SER A 45 GLU A 53 1 9 HELIX 3 AA3 ASP A 54 GLY A 68 1 15 HELIX 4 AA4 ASP A 79 ASN A 87 1 9 HELIX 5 AA5 SER A 94 GLY A 104 1 11 HELIX 6 AA6 ASP A 137 ALA A 141 5 5 HELIX 7 AA7 ASP A 185 LYS A 203 1 19 HELIX 8 AA8 HIS A 217 TYR A 234 1 18 HELIX 9 AA9 TYR A 234 GLY A 242 1 9 HELIX 10 AB1 ILE A 250 SER A 260 1 11 HELIX 11 AB2 LYS A 269 GLY A 285 1 17 HELIX 12 AB3 SER A 286 GLY A 288 5 3 HELIX 13 AB4 VAL A 311 GLY A 321 1 11 HELIX 14 AB5 PRO A 328 ASP A 346 1 19 HELIX 15 AB6 ASN A 348 GLY A 369 1 22 HELIX 16 AB7 THR A 372 LYS A 380 1 9 HELIX 17 AB8 VAL A 386 TYR A 390 5 5 HELIX 18 AB9 ASN A 392 ALA A 407 1 16 HELIX 19 AC1 ASP B 16 ILE B 31 1 16 HELIX 20 AC2 SER B 45 THR B 52 1 8 HELIX 21 AC3 ARG B 55 GLY B 68 1 14 HELIX 22 AC4 ASP B 79 PHE B 86 1 8 HELIX 23 AC5 SER B 94 LEU B 103 1 10 HELIX 24 AC6 GLY B 136 TYR B 139 5 4 HELIX 25 AC7 ASP B 185 LYS B 203 1 19 HELIX 26 AC8 HIS B 217 TYR B 234 1 18 HELIX 27 AC9 TYR B 234 GLY B 242 1 9 HELIX 28 AD1 ILE B 250 SER B 260 1 11 HELIX 29 AD2 LYS B 269 GLY B 285 1 17 HELIX 30 AD3 VAL B 311 GLY B 321 1 11 HELIX 31 AD4 PRO B 328 ASP B 346 1 19 HELIX 32 AD5 ASN B 348 ALA B 368 1 21 HELIX 33 AD6 THR B 372 LYS B 380 1 9 HELIX 34 AD7 GLY B 381 VAL B 385 5 5 HELIX 35 AD8 VAL B 386 TYR B 390 5 5 HELIX 36 AD9 ASN B 392 LYS B 410 1 19 HELIX 37 AE1 ASP C 16 ILE C 31 1 16 HELIX 38 AE2 SER C 45 GLU C 53 1 9 HELIX 39 AE3 ASP C 54 GLY C 68 1 15 HELIX 40 AE4 ASP C 79 ASN C 87 1 9 HELIX 41 AE5 SER C 94 GLY C 104 1 11 HELIX 42 AE6 ASP C 185 LYS C 203 1 19 HELIX 43 AE7 HIS C 217 TYR C 234 1 18 HELIX 44 AE8 GLU C 235 CYS C 241 1 7 HELIX 45 AE9 ILE C 250 SER C 260 1 11 HELIX 46 AF1 LYS C 269 GLY C 285 1 17 HELIX 47 AF2 SER C 286 GLY C 288 5 3 HELIX 48 AF3 VAL C 311 GLY C 321 1 11 HELIX 49 AF4 PRO C 328 ASN C 347 1 20 HELIX 50 AF5 ASN C 348 ALA C 368 1 21 HELIX 51 AF6 THR C 372 GLY C 381 1 10 HELIX 52 AF7 VAL C 386 TYR C 390 5 5 HELIX 53 AF8 ASN C 392 LYS C 410 1 19 HELIX 54 AF9 GLU D 17 LEU D 30 1 14 HELIX 55 AG1 SER D 45 THR D 52 1 8 HELIX 56 AG2 ARG D 55 GLY D 68 1 14 HELIX 57 AG3 ASP D 79 PHE D 86 1 8 HELIX 58 AG4 SER D 94 GLY D 104 1 11 HELIX 59 AG5 GLY D 136 TYR D 139 5 4 HELIX 60 AG6 ASP D 185 ARG D 202 1 18 HELIX 61 AG7 ASP D 219 TYR D 234 1 16 HELIX 62 AG8 TYR D 234 CYS D 241 1 8 HELIX 63 AG9 ILE D 250 SER D 260 1 11 HELIX 64 AH1 LYS D 269 PHE D 284 1 16 HELIX 65 AH2 VAL D 311 GLN D 319 1 9 HELIX 66 AH3 PRO D 328 ASP D 346 1 19 HELIX 67 AH4 ASN D 348 ALA D 368 1 21 HELIX 68 AH5 THR D 372 LYS D 380 1 9 HELIX 69 AH6 VAL D 386 TYR D 390 5 5 HELIX 70 AH7 ASN D 392 LYS D 410 1 19 SHEET 1 AA110 ILE A 39 ASP A 43 0 SHEET 2 AA110 LEU A 10 ASP A 14 1 N GLU A 12 O GLU A 40 SHEET 3 AA110 VAL A 69 LYS A 72 1 O VAL A 71 N VAL A 11 SHEET 4 AA110 VAL A 302 ALA A 306 1 O VAL A 304 N GLY A 70 SHEET 5 AA110 MET A 290 MET A 295 -1 N SER A 292 O GLU A 305 SHEET 6 AA110 THR A 106 PRO A 111 -1 N GLU A 110 O THR A 291 SHEET 7 AA110 VAL A 128 ARG A 132 -1 O ILE A 130 N ARG A 109 SHEET 8 AA110 TYR A 264 CYS A 268 1 O CYS A 268 N GLY A 131 SHEET 9 AA110 LEU A 206 THR A 210 1 N TYR A 207 O ALA A 267 SHEET 10 AA110 TYR A 245 LEU A 249 1 O ARG A 248 N LEU A 208 SHEET 1 AA2 4 THR A 142 VAL A 146 0 SHEET 2 AA2 4 GLY A 176 THR A 184 -1 O GLY A 180 N THR A 142 SHEET 3 AA2 4 GLY B 176 THR B 184 -1 O MET B 179 N MET A 181 SHEET 4 AA2 4 ALA B 141 VAL B 146 -1 N VAL B 146 O GLY B 176 SHEET 1 AA3 4 LYS A 165 PHE A 170 0 SHEET 2 AA3 4 PHE A 152 PRO A 158 -1 N PHE A 152 O VAL A 169 SHEET 3 AA3 4 GLY B 150 PHE B 156 -1 O ARG B 155 N GLU A 153 SHEET 4 AA3 4 LYS B 165 TYR B 172 -1 O LYS B 165 N PHE B 156 SHEET 1 AA410 ILE B 39 TYR B 41 0 SHEET 2 AA410 LEU B 10 LEU B 13 1 N GLU B 12 O GLU B 40 SHEET 3 AA410 VAL B 69 LYS B 72 1 O VAL B 71 N LEU B 13 SHEET 4 AA410 VAL B 302 GLU B 305 1 O VAL B 304 N GLY B 70 SHEET 5 AA410 MET B 290 MET B 295 -1 N LEU B 294 O GLU B 303 SHEET 6 AA410 THR B 106 PRO B 111 -1 N PHE B 108 O ILE B 293 SHEET 7 AA410 VAL B 128 ARG B 132 -1 O ILE B 130 N ARG B 109 SHEET 8 AA410 TYR B 264 CYS B 268 1 O TRP B 266 N VAL B 129 SHEET 9 AA410 LEU B 206 THR B 210 1 N TYR B 207 O ALA B 267 SHEET 10 AA410 TYR B 245 LEU B 249 1 O ARG B 248 N LEU B 208 SHEET 1 AA510 ILE C 39 ASP C 43 0 SHEET 2 AA510 LEU C 10 ASP C 14 1 N LEU C 10 O GLU C 40 SHEET 3 AA510 VAL C 71 LYS C 72 1 O VAL C 71 N LEU C 13 SHEET 4 AA510 VAL C 302 ALA C 306 1 O VAL C 304 N LYS C 72 SHEET 5 AA510 MET C 290 MET C 295 -1 N SER C 292 O GLU C 305 SHEET 6 AA510 THR C 106 PRO C 111 -1 N GLU C 110 O THR C 291 SHEET 7 AA510 VAL C 128 ARG C 132 -1 O ILE C 130 N ARG C 109 SHEET 8 AA510 TYR C 264 CYS C 268 1 O TYR C 264 N VAL C 129 SHEET 9 AA510 LEU C 206 THR C 210 1 N TYR C 207 O ALA C 267 SHEET 10 AA510 TYR C 245 LEU C 249 1 O ARG C 248 N LEU C 208 SHEET 1 AA6 4 ALA C 141 VAL C 146 0 SHEET 2 AA6 4 GLY C 176 THR C 184 -1 O MET C 178 N ALA C 144 SHEET 3 AA6 4 GLY D 176 THR D 184 -1 O MET D 179 N MET C 181 SHEET 4 AA6 4 ALA D 141 VAL D 146 -1 N ALA D 144 O MET D 178 SHEET 1 AA7 4 LYS C 165 TYR C 172 0 SHEET 2 AA7 4 GLY C 150 PHE C 156 -1 N PHE C 152 O VAL C 169 SHEET 3 AA7 4 PHE D 152 PRO D 158 -1 O ARG D 155 N GLU C 153 SHEET 4 AA7 4 LYS D 165 PHE D 170 -1 O VAL D 169 N PHE D 152 SHEET 1 AA810 ILE D 39 TYR D 42 0 SHEET 2 AA810 LEU D 10 LEU D 13 1 N GLU D 12 O TYR D 42 SHEET 3 AA810 VAL D 69 LYS D 72 1 O VAL D 71 N LEU D 13 SHEET 4 AA810 VAL D 302 GLU D 305 1 O VAL D 304 N LYS D 72 SHEET 5 AA810 LEU D 294 MET D 295 -1 N LEU D 294 O GLU D 303 SHEET 6 AA810 THR D 106 PRO D 111 -1 N THR D 106 O MET D 295 SHEET 7 AA810 VAL D 129 ARG D 132 -1 O ILE D 130 N ARG D 109 SHEET 8 AA810 VAL D 265 CYS D 268 1 O TRP D 266 N VAL D 129 SHEET 9 AA810 LEU D 206 THR D 210 1 N TYR D 207 O VAL D 265 SHEET 10 AA810 TYR D 245 LEU D 249 1 O ARG D 248 N LEU D 208 SHEET 1 AA9 7 ILE D 39 TYR D 42 0 SHEET 2 AA9 7 LEU D 10 LEU D 13 1 N GLU D 12 O TYR D 42 SHEET 3 AA9 7 VAL D 69 LYS D 72 1 O VAL D 71 N LEU D 13 SHEET 4 AA9 7 VAL D 302 GLU D 305 1 O VAL D 304 N LYS D 72 SHEET 5 AA9 7 LEU D 294 MET D 295 -1 N LEU D 294 O GLU D 303 SHEET 6 AA9 7 THR D 106 PRO D 111 -1 N THR D 106 O MET D 295 SHEET 7 AA9 7 MET D 290 THR D 291 -1 O THR D 291 N GLU D 110 LINK O ASP A 274 CA CA A 502 1555 1555 3.02 LINK OD1 ASP A 274 CA CA A 502 1555 1555 2.34 LINK OD1 ASP A 278 CA CA A 502 1555 1555 3.08 LINK CA CA A 502 OD2 ASP B 251 1555 1555 3.02 LINK OD1 ASP B 274 CA CA B 502 1555 1555 2.41 LINK OD2 ASP B 278 CA CA B 502 1555 1555 2.70 LINK OD2 ASP C 274 CA CA C 502 1555 1555 2.52 LINK OD2 ASP C 278 CA CA C 502 1555 1555 2.39 LINK OD1 ASP D 274 CA CA D 503 1555 1555 2.31 LINK O2 AKG D 502 CA CA D 503 1555 1555 2.55 LINK O5 AKG D 502 CA CA D 503 1555 1555 2.76 SITE 1 AC1 13 LYS A 72 THR A 75 ILE A 76 THR A 77 SITE 2 AC1 13 ARG A 82 ASN A 96 GLU A 305 HIS A 308 SITE 3 AC1 13 GLY A 309 THR A 310 VAL A 311 ARG A 313 SITE 4 AC1 13 ASN A 327 SITE 1 AC2 3 ASP A 274 ASP A 278 ASP B 251 SITE 1 AC3 14 THR B 75 ILE B 76 THR B 77 ARG B 82 SITE 2 AC3 14 ASN B 96 GLY B 288 HIS B 308 GLY B 309 SITE 3 AC3 14 THR B 310 VAL B 311 THR B 312 ARG B 313 SITE 4 AC3 14 THR B 326 ASN B 327 SITE 1 AC4 2 ASP B 274 ASP B 278 SITE 1 AC5 15 ALA C 74 THR C 75 ILE C 76 THR C 77 SITE 2 AC5 15 ARG C 82 ASN C 96 GLY C 288 GLU C 305 SITE 3 AC5 15 HIS C 308 GLY C 309 THR C 310 VAL C 311 SITE 4 AC5 15 THR C 312 ARG C 313 ASN C 327 SITE 1 AC6 2 ASP C 274 ASP C 278 SITE 1 AC7 21 THR C 213 ASP C 251 ARG C 259 LYS D 72 SITE 2 AC7 21 ALA D 74 THR D 75 ILE D 76 THR D 77 SITE 3 AC7 21 ARG D 82 ASN D 96 LEU D 287 GLY D 288 SITE 4 AC7 21 HIS D 308 GLY D 309 THR D 310 VAL D 311 SITE 5 AC7 21 THR D 312 ARG D 313 THR D 326 ASN D 327 SITE 6 AC7 21 AKG D 502 SITE 1 AC8 12 LYS C 211 ILE C 214 ASP C 251 THR D 77 SITE 2 AC8 12 SER D 94 ARG D 100 ARG D 109 ARG D 132 SITE 3 AC8 12 ASP D 274 ALA D 307 NAD D 501 CA D 503 SITE 1 AC9 4 ASP D 274 ASP D 278 ALA D 307 AKG D 502 CRYST1 120.520 70.464 121.929 90.00 113.42 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008297 0.000000 0.003594 0.00000 SCALE2 0.000000 0.014192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008938 0.00000