HEADER OXIDOREDUCTASE 08-AUG-17 6ALI TITLE SOLUTION NMR STRUCTURE OF A PUTATIVE THIOREDOXIN (ECH_0218) IN THE TITLE 2 OXIDIZED STATE FROM EHRLICHIA CHAFFEENSIS, THE ETIOLOGICAL AGENT TITLE 3 RESPONSIBLE FOR HUMAN MONOCYTIC EHRLICHIOSIS. SEATTLE STRUCTURAL TITLE 4 GENOMICS CENTER FOR INFECTIOUS DISEASE TARGET EHCHA.00546.A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EHRLICHIA CHAFFEENSIS (STRAIN ATCC CRL-10679 / SOURCE 3 ARKANSAS); SOURCE 4 ORGANISM_TAXID: 205920; SOURCE 5 STRAIN: ATCC CRL-10679 / ARKANSAS; SOURCE 6 GENE: TRX, ECH_0218; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, INFECTIOUS DISEASES, THIOREDOXIN, HUMAN MONOCYTIC KEYWDS 2 EHRLICHIOSIS, TICK DISEASES, OXIDOREDUCTASE, STRUCTURAL GENOMICS, KEYWDS 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 5 14-JUN-23 6ALI 1 REMARK REVDAT 4 11-DEC-19 6ALI 1 REMARK REVDAT 3 13-FEB-19 6ALI 1 JRNL REVDAT 2 10-JAN-18 6ALI 1 JRNL REVDAT 1 06-SEP-17 6ALI 0 SPRSDE 06-SEP-17 6ALI 2MOD JRNL AUTH G.W.BUCHKO,S.N.HEWITT,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL SOLUTION NMR STRUCTURES OF OXIDIZED AND REDUCED EHRLICHIA JRNL TITL 2 CHAFFEENSIS THIOREDOXIN: NMR-INVISIBLE STRUCTURE OWING TO JRNL TITL 3 BACKBONE DYNAMICS. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 46 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29372907 JRNL DOI 10.1107/S2053230X1701799X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CYANA 2.1 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROLINE 97 WAS FIXED IN THE CIS REMARK 3 -POSITION BASED ON ALL OTHER THIOREDOXIN STRUCTURES. STRUCTURE REMARK 3 DETERMINATION WAS PERFORMED ITERATIVELY USING CYANA (AUTOMATED REMARK 3 NOESY ASSIGNMENTS). A TOTAL OF 20 STRUCTURES OUT OF 100 WITH REMARK 3 LOWEST TARGET FUNCTION FROM THE FINAL CYANA CALCULATION WERE REMARK 3 TAKEN AND REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS) AFTER ADDING 5% TO THE REMARK 3 UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS AND THE VDW REMARK 3 LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS USED FOR THE WATER REMARK 3 REFINEMENT CALCULATIONS. REMARK 4 REMARK 4 6ALI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229440. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.1 MM SODIUM CHLORIDE, 0.02 MM REMARK 210 TRIS, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 C(CO)NH; 3D 1H-15N NOESY; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-15N HSQC REMARK 210 DEUTERIUM EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : VXRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007, SPARKY 3.115, PSVS REMARK 210 1.5, TALOS + REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 5 116.96 -169.31 REMARK 500 1 HIS A 7 -78.12 -85.50 REMARK 500 1 HIS A 8 -158.80 -115.56 REMARK 500 1 ALA A 14 29.70 -160.62 REMARK 500 1 GLN A 15 18.72 57.81 REMARK 500 1 GLN A 17 -80.45 -146.28 REMARK 500 1 ILE A 23 96.32 -63.58 REMARK 500 1 ASN A 39 -88.78 -72.15 REMARK 500 1 ASN A 41 16.43 58.22 REMARK 500 1 TRP A 49 92.75 -68.18 REMARK 500 1 CYS A 53 90.73 54.99 REMARK 500 1 PRO A 55 6.29 -69.93 REMARK 500 1 ILE A 81 34.46 -154.21 REMARK 500 2 HIS A 5 88.97 -170.75 REMARK 500 2 GLU A 13 76.55 50.82 REMARK 500 2 ASN A 41 3.81 51.04 REMARK 500 2 ASN A 84 78.86 -105.47 REMARK 500 2 SER A 109 -178.91 -69.87 REMARK 500 3 HIS A 3 109.55 -164.72 REMARK 500 3 HIS A 5 94.07 -167.68 REMARK 500 3 HIS A 6 85.17 -65.85 REMARK 500 3 GLU A 13 86.09 60.08 REMARK 500 3 ALA A 14 92.83 -161.52 REMARK 500 3 ASN A 39 -87.19 -58.08 REMARK 500 3 ASN A 41 11.41 55.92 REMARK 500 3 TRP A 49 108.87 -54.57 REMARK 500 3 ILE A 81 64.95 -112.68 REMARK 500 3 ASN A 84 76.67 -105.53 REMARK 500 3 SER A 109 -177.99 -69.86 REMARK 500 4 HIS A 5 -52.20 73.25 REMARK 500 4 ASN A 39 -82.71 -73.66 REMARK 500 4 ALA A 50 134.61 69.92 REMARK 500 4 CYS A 53 -82.56 -146.64 REMARK 500 4 PRO A 55 -9.83 -58.13 REMARK 500 4 ILE A 81 32.44 -94.55 REMARK 500 4 SER A 94 -71.30 -129.82 REMARK 500 4 SER A 109 -178.62 -69.81 REMARK 500 5 ALA A 2 78.55 -154.53 REMARK 500 5 HIS A 4 90.78 67.48 REMARK 500 5 ALA A 14 -66.53 -106.68 REMARK 500 5 GLN A 15 78.47 46.66 REMARK 500 5 ASN A 39 -79.19 -54.56 REMARK 500 5 ASN A 41 15.33 59.21 REMARK 500 5 ILE A 81 74.30 -100.81 REMARK 500 6 GLU A 13 90.86 -179.26 REMARK 500 6 GLN A 15 95.92 -65.15 REMARK 500 6 PRO A 19 85.12 -65.80 REMARK 500 6 ASN A 41 15.61 58.40 REMARK 500 6 CYS A 53 135.88 -175.86 REMARK 500 7 ALA A 2 -170.21 53.17 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19938 RELATED DB: BMRB DBREF 6ALI A 22 128 UNP Q2GHP2 Q2GHP2_EHRCR 1 107 SEQADV 6ALI MET A 1 UNP Q2GHP2 INITIATING METHIONINE SEQADV 6ALI ALA A 2 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI HIS A 3 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI HIS A 4 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI HIS A 5 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI HIS A 6 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI HIS A 7 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI HIS A 8 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI MET A 9 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI GLY A 10 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI THR A 11 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI LEU A 12 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI GLU A 13 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI ALA A 14 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI GLN A 15 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI THR A 16 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI GLN A 17 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI GLY A 18 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI PRO A 19 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI GLY A 20 UNP Q2GHP2 EXPRESSION TAG SEQADV 6ALI SER A 21 UNP Q2GHP2 EXPRESSION TAG SEQRES 1 A 128 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 128 ALA GLN THR GLN GLY PRO GLY SER MET ILE GLU GLN ILE SEQRES 3 A 128 GLY ASP SER GLU PHE ASP ASN LYS VAL THR SER CYS ASN SEQRES 4 A 128 ASP ASN ILE LEU ILE LEU VAL ASP PHE TRP ALA PRO TRP SEQRES 5 A 128 CYS GLY PRO CYS ARG SER LEU GLU PRO GLN LEU GLU LYS SEQRES 6 A 128 LEU ALA GLN GLN TYR THR GLU ASN VAL LYS ILE TYR LYS SEQRES 7 A 128 ILE ASN ILE GLU ASP ASN GLN ASP VAL ALA THR GLN TYR SEQRES 8 A 128 GLY VAL SER ALA ILE PRO THR ILE LEU MET PHE LYS ASN SEQRES 9 A 128 GLY LYS LYS LEU SER GLN VAL ILE GLY ALA ASP ILE SER SEQRES 10 A 128 LYS ILE ILE SER GLU ILE ASN ASN ASN ILE ASN HELIX 1 AA1 SER A 29 SER A 37 1 9 HELIX 2 AA2 PRO A 55 THR A 71 1 17 HELIX 3 AA3 GLN A 85 GLY A 92 1 8 HELIX 4 AA4 ASP A 115 ASN A 128 1 14 SHEET 1 AA1 5 GLU A 24 GLY A 27 0 SHEET 2 AA1 5 VAL A 74 ASN A 80 1 O ASN A 80 N ILE A 26 SHEET 3 AA1 5 LEU A 43 ASP A 47 1 N ASP A 47 O TYR A 77 SHEET 4 AA1 5 THR A 98 LYS A 103 -1 O LEU A 100 N VAL A 46 SHEET 5 AA1 5 LYS A 106 ILE A 112 -1 O VAL A 111 N ILE A 99 SSBOND 1 CYS A 53 CYS A 56 1555 1555 2.03 CISPEP 1 ILE A 96 PRO A 97 1 -0.66 CISPEP 2 ILE A 96 PRO A 97 2 -4.77 CISPEP 3 ILE A 96 PRO A 97 3 -3.28 CISPEP 4 ILE A 96 PRO A 97 4 -0.92 CISPEP 5 ILE A 96 PRO A 97 5 -0.75 CISPEP 6 ILE A 96 PRO A 97 6 -1.00 CISPEP 7 ILE A 96 PRO A 97 7 -0.19 CISPEP 8 ILE A 96 PRO A 97 8 -0.04 CISPEP 9 ILE A 96 PRO A 97 9 -3.04 CISPEP 10 ILE A 96 PRO A 97 10 -3.73 CISPEP 11 ILE A 96 PRO A 97 11 1.90 CISPEP 12 ILE A 96 PRO A 97 12 -1.39 CISPEP 13 ILE A 96 PRO A 97 13 -0.65 CISPEP 14 ILE A 96 PRO A 97 14 3.17 CISPEP 15 ILE A 96 PRO A 97 15 -0.30 CISPEP 16 ILE A 96 PRO A 97 16 -3.82 CISPEP 17 ILE A 96 PRO A 97 17 -6.88 CISPEP 18 ILE A 96 PRO A 97 18 -3.11 CISPEP 19 ILE A 96 PRO A 97 19 -0.72 CISPEP 20 ILE A 96 PRO A 97 20 -5.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1