HEADER TRANSFERASE 11-AUG-17 6AMZ TITLE CRYSTAL STRUCTURE OF A DOMAIN SWAPPED 2,3,4,5-TETRAHYDROPYRIDINE-2,6- TITLE 2 DICARBOXYLATE N-SUCCINYLTRANSFERASE FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- COMPND 3 SUCCINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE, COMPND 6 TETRAHYDROPICOLINATE SUCCINYLASE; COMPND 7 EC: 2.3.1.117; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: DAPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, STRUCTURAL GENOMICS, DAPD, HOSPITAL-DERIVED BACTERIAL KEYWDS 2 INFECTION, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 3 DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.E.EDWARDS,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 2 04-OCT-23 6AMZ 1 REMARK REVDAT 1 23-AUG-17 6AMZ 0 JRNL AUTH T.E.EDWARDS,P.S.HORANYI,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A DOMAIN SWAPPED JRNL TITL 2 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE JRNL TITL 3 N-SUCCINYLTRANSFERASE FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3377 - 4.8173 0.99 1709 156 0.1598 0.1771 REMARK 3 2 4.8173 - 3.8248 1.00 1633 150 0.1281 0.1378 REMARK 3 3 3.8248 - 3.3416 1.00 1629 135 0.1403 0.1514 REMARK 3 4 3.3416 - 3.0362 1.00 1646 120 0.1534 0.1945 REMARK 3 5 3.0362 - 2.8187 1.00 1577 164 0.1545 0.1986 REMARK 3 6 2.8187 - 2.6525 1.00 1614 143 0.1772 0.2056 REMARK 3 7 2.6525 - 2.5197 1.00 1625 125 0.1772 0.2341 REMARK 3 8 2.5197 - 2.4101 1.00 1592 140 0.1795 0.2471 REMARK 3 9 2.4101 - 2.3173 1.00 1590 138 0.1598 0.1846 REMARK 3 10 2.3173 - 2.2373 1.00 1590 161 0.1725 0.2060 REMARK 3 11 2.2373 - 2.1674 1.00 1619 119 0.1725 0.2201 REMARK 3 12 2.1674 - 2.1054 1.00 1586 127 0.1846 0.2328 REMARK 3 13 2.1054 - 2.0500 1.00 1552 149 0.2062 0.2943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2015 REMARK 3 ANGLE : 0.775 2751 REMARK 3 CHIRALITY : 0.063 316 REMARK 3 PLANARITY : 0.005 359 REMARK 3 DIHEDRAL : 13.038 1209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5285 16.9977 11.9576 REMARK 3 T TENSOR REMARK 3 T11: 0.4486 T22: 0.6974 REMARK 3 T33: 0.5661 T12: -0.1759 REMARK 3 T13: 0.0124 T23: 0.2389 REMARK 3 L TENSOR REMARK 3 L11: 5.0276 L22: 4.3385 REMARK 3 L33: 4.3416 L12: 0.8311 REMARK 3 L13: -1.1960 L23: 1.4255 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.6301 S13: 0.6750 REMARK 3 S21: -0.4145 S22: -0.0724 S23: -0.6047 REMARK 3 S31: -0.7443 S32: 0.8130 S33: 0.1144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5306 -3.4309 16.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.2568 REMARK 3 T33: 0.2333 T12: 0.0101 REMARK 3 T13: 0.0155 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.5146 L22: 1.3219 REMARK 3 L33: 1.0677 L12: 0.2381 REMARK 3 L13: 0.2939 L23: -0.1105 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.2389 S13: -0.1413 REMARK 3 S21: -0.1985 S22: 0.0292 S23: -0.0362 REMARK 3 S31: 0.0430 S32: 0.0675 S33: 0.0217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8189 -11.1330 40.4850 REMARK 3 T TENSOR REMARK 3 T11: 0.3056 T22: 0.2659 REMARK 3 T33: 0.2374 T12: -0.0191 REMARK 3 T13: 0.0437 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 2.7901 L22: 2.5667 REMARK 3 L33: 4.2728 L12: 0.6528 REMARK 3 L13: 1.2834 L23: 1.4232 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.4503 S13: -0.2680 REMARK 3 S21: 0.4215 S22: -0.0777 S23: 0.1002 REMARK 3 S31: 0.3512 S32: -0.3085 S33: 0.0357 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 38.331 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.612 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.74 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACBAC.00002.A.B1.PS02398 AT 23.06 REMARK 280 MG/ML AGAINST JCSG A4 OPTIMIZATION SCREEN CONTAINING 20 MM CACL2, REMARK 280 38% MPD, 0.1 M SODIUM ACETATE PH 4.3, CRYSTAL TRACKING ID REMARK 280 291434C11, UNIQUE PUCK ID STC4-1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.12500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.63028 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 72.81333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.12500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.63028 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 72.81333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.12500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.63028 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.81333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.12500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.63028 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 72.81333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.12500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.63028 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.81333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.12500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.63028 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.81333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.26056 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 145.62667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.26056 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 145.62667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.26056 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 145.62667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.26056 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 145.62667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.26056 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 145.62667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.26056 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 145.62667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 449 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 540 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 257 REMARK 465 ALA A 258 REMARK 465 GLN A 259 REMARK 465 THR A 260 REMARK 465 ARG A 261 REMARK 465 ALA A 262 REMARK 465 LYS A 263 REMARK 465 THR A 264 REMARK 465 SER A 265 REMARK 465 LEU A 266 REMARK 465 ASN A 267 REMARK 465 ASP A 268 REMARK 465 LEU A 269 REMARK 465 LEU A 270 REMARK 465 ARG A 271 REMARK 465 ALA A 272 REMARK 465 ASP A 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 189 O HOH A 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 83 109.69 -164.46 REMARK 500 PRO A 108 44.85 -101.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 410 O REMARK 620 2 HOH A 410 O 180.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6AMY RELATED DB: PDB REMARK 900 NON-DOMAIN SWAPPED LOW RESOLUTION STRUCTURE REMARK 900 RELATED ID: ACBAC.00002.A RELATED DB: TARGETTRACK DBREF 6AMZ A 1 273 UNP Q5DL43 DAPD_ACIBA 1 273 SEQADV 6AMZ MET A -7 UNP Q5DL43 INITIATING METHIONINE SEQADV 6AMZ ALA A -6 UNP Q5DL43 EXPRESSION TAG SEQADV 6AMZ HIS A -5 UNP Q5DL43 EXPRESSION TAG SEQADV 6AMZ HIS A -4 UNP Q5DL43 EXPRESSION TAG SEQADV 6AMZ HIS A -3 UNP Q5DL43 EXPRESSION TAG SEQADV 6AMZ HIS A -2 UNP Q5DL43 EXPRESSION TAG SEQADV 6AMZ HIS A -1 UNP Q5DL43 EXPRESSION TAG SEQADV 6AMZ HIS A 0 UNP Q5DL43 EXPRESSION TAG SEQRES 1 A 281 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN LEU SER SEQRES 2 A 281 THR ILE ILE GLU GLN ALA PHE GLU ASP ARG ALA ASN PHE SEQRES 3 A 281 THR ALA ALA ASP CYS PRO SER GLU ILE ARG GLN ALA VAL SEQRES 4 A 281 GLU GLU ALA ILE ALA GLY LEU ASP ASN GLY THR LEU ARG SEQRES 5 A 281 VAL ALA GLU LYS ILE ASN GLY GLU TRP VAL VAL HIS GLN SEQRES 6 A 281 TRP LEU LYS LYS ALA VAL LEU LEU SER PHE LYS LEU ASN SEQRES 7 A 281 ASP ASN LYS PRO ILE GLU SER CYS ASP LEU ARG PHE TYR SEQRES 8 A 281 ASP LYS VAL GLU THR LYS PHE SER GLY TRP THR GLU GLU SEQRES 9 A 281 GLN PHE LYS ALA ALA GLY VAL ARG VAL VAL PRO PRO ALA SEQRES 10 A 281 VAL ALA ARG ARG GLY SER PHE GLN ALA LYS ASN VAL VAL SEQRES 11 A 281 LEU MET PRO SER TYR VAL ASN ILE GLY ALA TYR VAL ASP SEQRES 12 A 281 GLU GLY THR MET VAL ASP THR TRP ALA THR VAL GLY SER SEQRES 13 A 281 CYS ALA GLN ILE GLY LYS ASN VAL HIS LEU SER GLY GLY SEQRES 14 A 281 VAL GLY ILE GLY GLY VAL LEU GLU PRO LEU GLN ALA ASN SEQRES 15 A 281 PRO THR ILE ILE GLU ASP ASN CYS PHE ILE GLY ALA ARG SEQRES 16 A 281 SER GLU ILE VAL GLU GLY VAL ILE VAL GLU GLU GLY SER SEQRES 17 A 281 VAL ILE SER MET GLY VAL TYR ILE GLY GLN SER THR ARG SEQRES 18 A 281 ILE TYR ASP ARG GLU THR GLY GLU ILE HIS TYR GLY ARG SEQRES 19 A 281 VAL PRO ALA GLY SER VAL VAL VAL PRO GLY ASN LEU PRO SEQRES 20 A 281 SER ALA ASP GLY LYS TYR SER LEU TYR ALA ALA ILE ILE SEQRES 21 A 281 VAL LYS LYS VAL ASP ALA GLN THR ARG ALA LYS THR SER SEQRES 22 A 281 LEU ASN ASP LEU LEU ARG ALA ASP HET MRD A 301 8 HET CA A 302 1 HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM CA CALCIUM ION FORMUL 2 MRD C6 H14 O2 FORMUL 3 CA CA 2+ FORMUL 4 HOH *148(H2 O) HELIX 1 AA1 GLN A 3 ASP A 14 1 12 HELIX 2 AA2 ARG A 15 PHE A 18 5 4 HELIX 3 AA3 PRO A 24 ASN A 40 1 17 HELIX 4 AA4 HIS A 56 LEU A 69 1 14 HELIX 5 AA5 GLU A 76 LEU A 80 5 5 HELIX 6 AA6 THR A 94 GLY A 102 1 9 SHEET 1 AA1 2 ALA A 46 ILE A 49 0 SHEET 2 AA1 2 GLU A 52 VAL A 55 -1 O GLU A 52 N ILE A 49 SHEET 1 AA210 ARG A 104 VAL A 105 0 SHEET 2 AA210 VAL A 122 LEU A 123 1 O LEU A 123 N ARG A 104 SHEET 3 AA210 MET A 139 VAL A 140 1 O VAL A 140 N VAL A 122 SHEET 4 AA210 HIS A 157 LEU A 158 1 O LEU A 158 N MET A 139 SHEET 5 AA210 PHE A 183 ILE A 184 1 O ILE A 184 N HIS A 157 SHEET 6 AA210 VAL A 201 ILE A 202 1 O ILE A 202 N PHE A 183 SHEET 7 AA210 SER A 231 PRO A 239 1 O SER A 231 N VAL A 201 SHEET 8 AA210 SER A 246 LYS A 255 -1 O ILE A 251 N VAL A 234 SHEET 9 AA210 ILE A 214 ASP A 216 1 N TYR A 215 O ALA A 250 SHEET 10 AA210 ILE A 222 HIS A 223 -1 O HIS A 223 N ILE A 214 SHEET 1 AA3 6 VAL A 110 ALA A 111 0 SHEET 2 AA3 6 SER A 126 VAL A 128 1 O SER A 126 N VAL A 110 SHEET 3 AA3 6 ALA A 144 VAL A 146 1 O VAL A 146 N TYR A 127 SHEET 4 AA3 6 GLY A 163 ILE A 164 1 O ILE A 164 N THR A 145 SHEET 5 AA3 6 GLU A 189 ILE A 190 1 O ILE A 190 N GLY A 163 SHEET 6 AA3 6 TYR A 207 ILE A 208 1 O ILE A 208 N GLU A 189 SHEET 1 AA4 6 PHE A 116 GLN A 117 0 SHEET 2 AA4 6 TYR A 133 VAL A 134 1 O VAL A 134 N PHE A 116 SHEET 3 AA4 6 GLN A 151 ILE A 152 1 O ILE A 152 N TYR A 133 SHEET 4 AA4 6 ILE A 177 ILE A 178 1 O ILE A 178 N GLN A 151 SHEET 5 AA4 6 ILE A 195 VAL A 196 1 O VAL A 196 N ILE A 177 SHEET 6 AA4 6 ARG A 226 VAL A 227 1 O VAL A 227 N ILE A 195 LINK CA CA A 302 O HOH A 410 1555 1555 2.42 LINK CA CA A 302 O HOH A 410 1555 4555 2.42 CISPEP 1 PRO A 107 PRO A 108 0 5.87 CISPEP 2 GLU A 169 PRO A 170 0 -7.27 SITE 1 AC1 7 SER A 203 MET A 204 SER A 211 THR A 212 SITE 2 AC1 7 TYR A 248 HOH A 475 HOH A 512 SITE 1 AC2 2 CYS A 78 HOH A 410 CRYST1 92.250 92.250 218.440 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010840 0.006259 0.000000 0.00000 SCALE2 0.000000 0.012517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004578 0.00000