HEADER HYDROLASE 17-AUG-17 6APM TITLE HEN EGG-WHITE LYSOZYME (WT), SOLVED WITH SERIAL MILLISECOND TITLE 2 CRYSTALLOGRAPHY USING SYNCHROTRON RADIATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: LYZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEWL, LYSOZYME, XFEL CRYSTAL STRUCTURE, SERIAL MILLISECOND KEYWDS 2 CRYSTALLOGRAPHY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.Y.LYUBIMOV,I.I.MATHEWS,M.UERVIVOJNANGKOORN,S.M.SOLTIS,A.E.COHEN REVDAT 2 04-OCT-23 6APM 1 REMARK REVDAT 1 04-APR-18 6APM 0 JRNL AUTH I.I.MATHEWS,K.ALLISON,T.ROBBINS,A.Y.LYUBIMOV, JRNL AUTH 2 M.UERVIROJNANGKOORN,A.T.BRUNGER,C.KHOSLA,H.DEMIRCI, JRNL AUTH 3 S.E.MCPHILLIPS,M.HOLLENBECK,M.SOLTIS,A.E.COHEN JRNL TITL THE CONFORMATIONAL FLEXIBILITY OF THE ACYLTRANSFERASE FROM JRNL TITL 2 THE DISORAZOLE POLYKETIDE SYNTHASE IS REVEALED BY AN X-RAY JRNL TITL 3 FREE-ELECTRON LASER USING A ROOM-TEMPERATURE SAMPLE DELIVERY JRNL TITL 4 METHOD FOR SERIAL CRYSTALLOGRAPHY. JRNL REF BIOCHEMISTRY V. 56 4751 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28832129 JRNL DOI 10.1021/ACS.BIOCHEM.7B00711 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5000 - 3.7243 1.00 1299 145 0.1877 0.2054 REMARK 3 2 3.7243 - 2.9564 1.00 1197 132 0.1849 0.2149 REMARK 3 3 2.9564 - 2.5828 1.00 1197 134 0.2027 0.2351 REMARK 3 4 2.5828 - 2.3466 1.00 1197 132 0.2087 0.2413 REMARK 3 5 2.3466 - 2.1785 1.00 1163 130 0.2330 0.2608 REMARK 3 6 2.1785 - 2.0500 1.00 1165 130 0.2559 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1069 REMARK 3 ANGLE : 0.703 1457 REMARK 3 CHIRALITY : 0.157 151 REMARK 3 PLANARITY : 0.003 192 REMARK 3 DIHEDRAL : 24.703 655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6945 -16.4417 -9.5325 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.2013 REMARK 3 T33: 0.1542 T12: 0.0319 REMARK 3 T13: 0.0481 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.0424 L22: 0.0093 REMARK 3 L33: -0.0020 L12: 0.0148 REMARK 3 L13: -0.0020 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.1723 S13: 0.0250 REMARK 3 S21: -0.0294 S22: -0.0067 S23: -0.0338 REMARK 3 S31: -0.0794 S32: 0.0596 S33: 0.0077 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7340 -24.4873 -2.1307 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.0825 REMARK 3 T33: 0.0790 T12: 0.0008 REMARK 3 T13: -0.0133 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.0902 L22: 0.1206 REMARK 3 L33: 0.1962 L12: 0.0254 REMARK 3 L13: 0.0194 L23: 0.1493 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.0578 S13: 0.0004 REMARK 3 S21: -0.0021 S22: -0.0714 S23: -0.0128 REMARK 3 S31: -0.0388 S32: -0.0079 S33: -0.0834 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6099 -18.1112 -0.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: -0.0679 REMARK 3 T33: 0.0022 T12: 0.0389 REMARK 3 T13: 0.0215 T23: 0.2020 REMARK 3 L TENSOR REMARK 3 L11: 0.0605 L22: 0.0945 REMARK 3 L33: 0.3216 L12: 0.0454 REMARK 3 L13: -0.0807 L23: 0.0187 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.0081 S13: 0.0232 REMARK 3 S21: 0.0211 S22: 0.0895 S23: 0.0351 REMARK 3 S31: 0.1337 S32: 0.0449 S33: 0.1029 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7403 -17.8403 1.5432 REMARK 3 T TENSOR REMARK 3 T11: -0.0578 T22: -0.1541 REMARK 3 T33: 0.0920 T12: 0.2315 REMARK 3 T13: 0.0095 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.0020 L22: 0.0159 REMARK 3 L33: 0.0210 L12: -0.0036 REMARK 3 L13: -0.0017 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0058 S13: -0.0371 REMARK 3 S21: -0.0053 S22: 0.0071 S23: 0.0453 REMARK 3 S31: 0.0104 S32: 0.0186 S33: 0.0200 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8300 -15.9483 10.5163 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1634 REMARK 3 T33: 0.0488 T12: 0.0741 REMARK 3 T13: 0.0026 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.1429 L22: 0.0664 REMARK 3 L33: 0.0397 L12: -0.0651 REMARK 3 L13: -0.0499 L23: 0.0515 REMARK 3 S TENSOR REMARK 3 S11: -0.1018 S12: -0.0805 S13: -0.0712 REMARK 3 S21: 0.0716 S22: -0.0159 S23: -0.0299 REMARK 3 S31: 0.0956 S32: 0.0517 S33: -0.0743 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5188 -14.1022 14.1853 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.3325 REMARK 3 T33: 0.1066 T12: 0.0641 REMARK 3 T13: -0.0246 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.0623 L22: 0.0306 REMARK 3 L33: 0.0037 L12: -0.0433 REMARK 3 L13: -0.0068 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.1398 S13: 0.0007 REMARK 3 S21: 0.1569 S22: 0.0251 S23: 0.0169 REMARK 3 S31: 0.0058 S32: -0.1338 S33: 0.0208 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4719 -9.7541 0.6957 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1215 REMARK 3 T33: 0.1621 T12: 0.0444 REMARK 3 T13: 0.0284 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.0114 L22: 0.0164 REMARK 3 L33: 0.0296 L12: 0.0052 REMARK 3 L13: -0.0155 L23: -0.0207 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.0338 S13: 0.0596 REMARK 3 S21: -0.0616 S22: -0.0615 S23: -0.0552 REMARK 3 S31: -0.0138 S32: 0.0090 S33: -0.0080 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2007 -17.6721 5.6124 REMARK 3 T TENSOR REMARK 3 T11: 0.0873 T22: 0.1219 REMARK 3 T33: 0.1610 T12: -0.0031 REMARK 3 T13: 0.0212 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.0270 L22: 0.0370 REMARK 3 L33: 0.0081 L12: -0.0113 REMARK 3 L13: 0.0055 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0014 S13: 0.1631 REMARK 3 S21: 0.0726 S22: -0.0196 S23: -0.0759 REMARK 3 S31: -0.0471 S32: 0.0664 S33: 0.0039 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1558 -29.9912 3.3154 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.1570 REMARK 3 T33: 0.0949 T12: -0.0069 REMARK 3 T13: -0.0029 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.0085 L22: 0.0460 REMARK 3 L33: 0.0165 L12: 0.0186 REMARK 3 L13: 0.0032 L23: 0.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: 0.0308 S13: 0.0093 REMARK 3 S21: 0.0940 S22: 0.0493 S23: -0.0683 REMARK 3 S31: 0.0533 S32: -0.1993 S33: 0.0495 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3966 -32.2587 -8.1554 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: -0.0714 REMARK 3 T33: 0.1161 T12: 0.1001 REMARK 3 T13: 0.1174 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 0.0469 L22: 0.0201 REMARK 3 L33: 0.0116 L12: 0.0061 REMARK 3 L13: 0.0098 L23: -0.0111 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.0500 S13: -0.0585 REMARK 3 S21: 0.0045 S22: 0.0232 S23: -0.0453 REMARK 3 S31: 0.0204 S32: -0.0055 S33: 0.0419 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7560 -23.0363 -15.0491 REMARK 3 T TENSOR REMARK 3 T11: 0.3935 T22: 0.4329 REMARK 3 T33: 0.3107 T12: 0.0227 REMARK 3 T13: 0.1644 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0742 L22: 0.0086 REMARK 3 L33: 0.0104 L12: -0.0222 REMARK 3 L13: 0.0251 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.0479 S13: 0.0627 REMARK 3 S21: 0.0154 S22: -0.0386 S23: -0.1172 REMARK 3 S31: -0.0344 S32: 0.0997 S33: -0.0282 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6APM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.PRIME REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 29.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M NACL, 6% PEG 6K, 0.15 M SODIUM REMARK 280 ACETATE (PH 4.5), SMALL TUBES, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.12250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.51750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.51750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.68375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.51750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.51750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.56125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.51750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.51750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.68375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.51750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.51750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.56125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 33 O HOH A 302 1.53 REMARK 500 O HOH A 308 O HOH A 372 1.85 REMARK 500 O HOH A 344 O HOH A 374 1.97 REMARK 500 OD2 ASP A 87 O HOH A 301 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 99 CG1 - CB - CG2 ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 69 76.90 -115.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 77.0 REMARK 620 3 SER A 72 OG 95.1 158.1 REMARK 620 4 ARG A 73 O 89.4 91.1 109.3 REMARK 620 5 HOH A 350 O 175.0 98.1 89.7 90.0 REMARK 620 6 HOH A 360 O 104.4 85.2 77.0 164.5 75.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6APK RELATED DB: PDB REMARK 900 TRANS-ACTING TRANSFERASE FROM DISORAZOLE SYNTHASE FROM XFEL DATA REMARK 900 RELATED ID: 6APG RELATED DB: PDB REMARK 900 TRANS-ACTING TRANSFERASE FROM DISORAZOLE SYNTHASE WITH MALONATE REMARK 900 RELATED ID: 6APF RELATED DB: PDB REMARK 900 TRANS-ACTING TRANSFERASE FROM DISORAZOLE SYNTHASE COMPLEXED WITH REMARK 900 CITRATE DBREF 6APM A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET NA A 201 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *104(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASP A 101 GLY A 102 5 2 HELIX 7 AA7 ASN A 103 ALA A 107 5 5 HELIX 8 AA8 TRP A 108 CYS A 115 1 8 HELIX 9 AA9 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O SER A 60 NA NA A 201 1555 1555 2.41 LINK O CYS A 64 NA NA A 201 1555 1555 2.56 LINK OG SER A 72 NA NA A 201 1555 1555 2.47 LINK O ARG A 73 NA NA A 201 1555 1555 2.75 LINK NA NA A 201 O HOH A 350 1555 1555 2.62 LINK NA NA A 201 O HOH A 360 1555 1555 2.46 SITE 1 AC1 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC1 6 HOH A 350 HOH A 360 CRYST1 79.035 79.035 38.245 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026147 0.00000