HEADER IMMUNE SYSTEM 18-AUG-17 6AQ7 TITLE STRUCTURE OF POM6 FAB FRAGMENT COMPLEXED WITH MOUSE PRPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 127-225; COMPND 5 SYNONYM: PRP,PRP27-30,PRP33-35C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POM6 FAB HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: POM6 FAB LIGHT CHAIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRNP, PRN-P, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 23 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA KEYWDS PRION, ANTIBODY, CHAPERONE, ANTIGEN-ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.K.BARAL,M.SWAYAMPAKULA,M.N.G.JAMES REVDAT 4 04-OCT-23 6AQ7 1 REMARK REVDAT 3 07-NOV-18 6AQ7 1 SOURCE REVDAT 2 16-MAY-18 6AQ7 1 JRNL REVDAT 1 04-APR-18 6AQ7 0 JRNL AUTH P.K.BARAL,M.SWAYAMPAKULA,A.AGUZZI,M.N.G.JAMES JRNL TITL STRUCTURAL CHARACTERIZATION OF POM6 FAB AND MOUSE PRION JRNL TITL 2 PROTEIN COMPLEX IDENTIFIES KEY REGIONS FOR PRIONS JRNL TITL 3 CONFORMATIONAL CONVERSION. JRNL REF FEBS J. V. 285 1701 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29569342 JRNL DOI 10.1111/FEBS.14438 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0797 - 4.9656 1.00 2817 148 0.1802 0.2017 REMARK 3 2 4.9656 - 3.9419 1.00 2691 142 0.1431 0.1754 REMARK 3 3 3.9419 - 3.4438 1.00 2649 140 0.1629 0.1714 REMARK 3 4 3.4438 - 3.1290 1.00 2644 139 0.1813 0.2155 REMARK 3 5 3.1290 - 2.9048 1.00 2643 139 0.1877 0.2297 REMARK 3 6 2.9048 - 2.7335 1.00 2601 137 0.1969 0.2265 REMARK 3 7 2.7335 - 2.5966 1.00 2607 137 0.2032 0.2700 REMARK 3 8 2.5966 - 2.4836 1.00 2620 138 0.2065 0.2441 REMARK 3 9 2.4836 - 2.3880 1.00 2614 138 0.2058 0.2324 REMARK 3 10 2.3880 - 2.3056 1.00 2584 136 0.2111 0.2722 REMARK 3 11 2.3056 - 2.2335 1.00 2624 138 0.2135 0.2359 REMARK 3 12 2.2335 - 2.1697 1.00 2585 136 0.2139 0.2792 REMARK 3 13 2.1697 - 2.1126 1.00 2578 136 0.2217 0.2619 REMARK 3 14 2.1126 - 2.0610 1.00 2588 136 0.2331 0.2831 REMARK 3 15 2.0610 - 2.0142 1.00 2603 137 0.2362 0.2847 REMARK 3 16 2.0142 - 1.9713 1.00 2599 137 0.2587 0.2932 REMARK 3 17 1.9713 - 1.9319 1.00 2572 135 0.2873 0.3643 REMARK 3 18 1.9319 - 1.8954 1.00 2572 136 0.3313 0.3405 REMARK 3 19 1.8954 - 1.8615 0.99 2537 133 0.3388 0.3609 REMARK 3 20 1.8615 - 1.8300 0.96 2493 132 0.3660 0.4034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4270 REMARK 3 ANGLE : 1.010 5807 REMARK 3 CHIRALITY : 0.054 643 REMARK 3 PLANARITY : 0.005 740 REMARK 3 DIHEDRAL : 6.571 2550 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4J8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE PH 7.0, 12% REMARK 280 PEG8000 ALONG WITH 5MM TCEP, 5MM PRASEODYMIUM ACETATE AND REMARK 280 ETHANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.85000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 104 REMARK 465 GLY A 105 REMARK 465 SER A 106 REMARK 465 SER A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 SER A 114 REMARK 465 SER A 115 REMARK 465 GLY A 116 REMARK 465 LEU A 117 REMARK 465 VAL A 118 REMARK 465 PRO A 119 REMARK 465 ARG A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 HIS A 123 REMARK 465 MET A 124 REMARK 465 TYR A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN H 60 O10 TCE H 301 2.09 REMARK 500 O HOH L 616 O HOH L 661 2.10 REMARK 500 O ALA L 216 O HOH L 501 2.11 REMARK 500 O HOH H 528 O HOH H 553 2.13 REMARK 500 NH2 ARG H 40 O HOH H 401 2.14 REMARK 500 O HOH A 640 O HOH A 652 2.14 REMARK 500 OE2 GLU H 149 O HOH H 402 2.16 REMARK 500 O HOH H 514 O HOH H 565 2.17 REMARK 500 O HOH L 614 O HOH L 664 2.18 REMARK 500 O HOH H 454 O HOH H 460 2.18 REMARK 500 O HOH L 516 O HOH L 616 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 437 O HOH L 544 2558 2.13 REMARK 500 O HOH A 656 O HOH L 527 4554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN H 60 103.59 -59.64 REMARK 500 LYS H 64 -117.87 77.66 REMARK 500 ALA H 91 171.64 179.98 REMARK 500 ALA H 101 139.24 -171.61 REMARK 500 ALA H 130 48.56 -63.13 REMARK 500 ALA H 132 59.24 -102.55 REMARK 500 TYR L 36 72.33 -108.23 REMARK 500 ALA L 55 -37.78 71.46 REMARK 500 LYS L 72 -95.65 68.65 REMARK 500 SER L 88 -176.19 169.71 REMARK 500 ASN L 194 -53.37 -120.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 678 DISTANCE = 8.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TCE H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 401 DBREF 6AQ7 A 127 225 UNP P04925 PRIO_MOUSE 127 225 DBREF 6AQ7 H 1 214 PDB 6AQ7 6AQ7 1 214 DBREF 6AQ7 L 1 216 PDB 6AQ7 6AQ7 1 216 SEQADV 6AQ7 MET A 104 UNP P04925 INITIATING METHIONINE SEQADV 6AQ7 GLY A 105 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 SER A 106 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 SER A 107 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 108 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 109 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 110 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 111 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 112 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 113 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 SER A 114 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 SER A 115 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 GLY A 116 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 LEU A 117 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 VAL A 118 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 PRO A 119 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 ARG A 120 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 GLY A 121 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 SER A 122 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 HIS A 123 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 MET A 124 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 GLY A 125 UNP P04925 EXPRESSION TAG SEQADV 6AQ7 GLY A 126 UNP P04925 EXPRESSION TAG SEQRES 1 A 122 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 122 LEU VAL PRO ARG GLY SER HIS MET GLY GLY TYR MET LEU SEQRES 3 A 122 GLY SER ALA MET SER ARG PRO MET ILE HIS PHE GLY ASN SEQRES 4 A 122 ASP TRP GLU ASP ARG TYR TYR ARG GLU ASN MET TYR ARG SEQRES 5 A 122 TYR PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR SEQRES 6 A 122 SER ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE SEQRES 7 A 122 THR ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY SEQRES 8 A 122 GLU ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG SEQRES 9 A 122 VAL VAL GLU GLN MET CYS VAL THR GLN TYR GLN LYS GLU SEQRES 10 A 122 SER GLN ALA TYR TYR SEQRES 1 H 214 VAL LYS LEU GLN GLU SER GLY PRO GLN LEU VAL ARG PRO SEQRES 2 H 214 GLY SER SER VAL LYS ILE SER CYS LYS ALA SER GLY TYR SEQRES 3 H 214 SER PHE THR GLY TYR PHE MET HIS TRP VAL ARG GLN THR SEQRES 4 H 214 ARG VAL LYS SER LEU GLU TRP ILE GLY ARG ILE ASN PRO SEQRES 5 H 214 TYR ASN GLY ASN THR ASN TYR ASN LYS ILE PHE LYS LYS SEQRES 6 H 214 LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR ALA SEQRES 7 H 214 TYR MET GLN LEU ASN SER LEU THR SER ASP ASP SER ALA SEQRES 8 H 214 VAL TYR PHE CYS ALA ARG SER GLN ASP ALA TRP ASP TYR SEQRES 9 H 214 TRP GLY GLN GLY VAL THR ILE THR VAL SER SER ALA LYS SEQRES 10 H 214 THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SER ALA SEQRES 11 H 214 ALA ALA ALA ASN SER MET VAL THR LEU GLY CYS LEU VAL SEQRES 12 H 214 LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SEQRES 13 H 214 SER GLY SER LEU SER GLY GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 214 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 H 214 THR VAL PRO SER SER THR TRP PRO SER GLU THR ILE THR SEQRES 16 H 214 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 H 214 LYS LYS ILE VAL PRO ARG SEQRES 1 L 216 ASP ILE VAL MET THR GLN SER PRO ALA VAL LEU ALA THR SEQRES 2 L 216 SER ASN GLY GLU ARG ALA THR ILE THR CYS LYS ALA SER SEQRES 3 L 216 MET SER VAL SER THR SER THR TYR SER TYR MET ASP TRP SEQRES 4 L 216 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 216 LYS LYS ALA SER ASN ASN GLU THR GLY VAL PRO ALA ARG SEQRES 6 L 216 PHE SER GLY SER GLY THR LYS LYS ASP PHE THR LEU THR SEQRES 7 L 216 ILE HIS PRO VAL GLN GLN GLU ASP VAL SER THR TYR TYR SEQRES 8 L 216 CYS GLN HIS SER TRP GLN THR PRO LEU THR PHE GLY ALA SEQRES 9 L 216 GLY THR VAL LEU GLU LEU LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 216 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 216 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 216 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 216 SER GLU ARG GLN ASN GLY VAL LEU ASN SER GLU THR ASP SEQRES 14 L 216 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 216 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 216 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 216 ILE VAL LYS SER PHE ASN ARG ALA HET GOL A 501 6 HET TCE H 301 16 HET GOL L 401 6 HETNAM GOL GLYCEROL HETNAM TCE 3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TCE 3-[BIS(2-CARBOXYETHYL)PHOSPHANYL]PROPANOIC ACID FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 TCE C9 H15 O6 P FORMUL 7 HOH *460(H2 O) HELIX 1 AA1 ASN A 142 MET A 153 1 12 HELIX 2 AA2 TYR A 154 TYR A 156 5 3 HELIX 3 AA3 PRO A 164 TYR A 168 5 5 HELIX 4 AA4 ASN A 170 THR A 192 1 23 HELIX 5 AA5 THR A 198 ALA A 223 1 26 HELIX 6 AA6 SER H 27 TYR H 31 5 5 HELIX 7 AA7 LYS H 61 LYS H 64 5 4 HELIX 8 AA8 THR H 86 SER H 90 5 5 HELIX 9 AA9 SER H 157 SER H 159 5 3 HELIX 10 AB1 PRO H 201 SER H 204 5 4 HELIX 11 AB2 GLN L 83 VAL L 87 5 5 HELIX 12 AB3 SER L 125 SER L 131 1 7 HELIX 13 AB4 LYS L 187 GLU L 191 1 5 SHEET 1 AA1 2 MET A 128 LEU A 129 0 SHEET 2 AA1 2 TYR A 161 TYR A 162 -1 O TYR A 162 N MET A 128 SHEET 1 AA2 4 LYS H 2 GLU H 5 0 SHEET 2 AA2 4 VAL H 17 SER H 24 -1 O LYS H 22 N GLN H 4 SHEET 3 AA2 4 THR H 77 LEU H 82 -1 O MET H 80 N ILE H 19 SHEET 4 AA2 4 ALA H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA3 6 GLN H 9 VAL H 11 0 SHEET 2 AA3 6 VAL H 109 VAL H 113 1 O THR H 112 N VAL H 11 SHEET 3 AA3 6 ALA H 91 SER H 98 -1 N TYR H 93 O VAL H 109 SHEET 4 AA3 6 PHE H 32 GLN H 38 -1 N VAL H 36 O PHE H 94 SHEET 5 AA3 6 LEU H 44 ILE H 50 -1 O GLU H 45 N ARG H 37 SHEET 6 AA3 6 THR H 57 TYR H 59 -1 O ASN H 58 N ARG H 49 SHEET 1 AA4 4 GLN H 9 VAL H 11 0 SHEET 2 AA4 4 VAL H 109 VAL H 113 1 O THR H 112 N VAL H 11 SHEET 3 AA4 4 ALA H 91 SER H 98 -1 N TYR H 93 O VAL H 109 SHEET 4 AA4 4 TRP H 102 TRP H 105 -1 O TYR H 104 N ARG H 97 SHEET 1 AA5 4 SER H 122 LEU H 126 0 SHEET 2 AA5 4 MET H 136 TYR H 146 -1 O LEU H 142 N TYR H 124 SHEET 3 AA5 4 LEU H 175 PRO H 185 -1 O VAL H 184 N VAL H 137 SHEET 4 AA5 4 VAL H 164 GLN H 172 -1 N PHE H 167 O SER H 179 SHEET 1 AA6 3 THR H 152 TRP H 155 0 SHEET 2 AA6 3 THR H 195 HIS H 200 -1 O ASN H 197 N THR H 154 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O LYS H 209 N CYS H 196 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 74 ILE L 79 -1 O LEU L 77 N ILE L 21 SHEET 4 AA7 4 PHE L 66 THR L 71 -1 N SER L 69 O THR L 76 SHEET 1 AA8 6 VAL L 10 SER L 14 0 SHEET 2 AA8 6 THR L 106 LYS L 111 1 O GLU L 109 N LEU L 11 SHEET 3 AA8 6 SER L 88 HIS L 94 -1 N SER L 88 O LEU L 108 SHEET 4 AA8 6 MET L 37 GLN L 42 -1 N ASP L 38 O GLN L 93 SHEET 5 AA8 6 LYS L 49 LYS L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AA8 6 ASN L 57 ASN L 58 -1 O ASN L 57 N LYS L 53 SHEET 1 AA9 4 THR L 118 PHE L 122 0 SHEET 2 AA9 4 GLY L 133 PHE L 143 -1 O ASN L 141 N THR L 118 SHEET 3 AA9 4 TYR L 177 THR L 186 -1 O LEU L 183 N VAL L 136 SHEET 4 AA9 4 VAL L 163 GLU L 167 -1 N SER L 166 O SER L 180 SHEET 1 AB1 4 SER L 157 ARG L 159 0 SHEET 2 AB1 4 ILE L 148 ILE L 154 -1 N TRP L 152 O ARG L 159 SHEET 3 AB1 4 SER L 195 HIS L 202 -1 O GLU L 199 N LYS L 151 SHEET 4 AB1 4 ILE L 209 ASN L 214 -1 O ILE L 209 N ALA L 200 SSBOND 1 CYS A 178 CYS A 213 1555 1555 2.04 SSBOND 2 CYS H 21 CYS H 95 1555 1555 2.07 SSBOND 3 CYS H 141 CYS H 196 1555 1555 2.07 SSBOND 4 CYS L 23 CYS L 92 1555 1555 2.11 SSBOND 5 CYS L 138 CYS L 198 1555 1555 2.07 CISPEP 1 PHE H 147 PRO H 148 0 -5.27 CISPEP 2 GLU H 149 PRO H 150 0 1.69 CISPEP 3 TRP H 189 PRO H 190 0 5.66 CISPEP 4 SER L 7 PRO L 8 0 -3.72 CISPEP 5 HIS L 80 PRO L 81 0 -2.59 CISPEP 6 THR L 98 PRO L 99 0 -2.49 CISPEP 7 TYR L 144 PRO L 145 0 2.64 SITE 1 AC1 7 TYR A 148 ARG A 155 ASN A 196 ASP A 201 SITE 2 AC1 7 HOH A 637 THR L 31 TYR L 36 SITE 1 AC2 4 GLU H 45 ASN H 60 HOH H 439 HOH H 450 SITE 1 AC3 5 SER L 28 SER L 30 THR L 31 THR L 71 SITE 2 AC3 5 LYS L 72 CRYST1 72.040 82.420 103.700 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009643 0.00000