HEADER TRANSFERASE 21-AUG-17 6AQU TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PURINE NUCLEOSIDE TITLE 2 PHOSPHORYLASE: THE M183L MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: NA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: PNP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLASMODIUM FALCIPARUM, PURINE NUCLEOSIDE PHOSPHORYLASE (PNP), PNP KEYWDS 2 MUTATION, DRUG RESISTANT PNP., TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.HARIJAN,R.G.DUCATI,H.A.NAMANJA-MAGLIANO,J.B.BONANNO,S.C.ALMO, AUTHOR 2 V.L.SCHRAMM REVDAT 2 04-OCT-23 6AQU 1 REMARK REVDAT 1 28-MAR-18 6AQU 0 JRNL AUTH R.G.DUCATI,H.A.NAMANJA-MAGLIANO,R.K.HARIJAN,J.E.FAJARDO, JRNL AUTH 2 A.FISER,J.P.DAILY,V.L.SCHRAMM JRNL TITL GENETIC RESISTANCE TO PURINE NUCLEOSIDE PHOSPHORYLASE JRNL TITL 2 INHIBITION INPLASMODIUM FALCIPARUM. JRNL REF PROC. NATL. ACAD. SCI. V. 115 2114 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29440412 JRNL DOI 10.1073/PNAS.1525670115 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.828 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.342 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3369 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3226 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4551 ; 1.486 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7473 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 435 ; 6.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;42.485 ;24.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;17.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3702 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 617 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1761 ; 5.373 ; 7.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1760 ; 5.374 ; 7.812 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2189 ; 8.289 ;11.692 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2190 ; 8.289 ;11.695 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1608 ; 5.191 ; 8.433 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1597 ; 5.116 ; 8.429 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2345 ; 8.123 ;12.408 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3620 ;11.534 ;93.609 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3620 ;11.535 ;93.632 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 245 B 3 245 12790 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 93.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM ACETATE, 20 %(W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 66.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.91000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.95500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.86500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.95500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 66.25000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.91000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 66.25000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.91000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 66.25000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 86.86500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 28.95500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.25000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 28.95500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 86.86500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 66.25000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 66.25000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 67 REMARK 465 SER A 68 REMARK 465 ALA A 69 REMARK 465 TYR A 161 REMARK 465 PRO A 162 REMARK 465 ASN A 163 REMARK 465 LYS A 164 REMARK 465 ILE A 165 REMARK 465 ILE A 166 REMARK 465 PRO A 167 REMARK 465 PHE A 210 REMARK 465 LYS A 211 REMARK 465 TRP A 212 REMARK 465 ASP A 213 REMARK 465 GLU A 214 REMARK 465 GLY A 215 REMARK 465 ASP A 216 REMARK 465 PHE A 217 REMARK 465 ASP A 218 REMARK 465 ASN A 219 REMARK 465 ASN A 220 REMARK 465 LEU A 221 REMARK 465 VAL A 222 REMARK 465 PRO A 223 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 TYR B 160 REMARK 465 TYR B 161 REMARK 465 PRO B 162 REMARK 465 ASN B 163 REMARK 465 LYS B 164 REMARK 465 ILE B 165 REMARK 465 ILE B 166 REMARK 465 PHE B 210 REMARK 465 LYS B 211 REMARK 465 TRP B 212 REMARK 465 ASP B 213 REMARK 465 GLU B 214 REMARK 465 GLY B 215 REMARK 465 ASP B 216 REMARK 465 PHE B 217 REMARK 465 ASP B 218 REMARK 465 ASN B 219 REMARK 465 ASN B 220 REMARK 465 LEU B 221 REMARK 465 VAL B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 167 CG CD REMARK 470 PRO B 209 CG CD REMARK 470 LYS B 231 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 209 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 -68.15 65.05 REMARK 500 LYS A 55 44.63 33.47 REMARK 500 HIS A 64 3.98 -152.14 REMARK 500 GLU A 114 43.90 -99.96 REMARK 500 ASN A 146 59.76 38.07 REMARK 500 MET A 159 -78.06 -113.57 REMARK 500 ASP A 206 -89.45 -102.59 REMARK 500 CYS A 208 85.47 -165.64 REMARK 500 ARG B 45 -67.22 64.14 REMARK 500 LYS B 55 43.60 33.29 REMARK 500 HIS B 64 3.18 -150.26 REMARK 500 ALA B 69 -91.98 -54.17 REMARK 500 GLU B 114 41.81 -98.14 REMARK 500 ASN B 146 60.21 37.36 REMARK 500 ASP B 206 -77.36 -98.63 REMARK 500 CYS B 208 -106.24 -75.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 DBREF 6AQU A 1 245 UNP Q8T9Z7 Q8T9Z7_PLAFA 1 245 DBREF 6AQU B 1 245 UNP Q8T9Z7 Q8T9Z7_PLAFA 1 245 SEQADV 6AQU GLY A -1 UNP Q8T9Z7 EXPRESSION TAG SEQADV 6AQU SER A 0 UNP Q8T9Z7 EXPRESSION TAG SEQADV 6AQU LEU A 183 UNP Q8T9Z7 MET 183 ENGINEERED MUTATION SEQADV 6AQU GLY B -1 UNP Q8T9Z7 EXPRESSION TAG SEQADV 6AQU SER B 0 UNP Q8T9Z7 EXPRESSION TAG SEQADV 6AQU LEU B 183 UNP Q8T9Z7 MET 183 ENGINEERED MUTATION SEQRES 1 A 247 GLY SER MET ASP ASN LEU LEU ARG HIS LEU LYS ILE SER SEQRES 2 A 247 LYS GLU GLN ILE THR PRO VAL VAL LEU VAL VAL GLY ASP SEQRES 3 A 247 PRO GLY ARG VAL ASP LYS ILE LYS VAL VAL CYS ASP SER SEQRES 4 A 247 TYR VAL ASP LEU ALA TYR ASN ARG GLU TYR LYS SER VAL SEQRES 5 A 247 GLU CYS HIS TYR LYS GLY GLN LYS PHE LEU CYS VAL SER SEQRES 6 A 247 HIS GLY VAL GLY SER ALA GLY CYS ALA VAL CYS PHE GLU SEQRES 7 A 247 GLU LEU CYS GLN ASN GLY ALA LYS VAL ILE ILE ARG ALA SEQRES 8 A 247 GLY SER CYS GLY SER LEU GLN PRO ASP LEU ILE LYS ARG SEQRES 9 A 247 GLY ASP ILE CYS ILE CYS ASN ALA ALA VAL ARG GLU ASP SEQRES 10 A 247 ARG VAL SER HIS LEU LEU ILE HIS GLY ASP PHE PRO ALA SEQRES 11 A 247 VAL GLY ASP PHE ASP VAL TYR ASP THR LEU ASN LYS CYS SEQRES 12 A 247 ALA GLN GLU LEU ASN VAL PRO VAL PHE ASN GLY ILE SER SEQRES 13 A 247 VAL SER SER ASP MET TYR TYR PRO ASN LYS ILE ILE PRO SEQRES 14 A 247 SER ARG LEU GLU ASP TYR SER LYS ALA ASN ALA ALA VAL SEQRES 15 A 247 VAL GLU LEU GLU LEU ALA THR LEU MET VAL ILE GLY THR SEQRES 16 A 247 LEU ARG LYS VAL LYS THR GLY GLY ILE LEU ILE VAL ASP SEQRES 17 A 247 GLY CYS PRO PHE LYS TRP ASP GLU GLY ASP PHE ASP ASN SEQRES 18 A 247 ASN LEU VAL PRO HIS GLN LEU GLU ASN MET ILE LYS ILE SEQRES 19 A 247 ALA LEU GLY ALA CYS ALA LYS LEU ALA THR LYS TYR ALA SEQRES 1 B 247 GLY SER MET ASP ASN LEU LEU ARG HIS LEU LYS ILE SER SEQRES 2 B 247 LYS GLU GLN ILE THR PRO VAL VAL LEU VAL VAL GLY ASP SEQRES 3 B 247 PRO GLY ARG VAL ASP LYS ILE LYS VAL VAL CYS ASP SER SEQRES 4 B 247 TYR VAL ASP LEU ALA TYR ASN ARG GLU TYR LYS SER VAL SEQRES 5 B 247 GLU CYS HIS TYR LYS GLY GLN LYS PHE LEU CYS VAL SER SEQRES 6 B 247 HIS GLY VAL GLY SER ALA GLY CYS ALA VAL CYS PHE GLU SEQRES 7 B 247 GLU LEU CYS GLN ASN GLY ALA LYS VAL ILE ILE ARG ALA SEQRES 8 B 247 GLY SER CYS GLY SER LEU GLN PRO ASP LEU ILE LYS ARG SEQRES 9 B 247 GLY ASP ILE CYS ILE CYS ASN ALA ALA VAL ARG GLU ASP SEQRES 10 B 247 ARG VAL SER HIS LEU LEU ILE HIS GLY ASP PHE PRO ALA SEQRES 11 B 247 VAL GLY ASP PHE ASP VAL TYR ASP THR LEU ASN LYS CYS SEQRES 12 B 247 ALA GLN GLU LEU ASN VAL PRO VAL PHE ASN GLY ILE SER SEQRES 13 B 247 VAL SER SER ASP MET TYR TYR PRO ASN LYS ILE ILE PRO SEQRES 14 B 247 SER ARG LEU GLU ASP TYR SER LYS ALA ASN ALA ALA VAL SEQRES 15 B 247 VAL GLU LEU GLU LEU ALA THR LEU MET VAL ILE GLY THR SEQRES 16 B 247 LEU ARG LYS VAL LYS THR GLY GLY ILE LEU ILE VAL ASP SEQRES 17 B 247 GLY CYS PRO PHE LYS TRP ASP GLU GLY ASP PHE ASP ASN SEQRES 18 B 247 ASN LEU VAL PRO HIS GLN LEU GLU ASN MET ILE LYS ILE SEQRES 19 B 247 ALA LEU GLY ALA CYS ALA LYS LEU ALA THR LYS TYR ALA HET PO4 A 301 5 HET PO4 B 301 5 HET PO4 B 302 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *12(H2 O) HELIX 1 AA1 ASP A 24 VAL A 33 1 10 HELIX 2 AA2 CYS A 71 ASN A 81 1 11 HELIX 3 AA3 ASP A 115 ILE A 122 1 8 HELIX 4 AA4 ASP A 131 LEU A 145 1 15 HELIX 5 AA5 ARG A 169 ALA A 176 1 8 HELIX 6 AA6 GLU A 184 LYS A 196 1 13 HELIX 7 AA7 GLN A 225 THR A 242 1 18 HELIX 8 AA8 ASP B 24 VAL B 33 1 10 HELIX 9 AA9 GLY B 70 ASN B 81 1 12 HELIX 10 AB1 ASP B 115 ILE B 122 1 8 HELIX 11 AB2 ASP B 131 LEU B 145 1 15 HELIX 12 AB3 SER B 168 ALA B 176 1 9 HELIX 13 AB4 GLU B 184 LYS B 196 1 13 HELIX 14 AB5 HIS B 224 THR B 242 1 19 SHEET 1 AA1 9 SER A 37 ASN A 44 0 SHEET 2 AA1 9 TYR A 47 TYR A 54 -1 O GLU A 51 N VAL A 39 SHEET 3 AA1 9 GLN A 57 SER A 63 -1 O CYS A 61 N VAL A 50 SHEET 4 AA1 9 VAL A 18 VAL A 22 1 N VAL A 22 O VAL A 62 SHEET 5 AA1 9 VAL A 85 SER A 94 1 O ILE A 87 N VAL A 21 SHEET 6 AA1 9 VAL A 180 GLU A 182 -1 O VAL A 181 N GLY A 93 SHEET 7 AA1 9 PHE A 150 SER A 157 1 N SER A 157 O GLU A 182 SHEET 8 AA1 9 ILE A 105 GLU A 114 1 N ILE A 105 O PHE A 150 SHEET 9 AA1 9 ALA A 128 VAL A 129 -1 O ALA A 128 N ALA A 111 SHEET 1 AA2 8 SER A 37 ASN A 44 0 SHEET 2 AA2 8 TYR A 47 TYR A 54 -1 O GLU A 51 N VAL A 39 SHEET 3 AA2 8 GLN A 57 SER A 63 -1 O CYS A 61 N VAL A 50 SHEET 4 AA2 8 VAL A 18 VAL A 22 1 N VAL A 22 O VAL A 62 SHEET 5 AA2 8 VAL A 85 SER A 94 1 O ILE A 87 N VAL A 21 SHEET 6 AA2 8 LYS A 198 VAL A 205 1 O ILE A 202 N ARG A 88 SHEET 7 AA2 8 ILE A 105 GLU A 114 -1 N CYS A 106 O LEU A 203 SHEET 8 AA2 8 ALA A 128 VAL A 129 -1 O ALA A 128 N ALA A 111 SHEET 1 AA3 9 SER B 37 ASN B 44 0 SHEET 2 AA3 9 TYR B 47 TYR B 54 -1 O GLU B 51 N VAL B 39 SHEET 3 AA3 9 GLN B 57 VAL B 62 -1 O PHE B 59 N CYS B 52 SHEET 4 AA3 9 VAL B 18 VAL B 21 1 N LEU B 20 O VAL B 62 SHEET 5 AA3 9 VAL B 85 SER B 94 1 O ILE B 87 N VAL B 21 SHEET 6 AA3 9 VAL B 180 GLU B 182 -1 O VAL B 181 N GLY B 93 SHEET 7 AA3 9 PHE B 150 SER B 157 1 N SER B 157 O GLU B 182 SHEET 8 AA3 9 ILE B 105 GLU B 114 1 N VAL B 112 O SER B 154 SHEET 9 AA3 9 ALA B 128 VAL B 129 -1 O ALA B 128 N ALA B 111 SHEET 1 AA4 8 SER B 37 ASN B 44 0 SHEET 2 AA4 8 TYR B 47 TYR B 54 -1 O GLU B 51 N VAL B 39 SHEET 3 AA4 8 GLN B 57 VAL B 62 -1 O PHE B 59 N CYS B 52 SHEET 4 AA4 8 VAL B 18 VAL B 21 1 N LEU B 20 O VAL B 62 SHEET 5 AA4 8 VAL B 85 SER B 94 1 O ILE B 87 N VAL B 21 SHEET 6 AA4 8 LYS B 198 VAL B 205 1 O ILE B 202 N ARG B 88 SHEET 7 AA4 8 ILE B 105 GLU B 114 -1 N CYS B 106 O LEU B 203 SHEET 8 AA4 8 ALA B 128 VAL B 129 -1 O ALA B 128 N ALA B 111 SITE 1 AC1 5 GLY A 23 ARG A 27 ARG A 88 GLY A 90 SITE 2 AC1 5 SER A 91 SITE 1 AC2 7 GLY B 23 ASP B 24 ARG B 27 ARG B 88 SITE 2 AC2 7 ALA B 89 GLY B 90 SER B 91 SITE 1 AC3 2 HIS B 119 GLY B 124 CRYST1 132.500 132.500 115.820 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008634 0.00000