HEADER HYDROLASE 28-AUG-17 6ATD TITLE OXIDIZED SHP2 FORMS A DISULFIDE BOND BETWEEN CYS367 AND CYS459 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-526; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PAGE,W.PETI,D.A.CRITTON REVDAT 3 04-OCT-23 6ATD 1 REMARK REVDAT 2 29-JAN-20 6ATD 1 REMARK REVDAT 1 11-JUL-18 6ATD 0 JRNL AUTH L.E.S.F.MACHADO,D.A.CRITTON,R.PAGE,W.PETI JRNL TITL REDOX REGULATION OF A GAIN-OF-FUNCTION MUTATION (N308D) IN JRNL TITL 2 SHP2 NOONAN SYNDROME. JRNL REF ACS OMEGA V. 2 8313 2017 JRNL REFN ESSN 2470-1343 JRNL PMID 29214238 JRNL DOI 10.1021/ACSOMEGA.7B01318 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 36774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7289 - 5.8721 0.99 2715 158 0.1817 0.2347 REMARK 3 2 5.8721 - 4.6634 0.99 2701 159 0.1770 0.2258 REMARK 3 3 4.6634 - 4.0746 0.99 2709 153 0.1611 0.1983 REMARK 3 4 4.0746 - 3.7024 0.99 2701 135 0.1773 0.2047 REMARK 3 5 3.7024 - 3.4372 0.99 2704 145 0.1941 0.2642 REMARK 3 6 3.4372 - 3.2347 0.98 2693 118 0.2011 0.2330 REMARK 3 7 3.2347 - 3.0727 0.98 2658 122 0.2112 0.2848 REMARK 3 8 3.0727 - 2.9390 0.98 2695 120 0.2219 0.2606 REMARK 3 9 2.9390 - 2.8259 0.98 2712 132 0.2199 0.3013 REMARK 3 10 2.8259 - 2.7284 0.98 2652 147 0.2316 0.2888 REMARK 3 11 2.7284 - 2.6431 0.98 2686 152 0.2404 0.3031 REMARK 3 12 2.6431 - 2.5676 0.98 2629 145 0.2401 0.3204 REMARK 3 13 2.5676 - 2.5000 0.98 2670 163 0.2373 0.2851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7971 REMARK 3 ANGLE : 0.653 10788 REMARK 3 CHIRALITY : 0.046 1184 REMARK 3 PLANARITY : 0.004 1394 REMARK 3 DIHEDRAL : 17.967 4739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ATD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2SHP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM PHOSPHATE, 20% (W/V) PEG REMARK 280 3350, PH 9.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 108.06750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 91 REMARK 465 ASN A 92 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 ASN A 161 REMARK 465 ASP A 162 REMARK 465 LEU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 GLN A 526 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 91 REMARK 465 ASN B 92 REMARK 465 ASP B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ASN B 161 REMARK 465 ASP B 162 REMARK 465 LEU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 465 THR B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 VAL B 243 REMARK 465 LYS B 244 REMARK 465 ASN B 298 REMARK 465 GLU B 299 REMARK 465 PHE B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 465 ASN B 320 REMARK 465 SER B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 465 GLN B 526 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 NE CZ NH1 NH2 REMARK 470 LYS A 55 CD CE NZ REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 HIS A 85 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 89 CD CE NZ REMARK 470 HIS A 116 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 131 CD CE NZ REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 GLU A 185 CD OE1 OE2 REMARK 470 LYS A 199 CD CE NZ REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 LYS A 213 CD CE NZ REMARK 470 GLU A 232 CD OE1 OE2 REMARK 470 LYS A 235 CE NZ REMARK 470 GLU A 249 CD OE1 OE2 REMARK 470 LYS A 266 CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 313 CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLN A 335 CD OE1 NE2 REMARK 470 LYS A 364 CD CE NZ REMARK 470 LYS A 366 CE NZ REMARK 470 LYS A 378 CE NZ REMARK 470 LYS A 405 CE NZ REMARK 470 ASN A 410 CG OD1 ND2 REMARK 470 ASP A 437 CG OD1 OD2 REMARK 470 GLU A 481 CD OE1 OE2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 LYS A 492 CE NZ REMARK 470 ARG A 512 NE CZ NH1 NH2 REMARK 470 GLU A 523 CD OE1 OE2 REMARK 470 ARG B 23 NE CZ NH1 NH2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ARG B 47 NE CZ NH1 NH2 REMARK 470 GLN B 57 CD OE1 NE2 REMARK 470 HIS B 85 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 89 CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 124 CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLN B 141 CG CD OE1 NE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 GLU B 232 CD OE1 OE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 GLU B 249 CD OE1 OE2 REMARK 470 LYS B 260 CE NZ REMARK 470 LYS B 266 CE NZ REMARK 470 LYS B 274 CE NZ REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 ASP B 294 CG OD1 OD2 REMARK 470 GLU B 313 CD OE1 OE2 REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 GLN B 335 CD OE1 NE2 REMARK 470 LYS B 364 CD CE NZ REMARK 470 LYS B 366 CE NZ REMARK 470 LYS B 405 CE NZ REMARK 470 HIS B 426 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 481 CD OE1 OE2 REMARK 470 LYS B 492 CE NZ REMARK 470 GLU B 523 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 279 O4 PO4 B 601 2.12 REMARK 500 O HOH B 778 O HOH B 780 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 4 10.76 58.18 REMARK 500 LEU A 262 55.39 -99.53 REMARK 500 ASP A 294 77.93 58.23 REMARK 500 ARG A 362 55.49 38.60 REMARK 500 LYS A 366 -108.38 -82.34 REMARK 500 TYR A 375 -2.47 71.22 REMARK 500 CYS A 459 139.54 109.36 REMARK 500 SER A 460 -137.96 67.56 REMARK 500 ILE A 463 -33.27 -135.82 REMARK 500 ASP A 485 73.00 -105.39 REMARK 500 VAL A 505 108.35 68.36 REMARK 500 ASP B 94 -159.22 -118.11 REMARK 500 LYS B 99 -51.31 -121.96 REMARK 500 LEU B 206 -2.95 84.90 REMARK 500 GLU B 225 32.43 -96.63 REMARK 500 LEU B 262 55.87 -94.65 REMARK 500 CYS B 367 110.54 -160.82 REMARK 500 CYS B 459 158.39 120.01 REMARK 500 SER B 460 -135.19 52.08 REMARK 500 ASP B 485 50.70 -96.84 REMARK 500 VAL B 505 106.72 67.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 603 DBREF 6ATD A 1 526 UNP Q06124 PTN11_HUMAN 1 526 DBREF 6ATD B 1 526 UNP Q06124 PTN11_HUMAN 1 526 SEQADV 6ATD GLY A -1 UNP Q06124 EXPRESSION TAG SEQADV 6ATD HIS A 0 UNP Q06124 EXPRESSION TAG SEQADV 6ATD ASP A 308 UNP Q06124 ASN 308 ENGINEERED MUTATION SEQADV 6ATD GLY B -1 UNP Q06124 EXPRESSION TAG SEQADV 6ATD HIS B 0 UNP Q06124 EXPRESSION TAG SEQADV 6ATD ASP B 308 UNP Q06124 ASN 308 ENGINEERED MUTATION SEQRES 1 A 528 GLY HIS MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE SEQRES 2 A 528 THR GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY SEQRES 3 A 528 VAL ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN SEQRES 4 A 528 PRO GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA SEQRES 5 A 528 VAL THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR SEQRES 6 A 528 ASP LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU SEQRES 7 A 528 LEU VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS SEQRES 8 A 528 GLU LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU SEQRES 9 A 528 ASN CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY SEQRES 10 A 528 HIS LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU SEQRES 11 A 528 LYS GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SEQRES 12 A 528 SER HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY SEQRES 13 A 528 ASP ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL SEQRES 14 A 528 THR HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP SEQRES 15 A 528 VAL GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU SEQRES 16 A 528 VAL GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU SEQRES 17 A 528 GLY THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR SEQRES 18 A 528 ARG ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU SEQRES 19 A 528 LEU SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN SEQRES 20 A 528 GLY PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU SEQRES 21 A 528 CYS LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN SEQRES 22 A 528 GLU ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO SEQRES 23 A 528 PHE ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO SEQRES 24 A 528 ASN GLU PRO VAL SER ASP TYR ILE ASN ALA ASP ILE ILE SEQRES 25 A 528 MET PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO SEQRES 26 A 528 LYS LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN SEQRES 27 A 528 THR VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SEQRES 28 A 528 SER ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG SEQRES 29 A 528 GLY LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR SEQRES 30 A 528 ALA LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL SEQRES 31 A 528 LYS GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU SEQRES 32 A 528 LYS LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR SEQRES 33 A 528 VAL TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY SEQRES 34 A 528 VAL PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU SEQRES 35 A 528 GLU VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY SEQRES 36 A 528 PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR SEQRES 37 A 528 GLY THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE SEQRES 38 A 528 ARG GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS SEQRES 39 A 528 THR ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL SEQRES 40 A 528 GLN THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL SEQRES 41 A 528 GLN HIS TYR ILE GLU THR LEU GLN SEQRES 1 B 528 GLY HIS MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE SEQRES 2 B 528 THR GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY SEQRES 3 B 528 VAL ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN SEQRES 4 B 528 PRO GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA SEQRES 5 B 528 VAL THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR SEQRES 6 B 528 ASP LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU SEQRES 7 B 528 LEU VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS SEQRES 8 B 528 GLU LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU SEQRES 9 B 528 ASN CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY SEQRES 10 B 528 HIS LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU SEQRES 11 B 528 LYS GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SEQRES 12 B 528 SER HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY SEQRES 13 B 528 ASP ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL SEQRES 14 B 528 THR HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP SEQRES 15 B 528 VAL GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU SEQRES 16 B 528 VAL GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU SEQRES 17 B 528 GLY THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR SEQRES 18 B 528 ARG ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU SEQRES 19 B 528 LEU SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN SEQRES 20 B 528 GLY PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU SEQRES 21 B 528 CYS LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN SEQRES 22 B 528 GLU ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO SEQRES 23 B 528 PHE ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO SEQRES 24 B 528 ASN GLU PRO VAL SER ASP TYR ILE ASN ALA ASP ILE ILE SEQRES 25 B 528 MET PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO SEQRES 26 B 528 LYS LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN SEQRES 27 B 528 THR VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SEQRES 28 B 528 SER ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG SEQRES 29 B 528 GLY LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR SEQRES 30 B 528 ALA LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL SEQRES 31 B 528 LYS GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU SEQRES 32 B 528 LYS LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR SEQRES 33 B 528 VAL TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY SEQRES 34 B 528 VAL PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU SEQRES 35 B 528 GLU VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY SEQRES 36 B 528 PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR SEQRES 37 B 528 GLY THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE SEQRES 38 B 528 ARG GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS SEQRES 39 B 528 THR ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL SEQRES 40 B 528 GLN THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL SEQRES 41 B 528 GLN HIS TYR ILE GLU THR LEU GLN HET PO4 A 601 5 HET PO4 B 601 5 HET PO4 B 602 5 HET PO4 B 603 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *180(H2 O) HELIX 1 AA1 THR A 12 ARG A 23 1 12 HELIX 2 AA2 THR A 73 HIS A 84 1 12 HELIX 3 AA3 SER A 118 LYS A 129 1 12 HELIX 4 AA4 SER A 189 ASN A 200 1 12 HELIX 5 AA5 GLU A 225 LYS A 235 1 11 HELIX 6 AA6 GLY A 246 GLN A 256 1 11 HELIX 7 AA7 GLN A 257 LEU A 261 5 5 HELIX 8 AA8 LYS A 266 ASN A 277 5 12 HELIX 9 AA9 THR A 337 ASN A 349 1 13 HELIX 10 AB1 PRO A 432 ILE A 449 1 18 HELIX 11 AB2 ILE A 463 GLY A 483 1 21 HELIX 12 AB3 ASP A 489 SER A 499 1 11 HELIX 13 AB4 THR A 507 THR A 524 1 18 HELIX 14 AB5 THR B 12 ARG B 23 1 12 HELIX 15 AB6 THR B 73 HIS B 84 1 12 HELIX 16 AB7 SER B 118 LYS B 129 1 12 HELIX 17 AB8 SER B 189 ASN B 200 1 12 HELIX 18 AB9 GLU B 225 SER B 234 1 10 HELIX 19 AC1 GLY B 246 GLN B 256 1 11 HELIX 20 AC2 GLN B 257 LEU B 262 5 6 HELIX 21 AC3 ARG B 265 ASN B 277 5 13 HELIX 22 AC4 THR B 337 GLU B 348 1 12 HELIX 23 AC5 PRO B 432 ILE B 449 1 18 HELIX 24 AC6 ILE B 463 GLY B 483 1 21 HELIX 25 AC7 ASP B 489 SER B 499 1 11 HELIX 26 AC8 THR B 507 GLU B 523 1 17 SHEET 1 AA1 6 LYS A 70 PHE A 71 0 SHEET 2 AA1 6 TYR A 63 LEU A 65 -1 N TYR A 63 O PHE A 71 SHEET 3 AA1 6 ALA A 50 GLN A 57 -1 N GLN A 57 O ASP A 64 SHEET 4 AA1 6 PHE A 41 ARG A 47 -1 N ARG A 47 O ALA A 50 SHEET 5 AA1 6 SER A 28 PRO A 33 -1 N ARG A 32 O THR A 42 SHEET 6 AA1 6 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 AA2 5 PHE A 113 GLY A 115 0 SHEET 2 AA2 5 SER A 134 GLU A 139 1 O GLU A 139 N GLY A 115 SHEET 3 AA2 5 PHE A 147 THR A 153 -1 O ARG A 152 N SER A 134 SHEET 4 AA2 5 LYS A 166 GLN A 175 -1 O ILE A 172 N PHE A 147 SHEET 5 AA2 5 LYS A 178 ASP A 180 -1 O LYS A 178 N GLN A 175 SHEET 1 AA3 3 PHE A 113 GLY A 115 0 SHEET 2 AA3 3 SER A 134 GLU A 139 1 O GLU A 139 N GLY A 115 SHEET 3 AA3 3 GLN A 214 PRO A 215 1 O GLN A 214 N PHE A 135 SHEET 1 AA4 2 MET A 202 VAL A 203 0 SHEET 2 AA4 2 VAL A 209 LEU A 210 -1 O LEU A 210 N MET A 202 SHEET 1 AA5 2 ILE A 221 ASN A 222 0 SHEET 2 AA5 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 AA6 8 ALA A 307 ILE A 310 0 SHEET 2 AA6 8 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 3 AA6 8 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 4 AA6 8 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 5 AA6 8 ARG A 413 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 6 AA6 8 TYR A 396 LYS A 405 -1 N LEU A 401 O VAL A 415 SHEET 7 AA6 8 MET A 383 ALA A 392 -1 N SER A 391 O LEU A 398 SHEET 8 AA6 8 LEU A 377 TYR A 380 -1 N TYR A 380 O MET A 383 SHEET 1 AA7 2 VAL A 360 GLU A 361 0 SHEET 2 AA7 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SHEET 1 AA8 6 LYS B 70 PHE B 71 0 SHEET 2 AA8 6 TYR B 63 LEU B 65 -1 N TYR B 63 O PHE B 71 SHEET 3 AA8 6 ALA B 50 GLN B 57 -1 N GLN B 57 O ASP B 64 SHEET 4 AA8 6 PHE B 41 ARG B 47 -1 N ARG B 47 O ALA B 50 SHEET 5 AA8 6 SER B 28 PRO B 33 -1 N SER B 28 O ARG B 46 SHEET 6 AA8 6 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA9 5 PHE B 113 HIS B 116 0 SHEET 2 AA9 5 SER B 134 GLU B 139 1 O VAL B 137 N HIS B 114 SHEET 3 AA9 5 PHE B 147 THR B 153 -1 O VAL B 148 N ARG B 138 SHEET 4 AA9 5 LYS B 166 GLN B 175 -1 O ILE B 172 N PHE B 147 SHEET 5 AA9 5 LYS B 178 ASP B 180 -1 O LYS B 178 N GLN B 175 SHEET 1 AB1 3 PHE B 113 HIS B 116 0 SHEET 2 AB1 3 SER B 134 GLU B 139 1 O VAL B 137 N HIS B 114 SHEET 3 AB1 3 GLN B 214 PRO B 215 1 O GLN B 214 N PHE B 135 SHEET 1 AB2 2 MET B 202 VAL B 203 0 SHEET 2 AB2 2 VAL B 209 LEU B 210 -1 O LEU B 210 N MET B 202 SHEET 1 AB3 2 ILE B 221 ASN B 222 0 SHEET 2 AB3 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 AB4 8 ALA B 307 ILE B 310 0 SHEET 2 AB4 8 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 3 AB4 8 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 4 AB4 8 VAL B 352 MET B 355 1 N VAL B 354 O VAL B 456 SHEET 5 AB4 8 ARG B 413 PHE B 420 1 O TYR B 418 N MET B 355 SHEET 6 AB4 8 TYR B 396 LYS B 405 -1 N LEU B 401 O VAL B 415 SHEET 7 AB4 8 MET B 383 ALA B 392 -1 N SER B 391 O LEU B 398 SHEET 8 AB4 8 LEU B 377 TYR B 380 -1 N TYR B 380 O MET B 383 SHEET 1 AB5 2 VAL B 360 GLU B 361 0 SHEET 2 AB5 2 LYS B 364 SER B 365 -1 O LYS B 364 N GLU B 361 SSBOND 1 CYS A 367 CYS A 459 1555 1555 2.04 SSBOND 2 CYS B 367 CYS B 459 1555 1555 2.05 SITE 1 AC1 5 ARG A 32 SER A 34 LYS A 35 SER A 36 SITE 2 AC1 5 THR A 42 SITE 1 AC2 8 ASP B 61 TYR B 62 ARG B 278 TYR B 279 SITE 2 AC2 8 SER B 365 LYS B 366 SER B 460 HOH B 767 SITE 1 AC3 5 ARG B 32 SER B 34 LYS B 35 SER B 36 SITE 2 AC3 5 THR B 42 SITE 1 AC4 4 ARG B 138 SER B 140 GLN B 141 VAL B 148 CRYST1 46.292 216.135 55.709 90.00 97.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021602 0.000000 0.002748 0.00000 SCALE2 0.000000 0.004627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018095 0.00000