HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-AUG-17 6AU0 TITLE CRYSTAL STRUCTURE OF PPK2 (CLASS III) IN COMPLEX WITH BISPHOSPHONATE TITLE 2 INHIBITOR (2-((3,5-DICHLOROPHENYL)AMINO)ETHANE-1,1-DIYL)DIPHOSPHONIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII (STRAIN ATCC 33406 / SOURCE 3 NCIMB 9469); SOURCE 4 ORGANISM_TAXID: 269798; SOURCE 5 STRAIN: ATCC 33406 / NCIMB 9469; SOURCE 6 GENE: CHU_0107; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PPK2, KINASE, BISPHOSPHONATE INHIBITOR, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.RUSZKOWSKI,A.JOACHIMIAK,L.BERLICKI,A.YAKUNIN REVDAT 3 13-MAR-24 6AU0 1 REMARK REVDAT 2 29-JUL-20 6AU0 1 JRNL REVDAT 1 16-JAN-19 6AU0 0 JRNL AUTH B.NOCEK,A.N.KHUSNUTDINOVA,M.RUSZKOWSKI,R.FLICK,M.BURDA, JRNL AUTH 2 K.BATYROVA,G.BROWN,A.MUCHA,A.JOACHIMIAK,L.BERLICKI, JRNL AUTH 3 A.F.YAKUNIN JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE SELECTIVITY AND ACTIVITY JRNL TITL 2 OF BACTERIAL POLYPHOSPHATE KINASES JRNL REF ACS CATALYSIS V. 8 10746 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.8B03151 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2451 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.818 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2558 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2463 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3455 ; 1.491 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5692 ; 0.931 ; 2.995 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;40.085 ;25.042 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;14.378 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;23.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2828 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 1.563 ; 3.143 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1216 ; 1.563 ; 3.143 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1523 ; 2.490 ; 4.704 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1524 ; 2.489 ; 4.704 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 2.381 ; 3.530 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1341 ; 2.376 ; 3.530 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1933 ; 3.882 ; 5.157 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2954 ; 7.345 ;26.170 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2955 ; 7.345 ;26.180 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1323 6.3500 1.5313 REMARK 3 T TENSOR REMARK 3 T11: 0.0958 T22: 0.4794 REMARK 3 T33: 0.1399 T12: -0.0271 REMARK 3 T13: 0.0463 T23: -0.0797 REMARK 3 L TENSOR REMARK 3 L11: 1.3603 L22: 1.1736 REMARK 3 L33: 1.8637 L12: 1.2168 REMARK 3 L13: 0.3766 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: 0.2581 S13: -0.2147 REMARK 3 S21: -0.0139 S22: 0.2079 S23: -0.1614 REMARK 3 S31: -0.3328 S32: 0.6292 S33: -0.1219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4028 6.4779 4.2144 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.3119 REMARK 3 T33: 0.2015 T12: 0.0665 REMARK 3 T13: 0.0098 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.0369 L22: 1.0420 REMARK 3 L33: 3.0972 L12: 0.1707 REMARK 3 L13: -0.0238 L23: 0.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.0385 S13: -0.0433 REMARK 3 S21: -0.0271 S22: -0.0308 S23: -0.0773 REMARK 3 S31: -0.1799 S32: -0.0127 S33: 0.0428 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1163 3.1989 5.9226 REMARK 3 T TENSOR REMARK 3 T11: 0.2013 T22: 0.2138 REMARK 3 T33: 0.2340 T12: 0.0592 REMARK 3 T13: 0.0378 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.5483 L22: 3.9566 REMARK 3 L33: 3.5511 L12: 2.9695 REMARK 3 L13: -3.5433 L23: -2.9224 REMARK 3 S TENSOR REMARK 3 S11: 0.2396 S12: -0.1568 S13: 0.1975 REMARK 3 S21: 0.0547 S22: -0.0951 S23: 0.3723 REMARK 3 S31: -0.1939 S32: 0.1640 S33: -0.1445 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9255 -4.8359 9.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.2673 REMARK 3 T33: 0.2268 T12: 0.0767 REMARK 3 T13: 0.0170 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.9143 L22: 1.0519 REMARK 3 L33: 1.5183 L12: 0.6737 REMARK 3 L13: -0.0063 L23: -0.9105 REMARK 3 S TENSOR REMARK 3 S11: 0.1294 S12: -0.1052 S13: 0.1791 REMARK 3 S21: 0.0451 S22: -0.0885 S23: 0.1156 REMARK 3 S31: 0.1015 S32: 0.0841 S33: -0.0409 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4013 -16.5197 20.7756 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.3866 REMARK 3 T33: 0.1238 T12: -0.0636 REMARK 3 T13: -0.0102 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 8.0820 L22: 0.6318 REMARK 3 L33: 3.0060 L12: 0.1203 REMARK 3 L13: 3.1530 L23: -0.9447 REMARK 3 S TENSOR REMARK 3 S11: 0.5031 S12: -0.8366 S13: -0.1389 REMARK 3 S21: 0.0402 S22: -0.2966 S23: 0.0724 REMARK 3 S31: 0.2005 S32: -0.0805 S33: -0.2065 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5100 -9.4938 5.3986 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.2879 REMARK 3 T33: 0.2560 T12: 0.1386 REMARK 3 T13: -0.0213 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.6623 L22: 0.6358 REMARK 3 L33: 0.5542 L12: 0.4923 REMARK 3 L13: 0.3653 L23: 0.4821 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: 0.0077 S13: -0.1047 REMARK 3 S21: 0.0163 S22: 0.0387 S23: -0.1597 REMARK 3 S31: 0.1571 S32: 0.2487 S33: -0.0851 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2501 14.6735 23.8334 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.3183 REMARK 3 T33: 0.0498 T12: -0.0089 REMARK 3 T13: -0.0644 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 5.2308 L22: 6.2914 REMARK 3 L33: 0.4194 L12: -2.9345 REMARK 3 L13: -0.8215 L23: 1.5791 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: -0.1871 S13: 0.0005 REMARK 3 S21: 0.3778 S22: 0.1180 S23: 0.0436 REMARK 3 S31: 0.0364 S32: 0.0872 S33: 0.0204 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1795 -3.1257 21.0995 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.3692 REMARK 3 T33: 0.1590 T12: 0.0728 REMARK 3 T13: -0.1453 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.3979 L22: 3.7507 REMARK 3 L33: 4.9138 L12: 0.0176 REMARK 3 L13: -0.8989 L23: 3.1077 REMARK 3 S TENSOR REMARK 3 S11: 0.1765 S12: -0.0527 S13: -0.1266 REMARK 3 S21: 0.2394 S22: -0.1736 S23: -0.1742 REMARK 3 S31: -0.0351 S32: -0.0149 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8425 3.9054 1.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.4268 REMARK 3 T33: 0.2205 T12: 0.0495 REMARK 3 T13: 0.0111 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.6648 L22: 0.4643 REMARK 3 L33: 1.5569 L12: 0.2359 REMARK 3 L13: 0.8639 L23: -0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.1882 S13: -0.0543 REMARK 3 S21: 0.0204 S22: 0.0092 S23: -0.1215 REMARK 3 S31: -0.0408 S32: 0.5137 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6923 17.3361 -30.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.5171 REMARK 3 T33: 0.1644 T12: 0.1323 REMARK 3 T13: 0.0518 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.8098 L22: 2.5672 REMARK 3 L33: 3.4721 L12: -1.1755 REMARK 3 L13: -0.2797 L23: -1.2783 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0757 S13: -0.2112 REMARK 3 S21: 0.2615 S22: 0.0386 S23: 0.3181 REMARK 3 S31: -0.8624 S32: -0.5100 S33: -0.0848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE CITRATE PH 4.2 40% PEG REMARK 280 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.67750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.86850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.93425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.67750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.80275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.80275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.67750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.93425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 54.67750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.86850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.67750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.86850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.67750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 134.80275 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.93425 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.67750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.93425 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 134.80275 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.67750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.67750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.86850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 302 REMARK 465 SER A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 616 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -62.49 -98.54 REMARK 500 SER A 64 22.48 -144.59 REMARK 500 THR A 66 -76.31 -119.04 REMARK 500 ARG A 133 153.16 69.42 REMARK 500 LEU A 140 -85.64 -130.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BWJ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 DBREF 6AU0 A 1 305 UNP Q11YW6 Q11YW6_CYTH3 1 305 SEQADV 6AU0 SER A -2 UNP Q11YW6 EXPRESSION TAG SEQADV 6AU0 ASN A -1 UNP Q11YW6 EXPRESSION TAG SEQADV 6AU0 ALA A 0 UNP Q11YW6 EXPRESSION TAG SEQRES 1 A 308 SER ASN ALA MET ALA THR ASP PHE SER LYS LEU SER LYS SEQRES 2 A 308 TYR VAL GLU THR LEU ARG VAL LYS PRO LYS GLN SER ILE SEQRES 3 A 308 ASP LEU LYS LYS ASP PHE ASP THR ASP TYR ASP HIS LYS SEQRES 4 A 308 MET LEU THR LYS GLU GLU GLY GLU GLU LEU LEU ASN LEU SEQRES 5 A 308 GLY ILE SER LYS LEU SER GLU ILE GLN GLU LYS LEU TYR SEQRES 6 A 308 ALA SER GLY THR LYS SER VAL LEU ILE VAL PHE GLN ALA SEQRES 7 A 308 MET ASP ALA ALA GLY LYS ASP GLY THR VAL LYS HIS ILE SEQRES 8 A 308 MET THR GLY LEU ASN PRO GLN GLY VAL LYS VAL THR SER SEQRES 9 A 308 PHE LYS VAL PRO SER LYS ILE GLU LEU SER HIS ASP TYR SEQRES 10 A 308 LEU TRP ARG HIS TYR VAL ALA LEU PRO ALA THR GLY GLU SEQRES 11 A 308 ILE GLY ILE PHE ASN ARG SER HIS TYR GLU ASN VAL LEU SEQRES 12 A 308 VAL THR ARG VAL HIS PRO GLU TYR LEU LEU SER GLU GLN SEQRES 13 A 308 THR SER GLY VAL THR ALA ILE GLU GLN VAL ASN GLN LYS SEQRES 14 A 308 PHE TRP ASP LYS ARG PHE GLN GLN ILE ASN ASN PHE GLU SEQRES 15 A 308 GLN HIS ILE SER GLU ASN GLY THR ILE VAL LEU LYS PHE SEQRES 16 A 308 PHE LEU HIS VAL SER LYS LYS GLU GLN LYS LYS ARG PHE SEQRES 17 A 308 ILE GLU ARG ILE GLU LEU ASP THR LYS ASN TRP LYS PHE SEQRES 18 A 308 SER THR GLY ASP LEU LYS GLU ARG ALA HIS TRP LYS ASP SEQRES 19 A 308 TYR ARG ASN ALA TYR GLU ASP MET LEU ALA ASN THR SER SEQRES 20 A 308 THR LYS GLN ALA PRO TRP PHE VAL ILE PRO ALA ASP ASP SEQRES 21 A 308 LYS TRP PHE THR ARG LEU LEU ILE ALA GLU ILE ILE CYS SEQRES 22 A 308 THR GLU LEU GLU LYS LEU ASN LEU THR PHE PRO THR VAL SEQRES 23 A 308 SER LEU GLU GLN LYS ALA GLU LEU GLU LYS ALA LYS ALA SEQRES 24 A 308 GLU LEU VAL ALA GLU LYS SER SER ASP HET BWJ A 401 18 HET GOL A 402 6 HET GOL A 403 6 HETNAM BWJ {[(3,5-DICHLOROPHENYL)AMINO]METHYLENE}BIS(PHOSPHONIC HETNAM 2 BWJ ACID) HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BWJ C7 H9 CL2 N O6 P2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *134(H2 O) HELIX 1 AA1 THR A 3 THR A 14 1 12 HELIX 2 AA2 THR A 39 GLY A 65 1 27 HELIX 3 AA3 GLY A 80 GLY A 91 1 12 HELIX 4 AA4 SER A 106 SER A 111 1 6 HELIX 5 AA5 LEU A 115 ALA A 121 1 7 HELIX 6 AA6 SER A 134 VAL A 139 5 6 HELIX 7 AA7 LEU A 140 HIS A 145 1 6 HELIX 8 AA8 PRO A 146 GLU A 152 5 7 HELIX 9 AA9 ALA A 159 VAL A 163 5 5 HELIX 10 AB1 ASN A 164 GLU A 184 1 21 HELIX 11 AB2 SER A 197 GLU A 210 1 14 HELIX 12 AB3 LYS A 214 PHE A 218 5 5 HELIX 13 AB4 SER A 219 ALA A 227 1 9 HELIX 14 AB5 HIS A 228 SER A 244 1 17 HELIX 15 AB6 ASP A 257 LYS A 275 1 19 HELIX 16 AB7 SER A 284 ALA A 300 1 17 SHEET 1 AA1 5 VAL A 97 SER A 101 0 SHEET 2 AA1 5 ILE A 128 ASN A 132 1 O ILE A 130 N LYS A 98 SHEET 3 AA1 5 SER A 68 ALA A 75 1 N VAL A 69 O GLY A 129 SHEET 4 AA1 5 THR A 187 HIS A 195 1 O PHE A 192 N VAL A 72 SHEET 5 AA1 5 TRP A 250 PRO A 254 1 O ILE A 253 N HIS A 195 SITE 1 AC1 12 ALA A 78 ALA A 79 GLY A 80 LYS A 81 SITE 2 AC1 12 ASP A 82 GLY A 83 ARG A 204 PHE A 205 SITE 3 AC1 12 ARG A 208 ASP A 222 HOH A 559 HOH A 561 SITE 1 AC2 7 HIS A 195 SER A 197 LYS A 198 TRP A 229 SITE 2 AC2 7 ARG A 233 HOH A 509 HOH A 544 SITE 1 AC3 7 TYR A 114 SER A 155 PHE A 167 ARG A 171 SITE 2 AC3 7 GLN A 174 GLU A 184 ASN A 185 CRYST1 109.355 109.355 179.737 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005564 0.00000