HEADER TRANSFERASE 30-AUG-17 6AU3 TITLE CRYSTAL STRUCTURE OF SETDB1 TUDOR DOMAIN WITH ARYL TRIAZOLE FRAGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN (UNP RESIDUES 196-402); COMPND 5 SYNONYM: ERG-ASSOCIATED PROTEIN WITH SET DOMAIN,ESET,HISTONE H3-K9 COMPND 6 METHYLTRANSFERASE 4,H3-K9-HMTASE 4,LYSINE N-METHYLTRANSFERASE 1E,SET COMPND 7 DOMAIN BIFURCATED 1; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETDB1, KIAA0067, KMT1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-MHL KEYWDS SETDB1 TUDOR, FRAGMENT HITS, EPIGENETICS, METHYLLYSINE READER, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MADER,R.MENDOZA-SANCHEZ,A.IQBAL,A.DONG,E.DOBROVETSKY,V.B.CORLESS, AUTHOR 2 S.K.LIEW,W.TEMPEL,D.SMIL,C.C.DELA SENA,S.KENNEDY,D.DIAZ,A.HOLOWNIA, AUTHOR 3 M.VEDADI,P.J.BROWN,V.SANTHAKUMAR,C.BOUNTRA,A.M.EDWARDS,A.K.YUDIN, AUTHOR 4 C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 13-MAR-24 6AU3 1 REMARK REVDAT 1 27-SEP-17 6AU3 0 JRNL AUTH P.MADER,R.MENDOZA-SANCHEZ,A.IQBAL,A.DONG,E.DOBROVETSKY, JRNL AUTH 2 V.B.CORLESS,S.K.LIEW,W.TEMPEL,D.SMIL,C.C.DELA SENA, JRNL AUTH 3 S.KENNEDY,D.DIAZ,A.HOLOWNIA,M.VEDADI,P.J.BROWN, JRNL AUTH 4 V.SANTHAKUMAR,C.BOUNTRA,A.M.EDWARDS,A.K.YUDIN, JRNL AUTH 5 C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF SETDB1 TUDOR DOMAIN WITH ARYL TRIAZOLE JRNL TITL 2 FRAGMENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 705 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1637 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1788 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1618 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2436 ; 1.473 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3739 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 6.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;29.802 ;22.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;11.757 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.591 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2031 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 396 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6AU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23527 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.94100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M LISO4, 0.1M BIS-TRIS REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.58600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.99350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.76400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.99350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.58600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.76400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 270 REMARK 465 GLY A 271 REMARK 465 ASN A 272 REMARK 465 GLN A 273 REMARK 465 SER A 400 REMARK 465 MET A 401 REMARK 465 LYS A 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 211 CE NZ REMARK 470 VAL A 224 CG1 CG2 REMARK 470 LYS A 229 NZ REMARK 470 LYS A 233 CE NZ REMARK 470 ASN A 236 CG OD1 ND2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 VAL A 274 CG1 CG2 REMARK 470 LYS A 288 CE NZ REMARK 470 LYS A 290 CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 ILE A 327 CG1 CD1 REMARK 470 GLU A 335 OE1 OE2 REMARK 470 GLU A 359 CD OE1 OE2 REMARK 470 LYS A 364 CD CE NZ REMARK 470 ARG A 376 NH1 NH2 REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 MET A 398 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 195 116.00 -160.45 REMARK 500 SER A 201 -6.11 88.92 REMARK 500 SER A 201 -4.59 88.92 REMARK 500 ASN A 236 -81.33 -98.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BWM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 DBREF 6AU3 A 196 402 UNP Q15047 SETB1_HUMAN 196 402 SEQADV 6AU3 GLU A 190 UNP Q15047 EXPRESSION TAG SEQADV 6AU3 ASN A 191 UNP Q15047 EXPRESSION TAG SEQADV 6AU3 LEU A 192 UNP Q15047 EXPRESSION TAG SEQADV 6AU3 TYR A 193 UNP Q15047 EXPRESSION TAG SEQADV 6AU3 PHE A 194 UNP Q15047 EXPRESSION TAG SEQADV 6AU3 GLN A 195 UNP Q15047 EXPRESSION TAG SEQRES 1 A 213 GLU ASN LEU TYR PHE GLN GLY ASP LEU ILE VAL SER MET SEQRES 2 A 213 ARG ILE LEU GLY LYS LYS ARG THR LYS THR TRP HIS LYS SEQRES 3 A 213 GLY THR LEU ILE ALA ILE GLN THR VAL GLY PRO GLY LYS SEQRES 4 A 213 LYS TYR LYS VAL LYS PHE ASP ASN LYS GLY LYS SER LEU SEQRES 5 A 213 LEU SER GLY ASN HIS ILE ALA TYR ASP TYR HIS PRO PRO SEQRES 6 A 213 ALA ASP LYS LEU TYR VAL GLY SER ARG VAL VAL ALA LYS SEQRES 7 A 213 TYR LYS ASP GLY ASN GLN VAL TRP LEU TYR ALA GLY ILE SEQRES 8 A 213 VAL ALA GLU THR PRO ASN VAL LYS ASN LYS LEU ARG PHE SEQRES 9 A 213 LEU ILE PHE PHE ASP ASP GLY TYR ALA SER TYR VAL THR SEQRES 10 A 213 GLN SER GLU LEU TYR PRO ILE CYS ARG PRO LEU LYS LYS SEQRES 11 A 213 THR TRP GLU ASP ILE GLU ASP ILE SER CYS ARG ASP PHE SEQRES 12 A 213 ILE GLU GLU TYR VAL THR ALA TYR PRO ASN ARG PRO MET SEQRES 13 A 213 VAL LEU LEU LYS SER GLY GLN LEU ILE LYS THR GLU TRP SEQRES 14 A 213 GLU GLY THR TRP TRP LYS SER ARG VAL GLU GLU VAL ASP SEQRES 15 A 213 GLY SER LEU VAL ARG ILE LEU PHE LEU ASP ASP LYS ARG SEQRES 16 A 213 CYS GLU TRP ILE TYR ARG GLY SER THR ARG LEU GLU PRO SEQRES 17 A 213 MET PHE SER MET LYS HET BWM A 501 18 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET EDO A 506 4 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HETNAM BWM N-{[2-(3,5-DIMETHYL-4H-1,2,4-TRIAZOL-4-YL) HETNAM 2 BWM PHENYL]METHYL}ACETAMIDE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BWM C13 H16 N4 O FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 UNX 7(X) FORMUL 15 HOH *116(H2 O) HELIX 1 AA1 SER A 243 ASN A 245 5 3 HELIX 2 AA2 PRO A 254 LEU A 258 5 5 HELIX 3 AA3 THR A 306 SER A 308 5 3 HELIX 4 AA4 LYS A 319 ILE A 324 5 6 HELIX 5 AA5 ASP A 326 TYR A 340 1 15 SHEET 1 AA1 4 ASN A 191 LEU A 192 0 SHEET 2 AA1 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA1 4 GLY A 227 PHE A 234 -1 O LYS A 229 N GLN A 222 SHEET 4 AA1 4 LYS A 239 LEU A 242 -1 O LEU A 242 N TYR A 230 SHEET 1 AA2 4 ASN A 191 LEU A 192 0 SHEET 2 AA2 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA2 4 ARG A 203 LYS A 207 -1 N ILE A 204 O GLY A 216 SHEET 4 AA2 4 ILE A 247 TYR A 249 -1 O ALA A 248 N LEU A 205 SHEET 1 AA3 2 PHE A 194 GLN A 195 0 SHEET 2 AA3 2 LEU A 198 ILE A 199 -1 O LEU A 198 N GLN A 195 SHEET 1 AA4 5 ALA A 302 VAL A 305 0 SHEET 2 AA4 5 PHE A 293 PHE A 297 -1 N ILE A 295 O SER A 303 SHEET 3 AA4 5 TRP A 275 GLU A 283 -1 N ALA A 282 O LEU A 294 SHEET 4 AA4 5 ARG A 263 TYR A 268 -1 N ALA A 266 O TYR A 277 SHEET 5 AA4 5 LEU A 310 PRO A 312 -1 O TYR A 311 N VAL A 265 SHEET 1 AA5 5 ARG A 384 TYR A 389 0 SHEET 2 AA5 5 LEU A 374 PHE A 379 -1 N VAL A 375 O ILE A 388 SHEET 3 AA5 5 THR A 361 ASP A 371 -1 N GLU A 368 O ARG A 376 SHEET 4 AA5 5 LEU A 353 TRP A 358 -1 N ILE A 354 O SER A 365 SHEET 5 AA5 5 LEU A 395 GLU A 396 -1 O GLU A 396 N LYS A 355 CISPEP 1 TYR A 340 PRO A 341 0 9.10 SITE 1 AC1 7 GLY A 300 PHE A 332 TRP A 387 ILE A 388 SITE 2 AC1 7 TYR A 389 SER A 392 ARG A 394 SITE 1 AC2 5 ARG A 209 TRP A 363 LYS A 364 ASP A 381 SITE 2 AC2 5 HOH A 627 SITE 1 AC3 6 LEU A 242 SER A 243 HIS A 246 HOH A 608 SITE 2 AC3 6 HOH A 617 HOH A 626 SITE 1 AC4 5 HIS A 214 LYS A 215 HOH A 609 HOH A 622 SITE 2 AC4 5 HOH A 671 SITE 1 AC5 4 ARG A 203 LYS A 215 ASP A 250 LYS A 383 SITE 1 AC6 6 TYR A 193 SER A 262 THR A 320 HOH A 602 SITE 2 AC6 6 HOH A 632 HOH A 658 CRYST1 55.172 63.528 69.987 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014288 0.00000