HEADER HYDROLASE 31-AUG-17 6AUF TITLE CRYSTAL STRUCTURE OF METALO BETA LACTAMASES MIM-1 FROM NOVOSPHINGOBIUM TITLE 2 PENTAROMATIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE-LIKE PROTEIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM PENTAROMATIVORANS US6-1; SOURCE 3 ORGANISM_TAXID: 1088721; SOURCE 4 GENE: NSU_3853; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 042; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 216592 KEYWDS METALLOHYDROLASE, LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SELLECK REVDAT 2 30-OCT-24 6AUF 1 REMARK REVDAT 1 12-SEP-18 6AUF 0 JRNL AUTH C.SELLECK JRNL TITL CRYSTAL STRUCTURE OF METALO BETA LACTAMASES MIM-1 FROM JRNL TITL 2 NOVOSPHINGOBIUM PENTAROMATIVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9834 - 5.9485 1.00 1373 153 0.1744 0.1984 REMARK 3 2 5.9485 - 4.7256 1.00 1266 141 0.1430 0.1695 REMARK 3 3 4.7256 - 4.1294 1.00 1246 139 0.1273 0.1702 REMARK 3 4 4.1294 - 3.7524 1.00 1240 137 0.1602 0.2088 REMARK 3 5 3.7524 - 3.4837 1.00 1219 136 0.1719 0.2318 REMARK 3 6 3.4837 - 3.2785 1.00 1214 135 0.1978 0.2683 REMARK 3 7 3.2785 - 3.1144 1.00 1189 132 0.2155 0.2752 REMARK 3 8 3.1144 - 2.9789 1.00 1217 135 0.2224 0.2930 REMARK 3 9 2.9789 - 2.8643 1.00 1200 133 0.2015 0.2641 REMARK 3 10 2.8643 - 2.7655 1.00 1204 135 0.2244 0.2942 REMARK 3 11 2.7655 - 2.6791 1.00 1194 133 0.2212 0.2971 REMARK 3 12 2.6791 - 2.6025 0.99 1185 130 0.2367 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2098 REMARK 3 ANGLE : 0.860 2872 REMARK 3 CHIRALITY : 0.050 322 REMARK 3 PLANARITY : 0.006 380 REMARK 3 DIHEDRAL : 19.688 1252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8997 26.7772 37.8613 REMARK 3 T TENSOR REMARK 3 T11: 1.4680 T22: 1.1122 REMARK 3 T33: 0.7060 T12: -0.1684 REMARK 3 T13: -0.0195 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 2.2440 L22: 6.4306 REMARK 3 L33: 4.4451 L12: 0.7904 REMARK 3 L13: -1.3081 L23: 3.5278 REMARK 3 S TENSOR REMARK 3 S11: 0.9261 S12: -1.2576 S13: 0.0269 REMARK 3 S21: -0.0262 S22: -0.5731 S23: 0.0528 REMARK 3 S31: -0.3572 S32: -0.6804 S33: -0.4390 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2443 16.1426 27.8390 REMARK 3 T TENSOR REMARK 3 T11: 1.0167 T22: 0.7019 REMARK 3 T33: 0.5621 T12: 0.1573 REMARK 3 T13: -0.2290 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.3022 L22: 2.2914 REMARK 3 L33: 2.8553 L12: -0.4707 REMARK 3 L13: -0.2003 L23: -0.4258 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: -0.7073 S13: -0.1289 REMARK 3 S21: 1.0770 S22: 0.1823 S23: -0.4174 REMARK 3 S31: 0.5723 S32: 0.7929 S33: -0.0461 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8060 19.5475 12.0405 REMARK 3 T TENSOR REMARK 3 T11: 0.4921 T22: 0.6424 REMARK 3 T33: 0.5688 T12: 0.1326 REMARK 3 T13: -0.0549 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 4.3248 L22: 1.7347 REMARK 3 L33: 4.2538 L12: -1.1894 REMARK 3 L13: 2.4665 L23: -1.8484 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.3493 S13: -0.1960 REMARK 3 S21: 0.0415 S22: 0.0030 S23: -1.0451 REMARK 3 S31: 0.1952 S32: 1.1423 S33: 0.0493 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5585 10.4602 18.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.8994 T22: 0.4091 REMARK 3 T33: 0.5163 T12: 0.0127 REMARK 3 T13: -0.0029 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.9403 L22: 2.3420 REMARK 3 L33: 2.8179 L12: 0.4889 REMARK 3 L13: -0.4061 L23: 0.2211 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.2629 S13: -0.4808 REMARK 3 S21: 0.8361 S22: -0.2719 S23: -0.1932 REMARK 3 S31: 0.8968 S32: 0.0112 S33: 0.3154 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9565 27.8764 14.2667 REMARK 3 T TENSOR REMARK 3 T11: 0.6706 T22: 0.4008 REMARK 3 T33: 0.5451 T12: 0.0885 REMARK 3 T13: 0.0647 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 2.5361 L22: 2.8643 REMARK 3 L33: 3.5799 L12: 0.5730 REMARK 3 L13: -0.7855 L23: -1.1679 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 0.0492 S13: 0.2859 REMARK 3 S21: 0.6123 S22: 0.1334 S23: 0.1884 REMARK 3 S31: -0.3903 S32: -0.1821 S33: -0.2748 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PHENIX REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CITRATE, PH 5, 0.05 M BIS TRIS REMARK 280 PROPANE, PH 9.7, AND 16% W/V PEG-3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.33500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.98050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.98050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.16750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.98050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.98050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.50250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.98050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.98050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.16750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.98050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.98050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 162.50250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 531 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 LEU B 17 REMARK 465 GLU B 18 REMARK 465 VAL B 19 REMARK 465 LEU B 20 REMARK 465 PHE B 21 REMARK 465 GLN B 22 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 ARG B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 LYS B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 GLN B 306 REMARK 465 GLU B 307 REMARK 465 PHE B 308 REMARK 465 PRO B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 127 O HOH B 501 2.08 REMARK 500 O LEU B 256 NH2 ARG B 269 2.13 REMARK 500 NH2 ARG B 100 O HOH B 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 591 O HOH B 597 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 35 131.26 75.56 REMARK 500 ILE B 58 -60.12 -90.35 REMARK 500 TYR B 59 139.69 -174.45 REMARK 500 ASP B 85 144.39 78.42 REMARK 500 PRO B 88 174.73 -57.47 REMARK 500 PRO B 192 45.65 -83.39 REMARK 500 CYS B 253 73.72 -155.24 REMARK 500 ASN B 278 88.79 -159.41 REMARK 500 ALA B 279 -7.88 -58.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 599 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 600 DISTANCE = 8.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 93.0 REMARK 620 3 HIS B 194 NE2 99.2 103.2 REMARK 620 4 CIT B 403 O7 153.3 109.0 90.5 REMARK 620 5 CIT B 403 O5 98.5 122.8 129.3 57.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 HIS B 121 NE2 83.3 REMARK 620 3 HIS B 260 NE2 114.5 105.5 REMARK 620 4 CIT B 403 O2 146.1 111.1 91.7 REMARK 620 5 CIT B 403 O5 67.1 108.1 146.3 79.2 REMARK 620 6 CIT B 403 O6 66.7 149.3 82.5 98.0 67.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 403 DBREF 6AUF B 25 306 UNP G6EHN2 G6EHN2_9SPHN 25 306 SEQADV 6AUF MET B 10 UNP G6EHN2 INITIATING METHIONINE SEQADV 6AUF HIS B 11 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF HIS B 12 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF HIS B 13 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF HIS B 14 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF HIS B 15 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF HIS B 16 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF LEU B 17 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF GLU B 18 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF VAL B 19 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF LEU B 20 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF PHE B 21 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF GLN B 22 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF GLY B 23 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF PRO B 24 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF GLU B 307 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF PHE B 308 UNP G6EHN2 EXPRESSION TAG SEQADV 6AUF PRO B 309 UNP G6EHN2 EXPRESSION TAG SEQRES 1 B 300 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 B 300 GLY PRO ARG ASP SER ALA ALA LYS ALA ALA PRO THR THR SEQRES 3 B 300 LEU ALA THR ALA CYS LYS GLY LEU ASP GLY ARG GLU GLY SEQRES 4 B 300 TRP SER HIS PRO ALA PRO PRO ALA HIS ILE TYR GLY ASN SEQRES 5 B 300 THR TRP TYR VAL GLY THR CYS GLY ILE ALA SER ILE LEU SEQRES 6 B 300 VAL THR SER ASP ASP GLY HIS VAL LEU ILE ASP SER GLY SEQRES 7 B 300 PRO ALA ASP ALA ALA PRO LEU VAL LEU ALA ASN ILE ARG SEQRES 8 B 300 LYS LEU GLY PHE ASP PRO ALA ASP VAL ARG TRP ILE LEU SEQRES 9 B 300 THR SER HIS GLU HIS HIS ASP HIS ALA GLY SER ILE ALA SEQRES 10 B 300 GLU LEU GLN LYS ALA THR GLY ALA GLN ILE ALA ALA VAL SEQRES 11 B 300 ALA SER ALA ARG GLN VAL LEU GLU SER GLY LYS PRO SER SEQRES 12 B 300 ALA ASP ASP PRO GLN SER GLY LEU ILE GLU GLY PHE PRO SEQRES 13 B 300 PRO VAL HIS VAL ALA ARG VAL LEU VAL ASP GLY ASP SER SEQRES 14 B 300 VAL THR LEU GLY ARG LEU ALA LEU THR VAL ARG GLU THR SEQRES 15 B 300 PRO ALA HIS SER PRO GLY SER ALA SER TRP THR TRP GLN SEQRES 16 B 300 ALA CYS ASP GLU ALA PHE THR CYS ARG MET ILE ALA TYR SEQRES 17 B 300 ALA ASP SER ALA THR THR ILE SER ALA ASP ASP TYR ARG SEQRES 18 B 300 PHE SER ASP HIS PRO ASP ARG ILE ALA ARG ILE ARG THR SEQRES 19 B 300 GLY LEU SER ARG ILE ALA GLN LEU PRO CYS ASP ILE LEU SEQRES 20 B 300 VAL THR PRO HIS PRO SER ALA SER ASN LEU PHE ASP ARG SEQRES 21 B 300 LEU SER GLY LYS ALA PRO LEU VAL ASN ALA GLN ALA CYS SEQRES 22 B 300 ALA ALA TYR SER GLN ALA ALA GLY SER TYR PHE ALA LYS SEQRES 23 B 300 ARG LEU ALA GLU GLU ALA GLY GLU ALA ALA GLN GLU PHE SEQRES 24 B 300 PRO HET ZN B 401 1 HET ZN B 402 1 HET CIT B 403 18 HETNAM ZN ZINC ION HETNAM CIT CITRIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *100(H2 O) HELIX 1 AA1 THR B 35 CYS B 40 1 6 HELIX 2 AA2 GLY B 45 TRP B 49 5 5 HELIX 3 AA3 ALA B 91 LYS B 101 1 11 HELIX 4 AA4 ASP B 105 ALA B 107 5 3 HELIX 5 AA5 HIS B 118 GLY B 123 1 6 HELIX 6 AA6 SER B 124 ALA B 131 1 8 HELIX 7 AA7 ALA B 140 GLY B 149 1 10 HELIX 8 AA8 ARG B 230 ASP B 233 5 4 HELIX 9 AA9 HIS B 234 LEU B 251 1 18 HELIX 10 AB1 HIS B 260 SER B 264 5 5 HELIX 11 AB2 ASN B 265 SER B 271 1 7 HELIX 12 AB3 GLN B 280 GLY B 302 1 23 SHEET 1 AA1 7 ALA B 56 TYR B 59 0 SHEET 2 AA1 7 THR B 62 TYR B 64 -1 O THR B 62 N TYR B 59 SHEET 3 AA1 7 ILE B 73 VAL B 75 -1 O LEU B 74 N TRP B 63 SHEET 4 AA1 7 HIS B 81 ILE B 84 -1 O VAL B 82 N VAL B 75 SHEET 5 AA1 7 VAL B 109 LEU B 113 1 O LEU B 113 N LEU B 83 SHEET 6 AA1 7 GLN B 135 VAL B 139 1 O GLN B 135 N ARG B 110 SHEET 7 AA1 7 ARG B 171 LEU B 173 1 O LEU B 173 N ALA B 138 SHEET 1 AA2 5 SER B 178 LEU B 181 0 SHEET 2 AA2 5 LEU B 184 GLU B 190 -1 O LEU B 186 N VAL B 179 SHEET 3 AA2 5 ALA B 199 CYS B 206 -1 O THR B 202 N THR B 187 SHEET 4 AA2 5 CYS B 212 TYR B 217 -1 O ARG B 213 N ALA B 205 SHEET 5 AA2 5 ILE B 255 VAL B 257 1 O VAL B 257 N ALA B 216 SSBOND 1 CYS B 40 CYS B 68 1555 1555 2.04 SSBOND 2 CYS B 206 CYS B 212 1555 1555 2.03 SSBOND 3 CYS B 253 CYS B 282 1555 1555 2.07 LINK NE2 HIS B 116 ZN ZN B 402 1555 1555 2.09 LINK ND1 HIS B 118 ZN ZN B 402 1555 1555 1.91 LINK OD2 ASP B 120 ZN ZN B 401 1555 1555 2.34 LINK NE2 HIS B 121 ZN ZN B 401 1555 1555 1.97 LINK NE2 HIS B 194 ZN ZN B 402 1555 1555 2.08 LINK NE2 HIS B 260 ZN ZN B 401 1555 1555 2.00 LINK ZN ZN B 401 O2 CIT B 403 1555 1555 2.18 LINK ZN ZN B 401 O5 CIT B 403 1555 1555 1.88 LINK ZN ZN B 401 O6 CIT B 403 1555 1555 2.09 LINK ZN ZN B 402 O7 CIT B 403 1555 1555 2.70 LINK ZN ZN B 402 O5 CIT B 403 1555 1555 2.58 CISPEP 1 SER B 158 GLY B 159 0 -2.54 SITE 1 AC1 4 ASP B 120 HIS B 121 HIS B 260 CIT B 403 SITE 1 AC2 4 HIS B 116 HIS B 118 HIS B 194 CIT B 403 SITE 1 AC3 16 ARG B 46 TRP B 49 HIS B 116 ASP B 120 SITE 2 AC3 16 HIS B 121 GLN B 157 ILE B 161 HIS B 194 SITE 3 AC3 16 PHE B 210 SER B 220 THR B 222 HIS B 260 SITE 4 AC3 16 ZN B 401 ZN B 402 HOH B 524 HOH B 552 CRYST1 67.961 67.961 216.670 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014714 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004615 0.00000