HEADER VIRAL PROTEIN 07-SEP-17 6AYA TITLE STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN IN COMPLEX TITLE 2 WITH NUP153 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: 153 KDA NUCLEOPORIN,NUCLEOPORIN NUP153; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS HIV-1 CAPSID PROTEIN, HEXAMER, NUP153 COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.GRES,K.A.KIRBY,S.G.SARAFIANOS REVDAT 4 04-OCT-23 6AYA 1 JRNL REVDAT 3 11-DEC-19 6AYA 1 REMARK REVDAT 2 20-FEB-19 6AYA 1 REMARK REVDAT 1 12-SEP-18 6AYA 0 JRNL AUTH A.T.GRES,K.A.KIRBY,W.M.MCFADDEN,H.DU,D.LIU,C.XU,A.J.BRYER, JRNL AUTH 2 J.R.PERILLA,J.SHI,C.AIKEN,X.FU,P.ZHANG,A.C.FRANCIS, JRNL AUTH 3 G.B.MELIKYAN,S.G.SARAFIANOS JRNL TITL MULTIDISCIPLINARY STUDIES WITH MUTATED HIV-1 CAPSID PROTEINS JRNL TITL 2 REVEAL STRUCTURAL MECHANISMS OF LATTICE STABILIZATION. JRNL REF NAT COMMUN V. 14 5614 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37699872 JRNL DOI 10.1038/S41467-023-41197-7 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 10924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.770 REMARK 3 FREE R VALUE TEST SET COUNT : 630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2449 - 3.8089 0.95 2558 165 0.1996 0.2276 REMARK 3 2 3.8089 - 3.0237 0.93 2465 158 0.2543 0.3092 REMARK 3 3 3.0237 - 2.6416 1.00 2634 158 0.2885 0.3355 REMARK 3 4 2.6416 - 2.4002 1.00 2637 149 0.2927 0.3548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1784 REMARK 3 ANGLE : 0.508 2425 REMARK 3 CHIRALITY : 0.040 271 REMARK 3 PLANARITY : 0.005 314 REMARK 3 DIHEDRAL : 11.515 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4984 -12.4067 15.0075 REMARK 3 T TENSOR REMARK 3 T11: 0.8081 T22: 0.4158 REMARK 3 T33: 0.1764 T12: 0.0083 REMARK 3 T13: 0.2145 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 0.3376 L22: 1.3479 REMARK 3 L33: 2.5046 L12: -0.6503 REMARK 3 L13: 0.4715 L23: -0.6206 REMARK 3 S TENSOR REMARK 3 S11: 0.7399 S12: 0.2128 S13: 0.2065 REMARK 3 S21: -0.4655 S22: 0.5906 S23: 0.2635 REMARK 3 S31: 0.1033 S32: -0.1549 S33: 0.8632 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7214 -17.0698 -3.2978 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.3663 REMARK 3 T33: 0.5284 T12: 0.0013 REMARK 3 T13: 0.0149 T23: 0.0916 REMARK 3 L TENSOR REMARK 3 L11: 0.2999 L22: 0.2232 REMARK 3 L33: 0.4512 L12: 0.2985 REMARK 3 L13: 0.0841 L23: 0.1831 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.3202 S13: 0.1512 REMARK 3 S21: -0.2280 S22: -0.3491 S23: -0.4112 REMARK 3 S31: -0.2923 S32: 0.4089 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5289 -29.6045 3.7124 REMARK 3 T TENSOR REMARK 3 T11: 0.3808 T22: 0.2456 REMARK 3 T33: 0.4443 T12: -0.0213 REMARK 3 T13: 0.0635 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 0.2070 L22: 1.4298 REMARK 3 L33: 0.8839 L12: -0.8409 REMARK 3 L13: -0.3636 L23: 0.5774 REMARK 3 S TENSOR REMARK 3 S11: -0.2862 S12: 0.0793 S13: -0.3317 REMARK 3 S21: 0.1374 S22: 0.0823 S23: 0.5503 REMARK 3 S31: 0.0340 S32: 0.1822 S33: -0.0272 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4279 -33.8598 22.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.8863 T22: 0.2319 REMARK 3 T33: 0.3971 T12: -0.0675 REMARK 3 T13: 0.2524 T23: 0.2946 REMARK 3 L TENSOR REMARK 3 L11: 3.2524 L22: -0.0345 REMARK 3 L33: 1.7110 L12: -0.0279 REMARK 3 L13: 2.3266 L23: -0.0950 REMARK 3 S TENSOR REMARK 3 S11: -0.4715 S12: -1.4352 S13: 0.4636 REMARK 3 S21: 0.3013 S22: -0.2467 S23: -0.5252 REMARK 3 S31: -0.5098 S32: -0.3870 S33: -0.4786 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4051 -27.7209 2.6619 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.2547 REMARK 3 T33: 0.3473 T12: 0.0512 REMARK 3 T13: 0.0932 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.5103 L22: 2.8784 REMARK 3 L33: 2.0504 L12: -0.4154 REMARK 3 L13: -0.8836 L23: -1.0575 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.3100 S13: -0.4125 REMARK 3 S21: 0.4485 S22: 0.0165 S23: 0.7208 REMARK 3 S31: -0.1387 S32: -0.4634 S33: 0.0774 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5438 -29.8838 -9.8834 REMARK 3 T TENSOR REMARK 3 T11: 0.4910 T22: 0.4253 REMARK 3 T33: 0.3528 T12: 0.1925 REMARK 3 T13: -0.0017 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 0.6921 L22: 0.5405 REMARK 3 L33: 0.4967 L12: 0.4996 REMARK 3 L13: 0.5217 L23: 0.5258 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.1169 S13: 0.3492 REMARK 3 S21: -0.3048 S22: 0.0384 S23: -0.2768 REMARK 3 S31: 0.2731 S32: 0.2569 S33: -0.0016 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8591 -25.6943 -14.3873 REMARK 3 T TENSOR REMARK 3 T11: 0.3874 T22: 1.1700 REMARK 3 T33: 0.5959 T12: 0.2196 REMARK 3 T13: -0.1035 T23: -0.0928 REMARK 3 L TENSOR REMARK 3 L11: 0.5174 L22: 1.3809 REMARK 3 L33: 2.6878 L12: 0.6860 REMARK 3 L13: 0.1918 L23: 0.2352 REMARK 3 S TENSOR REMARK 3 S11: -0.7725 S12: -0.2955 S13: 0.3771 REMARK 3 S21: -0.1523 S22: 0.2288 S23: -0.0080 REMARK 3 S31: 1.4031 S32: 1.9610 S33: -0.0578 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1410 THROUGH 1418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3441 -26.7300 1.0094 REMARK 3 T TENSOR REMARK 3 T11: 0.7102 T22: 1.3261 REMARK 3 T33: 0.6068 T12: -0.0149 REMARK 3 T13: 0.0814 T23: -0.2360 REMARK 3 L TENSOR REMARK 3 L11: 0.3579 L22: 0.2339 REMARK 3 L33: 0.0903 L12: 0.2313 REMARK 3 L13: -0.1886 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 0.1628 S13: -0.3810 REMARK 3 S21: 0.2341 S22: -0.0238 S23: 0.0395 REMARK 3 S31: -0.4288 S32: -0.8238 S33: 0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000031 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS 0.5.32 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.241 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 4XFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NAI, MIB, GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -268.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 465 THR B 1407 REMARK 465 ASN B 1408 REMARK 465 ASN B 1409 REMARK 465 ALA B 1419 REMARK 465 ASN B 1420 REMARK 465 SER B 1421 REMARK 465 SER B 1422 REMARK 465 THR B 1423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -116.33 54.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFX RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN REMARK 900 RELATED ID: 6AY9 RELATED DB: PDB REMARK 900 NATIVE HIV-1 CAPSID PROTEIN IN COMPLEX WITH CPSF6 DBREF 6AYA A 1 231 UNP P12493 GAG_HV1N5 133 363 DBREF 6AYA B 1407 1423 UNP P49790 NU153_HUMAN 1407 1423 SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 B 17 THR ASN ASN SER PRO SER GLY VAL PHE THR PHE GLY ALA SEQRES 2 B 17 ASN SER SER THR HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET CL A 308 1 HET CL A 309 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 3 IOD 7(I 1-) FORMUL 10 CL 2(CL 1-) FORMUL 12 HOH *55(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 LEU A 43 1 9 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 HIS A 120 1 11 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLN A 176 1 17 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 VAL A 3 0 SHEET 2 AA1 2 VAL A 11 HIS A 12 -1 O VAL A 11 N VAL A 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.04 CISPEP 1 ASN A 121 PRO A 122 0 0.30 SITE 1 AC1 2 GLN A 95 LYS A 158 SITE 1 AC2 1 ARG A 162 SITE 1 AC3 1 ARG A 18 SITE 1 AC4 1 LYS A 182 SITE 1 AC5 1 PRO A 17 SITE 1 AC6 2 PHE A 161 ARG A 162 SITE 1 AC7 4 PRO A 93 ILE A 153 ARG A 167 HOH A 449 CRYST1 92.544 92.544 58.288 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010806 0.006239 0.000000 0.00000 SCALE2 0.000000 0.012477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017156 0.00000