data_6AZ4 # _entry.id 6AZ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6AZ4 pdb_00006az4 10.2210/pdb6az4/pdb WWPDB D_1000230021 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6AZ4 _pdbx_database_status.recvd_initial_deposition_date 2017-09-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Szostak, J.W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 140 _citation.language ? _citation.page_first 2829 _citation.page_last 2840 _citation.title 'Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.7b11750 _citation.pdbx_database_id_PubMed 29411978 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Zhou, L.' 3 ? primary 'Oh, S.S.' 4 ? primary 'Wang, J.' 5 ? primary 'Szostak, J.W.' 6 ? # _cell.entry_id 6AZ4 _cell.length_a 79.388 _cell.length_b 79.388 _cell.length_c 73.652 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AZ4 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (32-MER)' 10257.117 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*AP*GP*CP*AP*GP*CP*AP*G)-3') ; 2893.823 1 ? ? ? ? 3 non-polymer syn "DIGUANOSINE-5'-TRIPHOSPHATE" 788.406 1 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CUGCUGCUGCCGCUAAGGAUGAAAGUCUAUGC CUGCUGCUGCCGCUAAGGAUGAAAGUCUAUGC A ? 2 polyribonucleotide no no CAGCAGCAG CAGCAGCAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 C n 1 5 U n 1 6 G n 1 7 C n 1 8 U n 1 9 G n 1 10 C n 1 11 C n 1 12 G n 1 13 C n 1 14 U n 1 15 A n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 G n 1 22 A n 1 23 A n 1 24 A n 1 25 G n 1 26 U n 1 27 C n 1 28 U n 1 29 A n 1 30 U n 1 31 G n 1 32 C n 2 1 C n 2 2 A n 2 3 G n 2 4 C n 2 5 A n 2 6 G n 2 7 C n 2 8 A n 2 9 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 32 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6AZ4 6AZ4 ? 1 ? 1 2 PDB 6AZ4 6AZ4 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6AZ4 A 1 ? 32 ? 6AZ4 1 ? 32 ? 1 32 2 2 6AZ4 B 1 ? 9 ? 6AZ4 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GP3 non-polymer . "DIGUANOSINE-5'-TRIPHOSPHATE" ? 'C20 H27 N10 O18 P3' 788.406 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6AZ4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.3 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 71.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M Magnesium chloride, 0.1 M Sodium cacodylate trihydrate pH 6.5, 1.4 M Sodium acetate trihydrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6AZ4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.98 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4712 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.5 _reflns.pdbx_Rmerge_I_obs 0.133 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.24 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.900 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.98 _reflns_shell.d_res_low 3.09 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.64 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 476 _reflns_shell.percent_possible_all 95.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.698 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.591 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.978 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6AZ4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4464 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.98 _refine.ls_percent_reflns_obs 91.53 _refine.ls_R_factor_obs 0.18206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18053 _refine.ls_R_factor_R_free 0.2325 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 247 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 73.195 _refine.aniso_B[1][1] -0.03 _refine.aniso_B[2][2] -0.03 _refine.aniso_B[3][3] 0.06 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4FNJ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.617 _refine.pdbx_overall_ESU_R_Free 0.302 _refine.overall_SU_ML 0.239 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 13.839 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 870 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 923 _refine_hist.d_res_high 2.98 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.012 ? 1028 'X-RAY DIFFRACTION' ? r_bond_other_d 0.005 0.020 ? 420 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.185 1.375 ? 1600 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.818 3.025 ? 1020 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.242 0.200 ? 175 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.013 0.020 ? 511 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 222 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 6.218 7.739 ? 1025 'X-RAY DIFFRACTION' ? r_scbond_other 6.216 7.739 ? 1026 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 8.969 11.600 ? 1599 'X-RAY DIFFRACTION' ? r_long_range_B_refined 10.783 75.740 ? 1443 'X-RAY DIFFRACTION' ? r_long_range_B_other 10.779 75.724 ? 1444 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.983 _refine_ls_shell.d_res_low 3.060 _refine_ls_shell.number_reflns_R_work 323 _refine_ls_shell.R_factor_R_work 0.330 _refine_ls_shell.percent_reflns_obs 92.93 _refine_ls_shell.R_factor_R_free 0.384 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 6AZ4 _struct.title ;RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6AZ4 _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 1 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 1 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 1 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 2 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 2 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 3 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 3 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 3 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 4 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 4 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 4 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 5 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 5 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 6 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 6 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 6 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 7 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 7 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 7 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 8 B A 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 8 B A 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 9 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 9 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 9 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 12 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 12 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 12 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 13 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 13 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 13 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 14 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog32 hydrog ? ? A U 14 O2 ? ? ? 1_555 A A 29 N6 ? ? A U 14 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog33 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 28 O2 ? ? A G 17 A U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A G 17 O6 ? ? ? 1_555 A U 28 N3 ? ? A G 17 A U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 18 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 18 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 18 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 19 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 19 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 25 O6 ? ? A U 20 A G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 25 N1 ? ? A U 20 A G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? A G 21 N2 ? ? ? 1_555 A A 24 N7 ? ? A G 21 A A 24 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GP3 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'binding site for residue GP3 A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 9 ? G A 9 . ? 1_555 ? 2 AC1 7 C A 10 ? C A 10 . ? 1_555 ? 3 AC1 7 C A 11 ? C A 11 . ? 1_555 ? 4 AC1 7 G A 12 ? G A 12 . ? 1_555 ? 5 AC1 7 U A 26 ? U A 26 . ? 3_555 ? 6 AC1 7 C A 32 ? C A 32 . ? 1_555 ? 7 AC1 7 C B 1 ? C B 1 . ? 1_555 ? # _atom_sites.entry_id 6AZ4 _atom_sites.fract_transf_matrix[1][1] 0.012596 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013577 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 A 29 29 29 A A A . n A 1 30 U 30 30 30 U U A . n A 1 31 G 31 31 31 G G A . n A 1 32 C 32 32 32 C C A . n B 2 1 C 1 1 1 C C B . n B 2 2 A 2 2 2 A A B . n B 2 3 G 3 3 3 G G B . n B 2 4 C 4 4 4 C C B . n B 2 5 A 5 5 5 A A B . n B 2 6 G 6 6 6 G G B . n B 2 7 C 7 7 7 C C B . n B 2 8 A 8 8 8 A A B . n B 2 9 G 9 9 9 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GP3 1 101 1 GP3 GP3 A . D 4 HOH 1 201 1 HOH HOH A . E 4 HOH 1 101 2 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1540 ? 1 MORE 1 ? 1 'SSA (A^2)' 7510 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-21 2 'Structure model' 1 1 2018-03-14 3 'Structure model' 1 2 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_refine_hist.d_res_low' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v1.0 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v1.0 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A A 24 ? ? P A G 25 ? ? 1.525 1.607 -0.082 0.012 Y 2 1 "O3'" A G 25 ? ? P A U 26 ? ? 1.694 1.607 0.087 0.012 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 21 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 21 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 21 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.65 _pdbx_validate_rmsd_angle.angle_target_value 113.70 _pdbx_validate_rmsd_angle.angle_deviation 15.95 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GP3 N9A N Y N 111 GP3 C8A C Y N 112 GP3 N7A N Y N 113 GP3 C5A C Y N 114 GP3 C6A C N N 115 GP3 O6A O N N 116 GP3 N1A N N N 117 GP3 C2A C N N 118 GP3 N2A N N N 119 GP3 N3A N N N 120 GP3 C4A C Y N 121 GP3 O5D O N N 122 GP3 C5D C N N 123 GP3 C4D C N R 124 GP3 O4D O N N 125 GP3 C3D C N S 126 GP3 O3D O N N 127 GP3 C2D C N R 128 GP3 O2D O N N 129 GP3 C1D C N R 130 GP3 PA P N R 131 GP3 O1A O N N 132 GP3 O2A O N N 133 GP3 O3A O N N 134 GP3 PB P N N 135 GP3 O1B O N N 136 GP3 O2B O N N 137 GP3 O3B O N N 138 GP3 PG P N R 139 GP3 O1G O N N 140 GP3 O2G O N N 141 GP3 O5E O N N 142 GP3 C5E C N N 143 GP3 C4E C N R 144 GP3 O4E O N N 145 GP3 C3E C N S 146 GP3 O3E O N N 147 GP3 C2E C N R 148 GP3 O2E O N N 149 GP3 C1E C N R 150 GP3 N9B N Y N 151 GP3 C8B C Y N 152 GP3 N7B N Y N 153 GP3 C5B C Y N 154 GP3 C6B C N N 155 GP3 O6B O N N 156 GP3 N1B N N N 157 GP3 C2B C N N 158 GP3 N2B N N N 159 GP3 N3B N N N 160 GP3 C4B C Y N 161 GP3 H8A H N N 162 GP3 H1A H N N 163 GP3 H21A H N N 164 GP3 H22A H N N 165 GP3 H51A H N N 166 GP3 H52A H N N 167 GP3 H4D H N N 168 GP3 H3D H N N 169 GP3 HO3A H N N 170 GP3 H2D H N N 171 GP3 HO2A H N N 172 GP3 H1D H N N 173 GP3 HOA2 H N N 174 GP3 HOB2 H N N 175 GP3 HOG2 H N N 176 GP3 H51B H N N 177 GP3 H52B H N N 178 GP3 H4E H N N 179 GP3 H3E H N N 180 GP3 HO3B H N N 181 GP3 H2E H N N 182 GP3 HO2B H N N 183 GP3 H1E H N N 184 GP3 H8B H N N 185 GP3 H1B H N N 186 GP3 H21B H N N 187 GP3 H22B H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 U OP3 O N N 192 U P P N N 193 U OP1 O N N 194 U OP2 O N N 195 U "O5'" O N N 196 U "C5'" C N N 197 U "C4'" C N R 198 U "O4'" O N N 199 U "C3'" C N S 200 U "O3'" O N N 201 U "C2'" C N R 202 U "O2'" O N N 203 U "C1'" C N R 204 U N1 N N N 205 U C2 C N N 206 U O2 O N N 207 U N3 N N N 208 U C4 C N N 209 U O4 O N N 210 U C5 C N N 211 U C6 C N N 212 U HOP3 H N N 213 U HOP2 H N N 214 U "H5'" H N N 215 U "H5''" H N N 216 U "H4'" H N N 217 U "H3'" H N N 218 U "HO3'" H N N 219 U "H2'" H N N 220 U "HO2'" H N N 221 U "H1'" H N N 222 U H3 H N N 223 U H5 H N N 224 U H6 H N N 225 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GP3 N9A C8A sing Y N 116 GP3 N9A C4A sing Y N 117 GP3 N9A C1D sing N N 118 GP3 C8A N7A doub Y N 119 GP3 C8A H8A sing N N 120 GP3 N7A C5A sing Y N 121 GP3 C5A C6A sing N N 122 GP3 C5A C4A doub Y N 123 GP3 C6A O6A doub N N 124 GP3 C6A N1A sing N N 125 GP3 N1A C2A sing N N 126 GP3 N1A H1A sing N N 127 GP3 C2A N2A sing N N 128 GP3 C2A N3A doub N N 129 GP3 N2A H21A sing N N 130 GP3 N2A H22A sing N N 131 GP3 N3A C4A sing N N 132 GP3 O5D C5D sing N N 133 GP3 O5D PA sing N N 134 GP3 C5D C4D sing N N 135 GP3 C5D H51A sing N N 136 GP3 C5D H52A sing N N 137 GP3 C4D O4D sing N N 138 GP3 C4D C3D sing N N 139 GP3 C4D H4D sing N N 140 GP3 O4D C1D sing N N 141 GP3 C3D O3D sing N N 142 GP3 C3D C2D sing N N 143 GP3 C3D H3D sing N N 144 GP3 O3D HO3A sing N N 145 GP3 C2D O2D sing N N 146 GP3 C2D C1D sing N N 147 GP3 C2D H2D sing N N 148 GP3 O2D HO2A sing N N 149 GP3 C1D H1D sing N N 150 GP3 PA O1A doub N N 151 GP3 PA O2A sing N N 152 GP3 PA O3A sing N N 153 GP3 O2A HOA2 sing N N 154 GP3 O3A PB sing N N 155 GP3 PB O1B doub N N 156 GP3 PB O2B sing N N 157 GP3 PB O3B sing N N 158 GP3 O2B HOB2 sing N N 159 GP3 O3B PG sing N N 160 GP3 PG O1G doub N N 161 GP3 PG O2G sing N N 162 GP3 PG O5E sing N N 163 GP3 O2G HOG2 sing N N 164 GP3 O5E C5E sing N N 165 GP3 C5E C4E sing N N 166 GP3 C5E H51B sing N N 167 GP3 C5E H52B sing N N 168 GP3 C4E O4E sing N N 169 GP3 C4E C3E sing N N 170 GP3 C4E H4E sing N N 171 GP3 O4E C1E sing N N 172 GP3 C3E O3E sing N N 173 GP3 C3E C2E sing N N 174 GP3 C3E H3E sing N N 175 GP3 O3E HO3B sing N N 176 GP3 C2E O2E sing N N 177 GP3 C2E C1E sing N N 178 GP3 C2E H2E sing N N 179 GP3 O2E HO2B sing N N 180 GP3 C1E N9B sing N N 181 GP3 C1E H1E sing N N 182 GP3 N9B C8B sing Y N 183 GP3 N9B C4B sing Y N 184 GP3 C8B N7B doub Y N 185 GP3 C8B H8B sing N N 186 GP3 N7B C5B sing Y N 187 GP3 C5B C6B sing N N 188 GP3 C5B C4B doub Y N 189 GP3 C6B O6B doub N N 190 GP3 C6B N1B sing N N 191 GP3 N1B C2B sing N N 192 GP3 N1B H1B sing N N 193 GP3 C2B N2B sing N N 194 GP3 C2B N3B doub N N 195 GP3 N2B H21B sing N N 196 GP3 N2B H22B sing N N 197 GP3 N3B C4B sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 U OP3 P sing N N 201 U OP3 HOP3 sing N N 202 U P OP1 doub N N 203 U P OP2 sing N N 204 U P "O5'" sing N N 205 U OP2 HOP2 sing N N 206 U "O5'" "C5'" sing N N 207 U "C5'" "C4'" sing N N 208 U "C5'" "H5'" sing N N 209 U "C5'" "H5''" sing N N 210 U "C4'" "O4'" sing N N 211 U "C4'" "C3'" sing N N 212 U "C4'" "H4'" sing N N 213 U "O4'" "C1'" sing N N 214 U "C3'" "O3'" sing N N 215 U "C3'" "C2'" sing N N 216 U "C3'" "H3'" sing N N 217 U "O3'" "HO3'" sing N N 218 U "C2'" "O2'" sing N N 219 U "C2'" "C1'" sing N N 220 U "C2'" "H2'" sing N N 221 U "O2'" "HO2'" sing N N 222 U "C1'" N1 sing N N 223 U "C1'" "H1'" sing N N 224 U N1 C2 sing N N 225 U N1 C6 sing N N 226 U C2 O2 doub N N 227 U C2 N3 sing N N 228 U N3 C4 sing N N 229 U N3 H3 sing N N 230 U C4 O4 doub N N 231 U C4 C5 sing N N 232 U C5 C6 doub N N 233 U C5 H5 sing N N 234 U C6 H6 sing N N 235 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6AZ4 'double helix' 6AZ4 'a-form double helix' 6AZ4 tetraloop 6AZ4 'mismatched base pair' 6AZ4 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 9 1_555 -0.174 -0.145 0.567 4.481 -15.609 -2.390 1 A_C1:G9_B A 1 ? B 9 ? 19 1 1 A U 2 1_555 B A 8 1_555 -0.575 -0.206 0.152 4.635 -12.007 -2.924 2 A_U2:A8_B A 2 ? B 8 ? 20 1 1 A G 3 1_555 B C 7 1_555 -0.159 -0.209 0.034 2.518 -10.313 -2.509 3 A_G3:C7_B A 3 ? B 7 ? 19 1 1 A C 4 1_555 B G 6 1_555 0.034 -0.253 -0.082 4.193 -12.917 -3.257 4 A_C4:G6_B A 4 ? B 6 ? 19 1 1 A U 5 1_555 B A 5 1_555 0.349 -0.048 0.446 3.145 -9.413 4.285 5 A_U5:A5_B A 5 ? B 5 ? 20 1 1 A G 6 1_555 B C 4 1_555 -0.008 0.193 0.381 6.232 -4.859 5.203 6 A_G6:C4_B A 6 ? B 4 ? 19 1 1 A C 7 1_555 B G 3 1_555 -0.150 -0.202 0.520 0.927 -11.933 -2.224 7 A_C7:G3_B A 7 ? B 3 ? 19 1 1 A U 8 1_555 B A 2 1_555 -0.136 -0.002 0.634 -6.091 -18.226 2.868 8 A_U8:A2_B A 8 ? B 2 ? 20 1 1 A G 9 1_555 B C 1 1_555 -0.124 0.018 0.155 1.990 -11.658 4.212 9 A_G9:C1_B A 9 ? B 1 ? 19 1 1 A G 12 1_555 A C 32 1_555 -0.212 -0.211 -0.162 -2.798 -11.692 -0.392 10 A_G12:C32_A A 12 ? A 32 ? 19 1 1 A C 13 1_555 A G 31 1_555 0.053 -0.076 -0.195 1.619 -11.072 2.680 11 A_C13:G31_A A 13 ? A 31 ? 19 1 1 A U 14 1_555 A A 29 1_555 4.125 -2.657 -0.647 -22.019 1.090 -81.832 12 A_U14:A29_A A 14 ? A 29 ? 24 4 1 A G 17 1_555 A U 28 1_555 -1.916 -0.491 0.119 -1.360 -6.770 -0.985 13 A_G17:U28_A A 17 ? A 28 ? 28 1 1 A G 18 1_555 A C 27 1_555 -0.474 -0.403 -0.172 -3.566 -7.790 -2.043 14 A_G18:C27_A A 18 ? A 27 ? 19 1 1 A A 19 1_555 A U 26 1_555 0.022 -0.173 -0.303 -13.151 -11.418 -1.333 15 A_A19:U26_A A 19 ? A 26 ? 20 1 1 A U 20 1_555 A G 25 1_555 2.504 -0.953 -0.559 -6.381 9.279 -2.911 16 A_U20:G25_A A 20 ? A 25 ? 28 1 1 A G 21 1_555 A A 24 1_555 7.203 -5.704 1.210 12.264 0.859 -12.533 17 A_G21:A24_A A 21 ? A 24 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 9 1_555 A U 2 1_555 B A 8 1_555 -0.481 -1.988 3.175 -4.279 6.420 30.217 -4.827 0.145 2.746 12.070 8.044 31.165 1 AA_C1U2:A8G9_BB A 1 ? B 9 ? A 2 ? B 8 ? 1 A U 2 1_555 B A 8 1_555 A G 3 1_555 B C 7 1_555 -0.263 -1.485 3.184 -2.175 7.455 33.547 -3.589 0.129 2.810 12.705 3.707 34.409 2 AA_U2G3:C7A8_BB A 2 ? B 8 ? A 3 ? B 7 ? 1 A G 3 1_555 B C 7 1_555 A C 4 1_555 B G 6 1_555 -0.392 -1.254 3.178 0.426 4.617 34.404 -2.772 0.719 2.984 7.763 -0.717 34.706 3 AA_G3C4:G6C7_BB A 3 ? B 7 ? A 4 ? B 6 ? 1 A C 4 1_555 B G 6 1_555 A U 5 1_555 B A 5 1_555 0.985 -1.727 3.239 -0.151 3.976 31.556 -3.848 -1.824 3.000 7.274 0.277 31.799 4 AA_C4U5:A5G6_BB A 4 ? B 6 ? A 5 ? B 5 ? 1 A U 5 1_555 B A 5 1_555 A G 6 1_555 B C 4 1_555 0.375 -1.731 2.784 2.675 10.135 32.861 -4.153 -0.309 2.193 17.373 -4.585 34.448 5 AA_U5G6:C4A5_BB A 5 ? B 5 ? A 6 ? B 4 ? 1 A G 6 1_555 B C 4 1_555 A C 7 1_555 B G 3 1_555 -0.499 -1.639 3.322 -0.506 6.972 32.418 -4.006 0.792 2.923 12.309 0.893 33.143 6 AA_G6C7:G3C4_BB A 6 ? B 4 ? A 7 ? B 3 ? 1 A C 7 1_555 B G 3 1_555 A U 8 1_555 B A 2 1_555 0.479 -1.818 3.112 0.327 12.071 34.174 -4.392 -0.732 2.360 19.791 -0.535 36.185 7 AA_C7U8:A2G3_BB A 7 ? B 3 ? A 8 ? B 2 ? 1 A U 8 1_555 B A 2 1_555 A G 9 1_555 B C 1 1_555 -0.440 -1.761 2.837 -1.573 5.590 29.619 -4.318 0.581 2.490 10.804 3.040 30.170 8 AA_U8G9:C1A2_BB A 8 ? B 2 ? A 9 ? B 1 ? 1 A G 12 1_555 A C 32 1_555 A C 13 1_555 A G 31 1_555 -0.744 -2.087 3.122 -0.837 1.971 28.918 -4.574 1.313 2.996 3.941 1.674 28.996 9 AA_G12C13:G31C32_AA A 12 ? A 32 ? A 13 ? A 31 ? 1 A C 13 1_555 A G 31 1_555 A U 14 1_555 A A 29 1_555 -2.253 -1.650 3.971 12.384 9.079 73.286 -1.681 2.295 3.415 7.526 -10.265 74.656 10 AA_C13U14:A29G31_AA A 13 ? A 31 ? A 14 ? A 29 ? 1 A U 14 1_555 A A 29 1_555 A G 17 1_555 A U 28 1_555 -0.805 -0.313 6.468 3.594 1.602 51.407 -0.574 1.407 6.390 1.844 -4.136 51.547 11 AA_U14G17:U28A29_AA A 14 ? A 29 ? A 17 ? A 28 ? 1 A G 17 1_555 A U 28 1_555 A G 18 1_555 A C 27 1_555 0.058 -1.883 3.288 0.154 5.290 33.506 -4.046 -0.076 2.965 9.105 -0.265 33.909 12 AA_G17G18:C27U28_AA A 17 ? A 28 ? A 18 ? A 27 ? 1 A G 18 1_555 A C 27 1_555 A A 19 1_555 A U 26 1_555 0.359 -2.047 3.463 1.282 9.260 34.976 -4.580 -0.400 2.858 15.076 -2.088 36.165 13 AA_G18A19:U26C27_AA A 18 ? A 27 ? A 19 ? A 26 ? 1 A A 19 1_555 A U 26 1_555 A U 20 1_555 A G 25 1_555 0.408 -1.237 3.335 3.597 3.154 43.582 -1.961 -0.200 3.264 4.233 -4.828 43.831 14 AA_A19U20:G25U26_AA A 19 ? A 26 ? A 20 ? A 25 ? 1 A U 20 1_555 A G 25 1_555 A G 21 1_555 A A 24 1_555 -2.076 -0.892 2.634 1.448 17.177 44.440 -2.149 2.665 2.106 21.765 -1.835 47.508 15 AA_U20G21:A24G25_AA A 20 ? A 25 ? A 21 ? A 24 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "DIGUANOSINE-5'-TRIPHOSPHATE" GP3 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FNJ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #