HEADER IMMUNE SYSTEM 11-SEP-17 6AZK TITLE STRUCTURE OF CETUXIMAB WITH AMINOHEPTANOIC ACID-LINKED N-(3- TITLE 2 HYDROXYPROPYL)-L-ARGININE MEDITOPE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CETUXIMAB FAB LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHIMERIC MURINE/HUMAN ANTIBODY PURIFIED FROM ERBITUX; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CETUXIMAB FAB HEAVY CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: CHIMERIC MURINE/HUMAN ANTIBODY PURIFIED FROM ERBITUX; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: MEDITOPE; COMPND 13 CHAIN: E, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 10090, 9606; SOURCE 4 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 10090, 9606; SOURCE 9 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS ANTIBODY, ANTI-EGFR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.P.BZYMEK,J.C.WILLIAMS REVDAT 3 15-NOV-23 6AZK 1 LINK ATOM REVDAT 2 04-OCT-23 6AZK 1 LINK REVDAT 1 13-DEC-17 6AZK 0 JRNL AUTH K.P.BZYMEK,Y.MA,K.N.AVERY,D.A.HORNE,J.C.WILLIAMS JRNL TITL MEDITOPE-FAB INTERACTION: THREADING THE HOLE. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 688 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29199990 JRNL DOI 10.1107/S2053230X17016272 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 40779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1164 - 6.0977 0.99 2797 148 0.2139 0.2214 REMARK 3 2 6.0977 - 4.8448 1.00 2673 140 0.1643 0.2008 REMARK 3 3 4.8448 - 4.2338 1.00 2630 139 0.1257 0.1583 REMARK 3 4 4.2338 - 3.8473 1.00 2632 138 0.1410 0.1850 REMARK 3 5 3.8473 - 3.5719 1.00 2600 137 0.1607 0.1811 REMARK 3 6 3.5719 - 3.3615 1.00 2603 137 0.1618 0.1867 REMARK 3 7 3.3615 - 3.1933 1.00 2575 136 0.1722 0.2397 REMARK 3 8 3.1933 - 3.0544 1.00 2592 136 0.1878 0.2522 REMARK 3 9 3.0544 - 2.9369 1.00 2573 136 0.1864 0.2368 REMARK 3 10 2.9369 - 2.8356 1.00 2560 134 0.1872 0.2660 REMARK 3 11 2.8356 - 2.7470 0.99 2587 137 0.1864 0.2355 REMARK 3 12 2.7470 - 2.6685 0.99 2544 133 0.1804 0.2292 REMARK 3 13 2.6685 - 2.5983 0.99 2562 135 0.1744 0.2441 REMARK 3 14 2.5983 - 2.5349 0.99 2570 135 0.1865 0.2726 REMARK 3 15 2.5349 - 2.4773 0.89 2242 118 0.2097 0.2560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6978 REMARK 3 ANGLE : 1.077 9511 REMARK 3 CHIRALITY : 0.070 1071 REMARK 3 PLANARITY : 0.004 1216 REMARK 3 DIHEDRAL : 11.095 4174 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.477 REMARK 200 RESOLUTION RANGE LOW (A) : 33.113 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.20700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE PH 5, 1.8 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.18000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.18000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 213 REMARK 465 LYS B 220 REMARK 465 SER B 221 REMARK 465 ALA C 213 REMARK 465 SER D 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 ARG C 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 GLN D 1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 C 301 O HOH C 401 1.85 REMARK 500 NZ LYS B 123 O HOH B 401 1.88 REMARK 500 O HOH A 384 O HOH A 420 1.91 REMARK 500 O HOH D 389 O HOH D 405 1.92 REMARK 500 O HOH C 403 O HOH C 470 1.94 REMARK 500 O ALA A 144 O HOH A 301 1.95 REMARK 500 O HOH B 485 O HOH B 502 1.98 REMARK 500 O HOH C 524 O HOH C 538 2.05 REMARK 500 O4 SO4 C 301 O HOH C 402 2.07 REMARK 500 O3 SO4 B 301 O HOH B 402 2.07 REMARK 500 O HOH A 423 O HOH A 435 2.07 REMARK 500 O HOH C 458 O HOH C 504 2.08 REMARK 500 NZ LYS D 75 O HOH D 301 2.08 REMARK 500 ND2 ASN B 83 O HOH B 403 2.09 REMARK 500 O THR D 90 O HOH D 302 2.10 REMARK 500 OD2 ASP D 72 O HOH D 301 2.10 REMARK 500 NZ LYS A 126 O HOH A 302 2.11 REMARK 500 O HOH C 448 O HOH C 533 2.12 REMARK 500 O HOH A 315 O HOH A 425 2.12 REMARK 500 NZ LYS B 5 O HOH B 404 2.12 REMARK 500 O HOH C 422 O HOH C 518 2.12 REMARK 500 O HOH B 445 O HOH B 500 2.12 REMARK 500 O SER A 131 O HOH A 303 2.12 REMARK 500 O HOH D 401 O HOH D 407 2.12 REMARK 500 O HOH C 478 O HOH C 524 2.14 REMARK 500 OD1 ASP A 185 O HOH A 304 2.15 REMARK 500 OD1 ASP D 103 O HOH D 303 2.17 REMARK 500 O HOH C 419 O HOH C 521 2.18 REMARK 500 O HOH B 509 O HOH B 510 2.18 REMARK 500 O LYS A 188 O HOH A 305 2.18 REMARK 500 O ALA C 112 O HOH C 403 2.19 REMARK 500 OE1 GLN A 124 O HOH A 306 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 331 O HOH A 351 3444 1.83 REMARK 500 O HOH A 307 O HOH D 373 3554 1.92 REMARK 500 O HOH B 513 O HOH C 453 3454 2.06 REMARK 500 O HOH B 486 O HOH C 532 4455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -46.52 68.98 REMARK 500 SER A 52 -8.61 -140.12 REMARK 500 ALA A 84 -177.12 -173.66 REMARK 500 ASN A 91 32.07 -143.54 REMARK 500 ASN A 138 70.86 47.50 REMARK 500 ARG A 211 108.74 -58.22 REMARK 500 SER B 15 -11.86 73.14 REMARK 500 ALA B 120 -168.21 -71.21 REMARK 500 ILE C 29 20.75 -140.34 REMARK 500 ALA C 51 -46.83 71.55 REMARK 500 ALA C 84 -178.32 -179.37 REMARK 500 LYS C 190 -53.37 -120.21 REMARK 500 SER D 15 -15.27 73.07 REMARK 500 ALA D 119 38.77 -89.71 REMARK 500 SER D 133 -165.33 -163.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IDO RELATED DB: PDB REMARK 900 RELATED ID: 6AYN RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF CETUXIMAB FAB LIGHT CHAIN IN THIS ENTRY MATCHES TO THE REMARK 999 SEQUENCE OF CETUXIMAB FAB LIGHT CHAIN FROM THE FIRST DEPOSITED REMARK 999 CETUXIMAB STRUCTURE IN PDB (1YY8) DBREF 6AZK A 1 107 PDB 6AZK 6AZK 1 107 DBREF 6AZK A 108 213 UNP P01834 IGKC_HUMAN 1 106 DBREF 6AZK B 1 107 PDB 6AZK 6AZK 1 107 DBREF 6AZK B 108 221 UNP S6B291 S6B291_HUMAN 125 238 DBREF 6AZK C 1 107 PDB 6AZK 6AZK 1 107 DBREF 6AZK C 108 213 UNP P01834 IGKC_HUMAN 1 106 DBREF 6AZK D 1 107 PDB 6AZK 6AZK 1 107 DBREF 6AZK D 108 221 UNP S6B291 S6B291_HUMAN 125 238 DBREF 6AZK E 2 1 PDB 6AZK 6AZK 2 1 DBREF 6AZK F 2 1 PDB 6AZK 6AZK 2 1 SEQADV 6AZK ALA A 213 UNP P01834 GLU 106 CONFLICT SEQADV 6AZK ALA B 119 UNP S6B291 SER 136 CONFLICT SEQADV 6AZK ALA C 213 UNP P01834 GLU 106 CONFLICT SEQADV 6AZK ALA D 119 UNP S6B291 SER 136 CONFLICT SEQRES 1 A 213 ASP ILE LEU LEU THR GLN SER PRO VAL ILE LEU SER VAL SEQRES 2 A 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 A 213 GLN SER ILE GLY THR ASN ILE HIS TRP TYR GLN GLN ARG SEQRES 4 A 213 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 A 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN ASN SEQRES 8 A 213 ASN ASN TRP PRO THR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 213 PHE ASN ARG GLY ALA SEQRES 1 B 221 GLN VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 B 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 B 221 PHE SER LEU THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 B 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 B 221 SER GLY GLY ASN THR ASP TYR ASN THR PRO PHE THR SER SEQRES 6 B 221 ARG LEU SER ILE ASN LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 B 221 PHE PHE LYS MET ASN SER LEU GLN SER ASN ASP THR ALA SEQRES 8 B 221 ILE TYR TYR CYS ALA ARG ALA LEU THR TYR TYR ASP TYR SEQRES 9 B 221 GLU PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 221 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 B 221 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 B 221 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 B 221 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 B 221 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 B 221 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 B 221 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 B 221 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 1 C 213 ASP ILE LEU LEU THR GLN SER PRO VAL ILE LEU SER VAL SEQRES 2 C 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 C 213 GLN SER ILE GLY THR ASN ILE HIS TRP TYR GLN GLN ARG SEQRES 4 C 213 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 C 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 C 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 C 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN ASN SEQRES 8 C 213 ASN ASN TRP PRO THR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 C 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 C 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 C 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 C 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 C 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 C 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 C 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 C 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 C 213 PHE ASN ARG GLY ALA SEQRES 1 D 221 GLN VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 D 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 D 221 PHE SER LEU THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 D 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 D 221 SER GLY GLY ASN THR ASP TYR ASN THR PRO PHE THR SER SEQRES 6 D 221 ARG LEU SER ILE ASN LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 D 221 PHE PHE LYS MET ASN SER LEU GLN SER ASN ASP THR ALA SEQRES 8 D 221 ILE TYR TYR CYS ALA ARG ALA LEU THR TYR TYR ASP TYR SEQRES 9 D 221 GLU PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 D 221 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 D 221 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 D 221 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 D 221 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 D 221 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 D 221 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 D 221 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 D 221 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 1 E 11 GLN PHE ASP LEU SER THR C6D ARG LEU LYS 011 SEQRES 1 F 11 GLN PHE ASP LEU SER THR C6D ARG LEU LYS 011 HET C6D E 8 15 HET 011 E 1 9 HET C6D F 8 15 HET 011 F 1 9 HET SO4 B 301 5 HET SO4 C 301 5 HETNAM C6D N~5~-[N-(3-HYDROXYPROPYL)CARBAMIMIDOYL]-L-ORNITHINE HETNAM 011 7-AMINOHEPTANOIC ACID HETNAM SO4 SULFATE ION FORMUL 5 C6D 2(C9 H20 N4 O3) FORMUL 5 011 2(C7 H15 N O2) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *526(H2 O) HELIX 1 AA1 GLU A 79 ILE A 83 5 5 HELIX 2 AA2 SER A 121 SER A 127 1 7 HELIX 3 AA3 LYS A 183 LYS A 188 1 6 HELIX 4 AA4 THR B 61 THR B 64 5 4 HELIX 5 AA5 GLN B 86 THR B 90 5 5 HELIX 6 AA6 SER B 133 LYS B 135 5 3 HELIX 7 AA7 SER B 162 ALA B 164 5 3 HELIX 8 AA8 SER B 193 LEU B 195 5 3 HELIX 9 AA9 LYS B 207 ASN B 210 5 4 HELIX 10 AB1 GLU C 79 ILE C 83 5 5 HELIX 11 AB2 SER C 121 LYS C 126 1 6 HELIX 12 AB3 LYS C 183 LYS C 188 1 6 HELIX 13 AB4 THR D 61 THR D 64 5 4 HELIX 14 AB5 GLN D 86 THR D 90 5 5 HELIX 15 AB6 SER D 133 LYS D 135 5 3 HELIX 16 AB7 SER D 162 ALA D 164 5 3 HELIX 17 AB8 SER D 193 LEU D 195 5 3 HELIX 18 AB9 LYS D 207 ASN D 210 5 4 SHEET 1 AA1 4 LEU A 4 GLN A 6 0 SHEET 2 AA1 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O LEU A 73 N PHE A 21 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N SER A 63 O SER A 74 SHEET 1 AA2 5 ILE A 10 VAL A 13 0 SHEET 2 AA2 5 THR A 102 LEU A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA2 5 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA2 5 ILE A 33 GLN A 38 -1 N GLN A 38 O ASP A 85 SHEET 5 AA2 5 ARG A 45 ILE A 48 -1 O LEU A 47 N TRP A 35 SHEET 1 AA3 4 ILE A 10 VAL A 13 0 SHEET 2 AA3 4 THR A 102 LEU A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O ASN A 137 N SER A 114 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O LEU A 175 N LEU A 136 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 GLN B 6 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O THR B 23 N LYS B 5 SHEET 3 AA6 4 GLN B 77 MET B 82 -1 O PHE B 80 N ILE B 20 SHEET 4 AA6 4 LEU B 67 ASP B 72 -1 N ASN B 70 O PHE B 79 SHEET 1 AA7 6 GLY B 10 VAL B 12 0 SHEET 2 AA7 6 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA7 6 ALA B 91 ALA B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA7 6 VAL B 34 SER B 40 -1 N VAL B 37 O TYR B 94 SHEET 5 AA7 6 GLY B 44 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O ASP B 58 N VAL B 50 SHEET 1 AA8 4 GLY B 10 VAL B 12 0 SHEET 2 AA8 4 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA8 4 ALA B 91 ALA B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA8 4 PHE B 106 TRP B 109 -1 O TYR B 108 N ARG B 97 SHEET 1 AA9 4 SER B 126 LEU B 130 0 SHEET 2 AA9 4 THR B 141 TYR B 151 -1 O GLY B 145 N LEU B 130 SHEET 3 AA9 4 TYR B 182 PRO B 191 -1 O TYR B 182 N TYR B 151 SHEET 4 AA9 4 VAL B 169 THR B 171 -1 N HIS B 170 O VAL B 187 SHEET 1 AB1 4 THR B 137 SER B 138 0 SHEET 2 AB1 4 THR B 141 TYR B 151 -1 O THR B 141 N SER B 138 SHEET 3 AB1 4 TYR B 182 PRO B 191 -1 O TYR B 182 N TYR B 151 SHEET 4 AB1 4 VAL B 175 LEU B 176 -1 N VAL B 175 O SER B 183 SHEET 1 AB2 3 THR B 157 TRP B 160 0 SHEET 2 AB2 3 ILE B 201 HIS B 206 -1 O ASN B 205 N THR B 157 SHEET 3 AB2 3 THR B 211 ARG B 216 -1 O VAL B 213 N VAL B 204 SHEET 1 AB3 4 LEU C 4 SER C 7 0 SHEET 2 AB3 4 VAL C 19 ALA C 25 -1 O ARG C 24 N THR C 5 SHEET 3 AB3 4 ASP C 70 ILE C 75 -1 O LEU C 73 N PHE C 21 SHEET 4 AB3 4 PHE C 62 SER C 67 -1 N SER C 63 O SER C 74 SHEET 1 AB4 6 ILE C 10 VAL C 13 0 SHEET 2 AB4 6 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AB4 6 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 104 SHEET 4 AB4 6 ILE C 33 GLN C 38 -1 N GLN C 38 O ASP C 85 SHEET 5 AB4 6 ARG C 45 LYS C 49 -1 O ARG C 45 N GLN C 37 SHEET 6 AB4 6 GLU C 53 SER C 54 -1 O GLU C 53 N LYS C 49 SHEET 1 AB5 4 ILE C 10 VAL C 13 0 SHEET 2 AB5 4 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AB5 4 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 104 SHEET 4 AB5 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 AB6 4 SER C 114 PHE C 118 0 SHEET 2 AB6 4 THR C 129 PHE C 139 -1 O LEU C 135 N PHE C 116 SHEET 3 AB6 4 TYR C 173 SER C 182 -1 O LEU C 175 N LEU C 136 SHEET 4 AB6 4 SER C 159 VAL C 163 -1 N GLN C 160 O THR C 178 SHEET 1 AB7 4 ALA C 153 LEU C 154 0 SHEET 2 AB7 4 LYS C 145 VAL C 150 -1 N VAL C 150 O ALA C 153 SHEET 3 AB7 4 VAL C 191 THR C 197 -1 O ALA C 193 N LYS C 149 SHEET 4 AB7 4 VAL C 205 ASN C 210 -1 O VAL C 205 N VAL C 196 SHEET 1 AB8 4 GLN D 3 GLN D 6 0 SHEET 2 AB8 4 LEU D 18 SER D 25 -1 O THR D 23 N LYS D 5 SHEET 3 AB8 4 GLN D 77 MET D 82 -1 O VAL D 78 N CYS D 22 SHEET 4 AB8 4 LEU D 67 ASP D 72 -1 N ASN D 70 O PHE D 79 SHEET 1 AB9 6 GLY D 10 VAL D 12 0 SHEET 2 AB9 6 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AB9 6 ALA D 91 ARG D 97 -1 N ALA D 91 O VAL D 115 SHEET 4 AB9 6 VAL D 34 SER D 40 -1 N VAL D 37 O TYR D 94 SHEET 5 AB9 6 GLY D 44 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AB9 6 THR D 57 TYR D 59 -1 O ASP D 58 N VAL D 50 SHEET 1 AC1 4 GLY D 10 VAL D 12 0 SHEET 2 AC1 4 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AC1 4 ALA D 91 ARG D 97 -1 N ALA D 91 O VAL D 115 SHEET 4 AC1 4 TYR D 108 TRP D 109 -1 O TYR D 108 N ARG D 97 SHEET 1 AC2 4 SER D 126 LEU D 130 0 SHEET 2 AC2 4 THR D 141 TYR D 151 -1 O GLY D 145 N LEU D 130 SHEET 3 AC2 4 TYR D 182 PRO D 191 -1 O TYR D 182 N TYR D 151 SHEET 4 AC2 4 VAL D 169 THR D 171 -1 N HIS D 170 O VAL D 187 SHEET 1 AC3 4 THR D 137 SER D 138 0 SHEET 2 AC3 4 THR D 141 TYR D 151 -1 O THR D 141 N SER D 138 SHEET 3 AC3 4 TYR D 182 PRO D 191 -1 O TYR D 182 N TYR D 151 SHEET 4 AC3 4 VAL D 175 LEU D 176 -1 N VAL D 175 O SER D 183 SHEET 1 AC4 3 THR D 157 TRP D 160 0 SHEET 2 AC4 3 ILE D 201 HIS D 206 -1 O ASN D 203 N SER D 159 SHEET 3 AC4 3 THR D 211 ARG D 216 -1 O THR D 211 N HIS D 206 SHEET 1 AC5 2 PHE E 3 ASP E 4 0 SHEET 2 AC5 2 ARG E 9 LEU E 10 -1 O ARG E 9 N ASP E 4 SHEET 1 AC6 2 PHE F 3 ASP F 4 0 SHEET 2 AC6 2 ARG F 9 LEU F 10 -1 O ARG F 9 N ASP F 4 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.06 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.09 SSBOND 4 CYS B 146 CYS B 202 1555 1555 2.02 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.06 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.04 SSBOND 7 CYS D 22 CYS D 95 1555 1555 2.08 SSBOND 8 CYS D 146 CYS D 202 1555 1555 2.03 LINK C 011 E 1 N GLN E 2 1555 1555 1.33 LINK N 011 E 1 C LYS E 11 1555 1555 1.33 LINK C THR E 7 N C6D E 8 1555 1555 1.33 LINK C C6D E 8 N ARG E 9 1555 1555 1.33 LINK C 011 F 1 N GLN F 2 1555 1555 1.33 LINK N 011 F 1 C LYS F 11 1555 1555 1.33 LINK C THR F 7 N C6D F 8 1555 1555 1.33 LINK C C6D F 8 N ARG F 9 1555 1555 1.33 CISPEP 1 SER A 7 PRO A 8 0 2.63 CISPEP 2 TRP A 94 PRO A 95 0 -0.51 CISPEP 3 TYR A 140 PRO A 141 0 3.07 CISPEP 4 PHE B 152 PRO B 153 0 -3.10 CISPEP 5 GLU B 154 PRO B 155 0 0.78 CISPEP 6 SER C 7 PRO C 8 0 -3.28 CISPEP 7 TRP C 94 PRO C 95 0 -2.46 CISPEP 8 TYR C 140 PRO C 141 0 1.87 CISPEP 9 PHE D 152 PRO D 153 0 -3.76 CISPEP 10 GLU D 154 PRO D 155 0 -2.95 SITE 1 AC1 3 LEU B 18 SER B 19 HOH B 402 SITE 1 AC2 8 SER C 156 GLY C 157 SER C 159 HOH C 401 SITE 2 AC2 8 HOH C 402 HOH C 406 HOH C 419 HOH C 493 CRYST1 64.360 82.930 212.050 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004716 0.00000